Lsi02G013860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Zinc finger, C3HC4 type family protein
Location	chr02: 18937278 .. 18939035 (+)
RNA-Seq Expression	Lsi02G013860
Synteny	Lsi02G013860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGTTGTTTGCATCCCCGCTAGCACCGAAGTTCTCTCTTTTCTTCAGCCCTATCGTGGCCGCCTCCCTCGATAATCTGTCCCCAATAAACCCTCTTTATTTCTCTCTCCGACGGAAAACAAGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGTAACCAACCGTCCATGCTCGGATGAATTCAGATTTGATTTGATTCCCTTGCCGTTCTTTGATACGATTTAATCTTACTTTCTTTTCCCTTTTGTTGGACATCTCGAATTTAATCGCAGGAGCGACTGCTTGGTGCTGCATTGGGGAGCGTGTTCGTCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCGGTCCATTTCCGAAAACTATCCATCAGCCACCCAATCTCCGGTAAGCGTAAATTCCCTTTCTGTAACCCTAATGATCATTCTTTCATTGTTTGTATTTAACTATTGTTTCGAGGCGATTAGGATGGTCCTGCACCGAAAGATATATGAAAATGTAGATCTTTGAATATTTGGATGTTTGGGTTTATTGGGAGAAGAGAATGAAATGAATGAAATCATCAAATTTTTCGATCATCCGTTCTTGTTAAATTAGTGCTATATATGTCCGAAAATAATATTAATCTATAATTTATATGATTTTTTGTGTTTACTATATATATATATATCAATATTAATTCATGCTAAATTTTTAATTTTTTCTATATAAAACTGAGAACTACATATTTTGAGTATTTTAAAATCAAATGTTAACCAAAATTAAATCTATTTTGGAGTATAACTTATCCTAGAAAAATATGGTTTTGTACAAAACTATGCTCTTTACTTCGTTAGTTAAGGATGCAATTGTAAAAGACCAAATGAGGACCATGGATATCAAGAAAACTCGTTATTTGCTGTCATTTTGGATGCCTTGACATGGAGCATTTTCATTATAGAAATTCGGTGTTTACTCCTTGGATATTTGTAATAACTGGTTCTCAACGATCTTTGAGAAAATGTTAATTTAAAGCAGAAGTGTCGCAGTACAATGAACTTGATATTCAATCTTTGTCCATAGGATTAGAATAAGATATGTGGTACCCCTGGATTTTTCCCATCTGGTAATGGTGAGTGATGTGGGAGAGTCAGGGTTTTTGTTATTTCGAAGGAATTATTGAATATATTTTATTGAAACTTTGTTCTTTTCCCGCAAGATGTCTTGCCAACAATGTAGAGTTCCTTAATACAAGTTCTATCATCTCTGAATTTATACTTCCATCTAGCAGCTAATACATTGATCTAATATCCTCTTTGAAACTACTTTAGATGAGTAAACCTGTACTAGCAAAGAAATATGGCCCAGAGTTTTCGCACCTATGGAATAGAGCTGTAGACCAGACATTTGGACCCGTGATTCAGGCTCTCAGTTCACGGGGATGGTGATAGATCGAGAGTGGTTTCTTCATCAATGTATTTAACATCAATTCATGAAACATGTAAGGAAACAGAATTTTAAATTTTCTAGTTTTAACATTCTGGATTATCAAAGAATTGATGTTATGACTGTGGATCAAAACTTCAAAGCCACGAGTATAAAGGTCTTTAAAACAATAAAATCTTTTCTTTTAGAAATCTGTACTTCCTTTTTTCCCATATATATTTCAGTGAGAAGTCATGTGTTTAAATTGTTAACATAGTATTGTGAGGGAGATTAGTAGTGGAATATTTAGTTAGTAGCTCCTTATATGAACACAAATGAGA

mRNA sequence

AAAAGTTGTTTGCATCCCCGCTAGCACCGAAGTTCTCTCTTTTCTTCAGCCCTATCGTGGCCGCCTCCCTCGATAATCTGTCCCCAATAAACCCTCTTTATTTCTCTCTCCGACGGAAAACAAGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTGGGGAGCGTGTTCGTCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCGGTCCATTTCCGAAAACTATCCATCAGCCACCCAATCTCCGATGAGTAAACCTGTACTAGCAAAGAAATATGGCCCAGAGTTTTCGCACCTATGGAATAGAGCTGTAGACCAGACATTTGGACCCGTGATTCAGGCTCTCAGTTCACGGGGATGGTGATAGATCGAGAGTGGTTTCTTCATCAATGTATTTAACATCAATTCATGAAACATGTAAGGAAACAGAATTTTAAATTTTCTAGTTTTAACATTCTGGATTATCAAAGAATTGATGTTATGACTGTGGATCAAAACTTCAAAGCCACGAGTATAAAGGTCTTTAAAACAATAAAATCTTTTCTTTTAGAAATCTGTACTTCCTTTTTTCCCATATATATTTCAGTGAGAAGTCATGTGTTTAAATTGTTAACATAGTATTGTGAGGGAGATTAGTAGTGGAATATTTAGTTAGTAGCTCCTTATATGAACACAAATGAGA

Coding sequence (CDS)

ATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTGGGGAGCGTGTTCGTCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCGGTCCATTTCCGAAAACTATCCATCAGCCACCCAATCTCCGATGAGTAAACCTGTACTAGCAAAGAAATATGGCCCAGAGTTTTCGCACCTATGGAATAGAGCTGTAGACCAGACATTTGGACCCGTGATTCAGGCTCTCAGTTCACGGGGATGGTGA

Protein sequence

MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

Homology

[Close]

BLAST of Lsi02G013860 vs. ExPASy TrEMBL
Match: A0A0A0LXB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495270 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.2e-36
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
           MIS+LAQERLLG ALGSVF GVVVFEQRKSLY+SISENYP ATQSPM KPVLAKKYGPEF
Sbjct: 54  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 113

Query: 61  SHLWNRAVDQTFGPVIQALSSRGW 85
           SHLWNRAVDQTFGPVIQALSSRGW
Sbjct: 114 SHLWNRAVDQTFGPVIQALSSRGW 137

[Close]

BLAST of Lsi02G013860 vs. ExPASy TrEMBL
Match: A0A5D3BR76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00590 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.3e-35
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
          MIS+LAQERLLG ALGS F GVVVFEQRKSLY+SISENYP ATQSPM KPVLAKKYGPEF
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lsi02G013860 vs. ExPASy TrEMBL
Match: A0A6J1DSC3 (uncharacterized protein LOC111023455 OS=Momordica charantia OX=3673 GN=LOC111023455 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.3e-35
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
          MISILAQERLLGAALGSVF GVVVFEQRKSLYRSISENYP A QSPM KPV+AKKYGPE 
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEV 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lsi02G013860 vs. ExPASy TrEMBL
Match: A0A1S3C5P6 (uncharacterized protein LOC103497197 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497197 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.3e-35
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
          MIS+LAQERLLG ALGS F GVVVFEQRKSLY+SISENYP ATQSPM KPVLAKKYGPEF
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lsi02G013860 vs. ExPASy TrEMBL
Match: A0A6J1HZ79 (uncharacterized protein LOC111469446 OS=Cucurbita maxima OX=3661 GN=LOC111469446 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
          MISILAQERLLGAALGSVF GVVVFEQRKSLY SIS+NYP  TQSPM KPVLAKKYGPEF
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYDSISKNYPPTTQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWN AVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNSAVDQTFGPVIQALSSRGW 84

[Close]

BLAST of Lsi02G013860 vs. NCBI nr
Match: XP_004152895.1 (uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
          MIS+LAQERLLG ALGSVF GVVVFEQRKSLY+SISENYP ATQSPM KPVLAKKYGPEF
Sbjct: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPVIQALSSRGW 84

[Close]

BLAST of Lsi02G013860 vs. NCBI nr
Match: KAG6607218.1 (hypothetical protein SDJN03_00560, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
          MISILAQERLLGAALGSVFVGVVVFEQRKS+YRSISENYP ATQSPM K VLAKKYGPE 
Sbjct: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPVIQALSSRGW 84

[Close]

BLAST of Lsi02G013860 vs. NCBI nr
Match: XP_022156577.1 (uncharacterized protein LOC111023455 [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
          MISILAQERLLGAALGSVF GVVVFEQRKSLYRSISENYP A QSPM KPV+AKKYGPE 
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEV 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lsi02G013860 vs. NCBI nr
Match: XP_008457526.1 (PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo] >KAA0033888.1 uncharacterized protein E6C27_scaffold43059G00730 [Cucumis melo var. makuwa] >TYK01272.1 uncharacterized protein E5676_scaffold49G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
          MIS+LAQERLLG ALGS F GVVVFEQRKSLY+SISENYP ATQSPM KPVLAKKYGPEF
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRGW 84

[Close]

BLAST of Lsi02G013860 vs. NCBI nr
Match: XP_023519919.1 (uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISENYPSATQSPMSKPVLAKKYGPEF 60
          MISILAQERLLGAALGSVF GVVVFEQRKSLY SIS+NYP  TQSPM KPVLAKKYGPEF
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYESISKNYPPTTQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRGW 85
          SHLWN AVDQTFGPVIQALSSRGW
Sbjct: 61 SHLWNSAVDQTFGPVIQALSSRGW 84

[Close]

BLAST of Lsi02G013860 vs. TAIR 10
Match: AT2G28430.1 (unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 3.1e-19
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSLYRSISE-NYPSATQSPMSKPVLAKKYGPE 60
          MISILAQERLLG  LGS   G +VFEQRK ++ S+S+    S  Q+ +S  +  KKY  E
Sbjct: 1  MISILAQERLLGYTLGSALTGFIVFEQRKLIHDSVSDPKSQSIDQAQVSDRIFGKKYRME 60

Query: 61 FSHLWNRAVDQTFGPVIQALSSRGW 85
          F+ LWN+AVDQTF P I+ LSSR W
Sbjct: 61 FASLWNKAVDQTFEPAIEYLSSRKW 85

The following BLAST results are available for this feature:

BLAST of Lsi02G013860 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G013860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXB2	8.2e-36	92.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495270 PE=4 SV=1	[more]
A0A5D3BR76	5.3e-35	90.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DSC3	5.3e-35	91.67	uncharacterized protein LOC111023455 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1S3C5P6	5.3e-35	90.48	uncharacterized protein LOC103497197 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HZ79	1.2e-34	91.67	uncharacterized protein LOC111469446 OS=Cucurbita maxima OX=3661 GN=LOC111469446...	[more]

BLAST of Lsi02G013860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152895.1	1.7e-35	92.86	uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus]	[more]
KAG6607218.1	1.7e-35	94.05	hypothetical protein SDJN03_00560, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022156577.1	1.1e-34	91.67	uncharacterized protein LOC111023455 [Momordica charantia]	[more]
XP_008457526.1	1.1e-34	90.48	PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_023519919.1	1.4e-34	91.67	uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi02G013860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28430.1	3.1e-19	56.47	unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37720	OS10G0481400 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR37720:SF2	OS10G0481400 PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013860.1	Lsi02G013860.1	mRNA