Lsi02G011680 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAAATCCATATACGTCAGAAACTTAAATCTCACATTTCCTGTTGTTAAATCCAGTAGACGACTTTCTGAATTGAAGTCTTTCGTAAGATCGTGTACAAATTTGACTGCTAATTTTCAGTTTCCTCCGCGTTGTTCATCGCTGTTTCTTGTTTCTTTAATTTCGGTTGTGAATCTCATCCTCCTCAAGACAAAAGCGAAAACAACTGAGAAATTTTACAACTGGAAAGTGGAATTCCAACATGTTGGCTTCGAAATCTCTGTTCATGGAAGGAGGTGTTTACTCCGACGATCAAGGATCGACGAGGAAGCACTACTACTTCGGCAGTGATGATTTCCTATTAGATCGAAGCTTAAGCGCGAATGAAGATGAGGAATCGAGCGAGCTGTTCGAGATCGAGCTAGGGATTGAGGTACGATCGAATCGTAAACAGGAGGATGATTGCGAGGAAAGTTGGTTCTCCTTTGATTTCCGCAAATCGAACCACTGCGTTTATGTCGGGATTAGCGAAAACTTCGATTCCAGTATGAACGCCTTGCAATGGACTCTCGATTTCGCTGTTTTACCCTCCACTATCGTCTATCTGTTTCATGTCTTCCCCGAGCTTCGCTTCGTCCCAAGCCCATGTATGTCTTCCGCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCTCTCTCTCTCAACCCAGAGAATAAGTAGAATTTGATGCGAAGAAAAACAAACTGGTTTTATGCAGTTGAAGTAATCTGCAGAATGATCTTGTTCTGTTTCGTTATCAATGGCAGAGATGAACCATTTTCAGCTAACTAAAATTGTTGCGTGTTTTGTTATCAAGTGGGAATGCTTCCGAGGAGCCAGGTTAATCCAAAGCTAGTAGAGAAGTTCAAGGCTGAAGAGAGAGCAAAGAGGAGGGAGTTTCTTAACAAGTTTGTTGATACATGTTCTGCTGCTCAGGTATATCAGCAGATTACATTCTGTGCATTTCAGTTGTTTGATTTCATGACCAAGTTTTTACAATACAATTTCATTATGTTTTACAGGTCAATGTAGAGGTTGTGATGATTGAGAGTGATATGGTAGCCAAGGCAATTCTTGATCTTATCTCTCTTCTCCAGATAAGGAAACTGATACTAGGGAGCACCAAAGCCAGGTCTTTCTCTCTCTCTCTCTCTCTTTCTCAATAAACAAACTCACTAATCTTCAGTTTCAAAACCCAAATCTCTCCTGAATTTTGTGAATTTTGGAACCTAGTAGAAAATGGAGATCTAAGACAGGAAAAGGGATAGCCAGACATGTTCTGCAAAATGCAGAAGAATTTTGTGATGTGAAAATCATACGTGAAGGAAAGGAATCTACCTACCAAGCGATTGAGTCGTCGTCTTCTTCTTCTTCATCACACACCCCCTCTCCACATTTAAGCGACAAGAATATCCATTTCAAGAGTGTGCAGAAAGAATATGGCCACAGTGGTTTCTTAACTTGGAGGTGTTTTGGTGGTTAAACTCCATCTTCATGTCTCCTAACCCACTGACCTTATGTTAATAGACACCCTTGGATACACTTCCCAGTGAACTATTCTCAAGCTTTAGATGACAAAAAGTACATACAATAACTTATGCAAAGTGAAAATTAAAATTGTTGACAGGCAAAAACAAGTACAATTCATCAACCCATCTATCAATAACTGAACTTCGAGGTCACCATGAACAGGCAGAATGATTCAAACCCATCTTCTGAGAACAGAACATTGTCGTGTGTACCGTACTACTAAAAGAAATCAAACTCGAGATAATTATCAGATGATTTGGAATCAGGACCAGGTCTAGCCATTACAGCTTTTCCACTGACTGGGGGTGCTGGTGAGGGTATCCTCTCAATCTCTACAGGCTTTGGTACTTCTGGTGGCGAAGCGCAACGTATCAATGCCCAGTTGACACCTTCAAAGAAGGGATGTTGCTTGATCTCAGTTGCCCCTCGTTTGTAAGCTAATCTATGCTGTGGTTCCTTGACAAGCAATCCCCTGATGAGATCCCTTGCAGCAAAACTGACAACTGGTGATTCAGGAAACCGCAAAGGCTGACCAACAACGTTGAACAACGTGGCTCGATTCCCAGATCCCTTAAAAGGAGTTTTACCAAACAACAGTTCGTATAGAAAGATTCCAAAAGTCCACCAGTCAACAGCACTTCCATGACCTTCACCTTTAATGATCTCAGGTGCCAAGTACTCATGTGTACCAACAAATGACATTGATCTCGCCTCCGTAGGCTCTGCAATGAGCTCTGGCAATGGTGTTACCTGGTTTCCTATTTCAGTCTTGGGTTTTCTATCCTTCTTTGATTTGCTAGAGAAAAGTCGGGGAGAGAAGCATGTCGTGGGAACCACACAGGATGGCTGGATGCAGGAAGGTTCGATACAAGCCGGTTGAACACAATAAGCCGAATTCTTTCTCAAGGGTTCAGAATCGGAACATGAACCCTTCACTAATGTTGGACTAACTGCACATCTTAGTGAAAGATCAAAATCTGAAAGCATTATGTGTCCATCTTCTCTCACAAGAACATTCTCAGGCTTAAGGTCCCGGTATACGATCCCAAGCATGTGAAGATACTCAAGTGCTAGGAGAACCTCTGCTACATAAAATCTGCATCAAAATACCACAAGTTTAATAAGCTTTATGCAGGGAAAGAAACATAATGTATGAAAAACATTGGCAGATTGGAATTGCTACTATAACCGCAACTCAATTGTGATTGATACCTGAAATTCACCTCTCATCCTACCATGGTTTAACATGTAAGAATTATATTGGCTACACAATCCACAGAAATGTGATGAAGCTTAATATTATCACAGAATCACATGATCTAACTTAAACTAGGCAGCAAAAAATCTTAACCATGTATATTTTATTTGTGAAAGTTAGAAATTGAAACAAGGGAAACTAAAAGTTGTATTAGTATTGTCACTTTTAAACCCCTAATGATACTGATATAACACTTGTTTCTCCTAC CCAAATCCATATACGTCAGAAACTTAAATCTCACATTTCCTGTTGTTAAATCCAGTAGACGACTTTCTGAATTGAAGTCTTTCGTAAGATCGTGTACAAATTTGACTGCTAATTTTCAGTTTCCTCCGCGTTGTTCATCGCTGTTTCTTGTTTCTTTAATTTCGGTTGTGAATCTCATCCTCCTCAAGACAAAAGCGAAAACAACTGAGAAATTTTACAACTGGAAAGTGGAATTCCAACATGTTGGCTTCGAAATCTCTGTTCATGGAAGGAGGTGTTTACTCCGACGATCAAGGATCGACGAGGAAGCACTACTACTTCGGCAGTGATGATTTCCTATTAGATCGAAGCTTAAGCGCGAATGAAGATGAGGAATCGAGCGAGCTGTTCGAGATCGAGCTAGGGATTGAGGTACGATCGAATCGTAAACAGGAGGATGATTGCGAGGAAAGTTGGTTCTCCTTTGATTTCCGCAAATCGAACCACTGCGTTTATGTCGGGATTAGCGAAAACTTCGATTCCAGTATGAACGCCTTGCAATGGACTCTCGATTTCGCTGTTTTACCCTCCACTATCGTCTATCTGTTTCATGTCTTCCCCGAGCTTCGCTTCGTCCCAAGCCCATTGGGAATGCTTCCGAGGAGCCAGGTTAATCCAAAGCTAGTAGAGAAGTTCAAGGCTGAAGAGAGAGCAAAGAGGAGGGAGTTTCTTAACAAGTTTGTTGATACATGTTCTGCTGCTCAGGTCAATGTAGAGGTTGTGATGATTGAGAGTGATATGGTAGCCAAGGCAATTCTTGATCTTATCTCTCTTCTCCAGATAAGGAAACTGATACTAGGGAGCACCAAAGCCAGAAAATGGAGATCTAAGACAGGAAAAGGGATAGCCAGACATGTTCTGCAAAATGCAGAAGAATTTTGTGATGTGAAAATCATACGTGAAGGAAAGGAATCTACCTACCAAGCGATTGAGTCGTCGTCTTCTTCTTCTTCATCACACACCCCCTCTCCACATTTAAGCGACAAGAATATCCATTTCAAGAGTGTGCAGAAAGAATATGGCCACAGTGGTTTCTTAACTTGGAGGTGTTTTGGTGGTTAAACTCCATCTTCATGTCTCCTAACCCACTGACCTTATGTTAATAGACACCCTTGGATACACTTCCCAGTGAACTATTCTCAAGCTTTAGATGACAAAAAGTACATACAATAACTTATGCAAAGTGAAAATTAAAATTGTTGACAGGCAAAAACAAGTACAATTCATCAACCCATCTATCAATAACTGAACTTCGAGGTCACCATGAACAGGCAGAATGATTCAAACCCATCTTCTGAGAACAGAACATTGTCGTGTGTACCGTACTACTAAAAGAAATCAAACTCGAGATAATTATCAGATGATTTGGAATCAGGACCAGGTCTAGCCATTACAGCTTTTCCACTGACTGGGGGTGCTGGTGAGGGTATCCTCTCAATCTCTACAGGCTTTGGTACTTCTGGTGGCGAAGCGCAACGTATCAATGCCCAGTTGACACCTTCAAAGAAGGGATGTTGCTTGATCTCAGTTGCCCCTCGTTTGTAAGCTAATCTATGCTGTGGTTCCTTGACAAGCAATCCCCTGATGAGATCCCTTGCAGCAAAACTGACAACTGGTGATTCAGGAAACCGCAAAGGCTGACCAACAACGTTGAACAACGTGGCTCGATTCCCAGATCCCTTAAAAGGAGTTTTACCAAACAACAGTTCGTATAGAAAGATTCCAAAAGTCCACCAGTCAACAGCACTTCCATGACCTTCACCTTTAATGATCTCAGGTGCCAAGTACTCATGTGTACCAACAAATGACATTGATCTCGCCTCCGTAGGCTCTGCAATGAGCTCTGGCAATGGTGTTACCTGGTTTCCTATTTCAGTCTTGGGTTTTCTATCCTTCTTTGATTTGCTAGAGAAAAGTCGGGGAGAGAAGCATGTCGTGGGAACCACACAGGATGGCTGGATGCAGGAAGGTTCGATACAAGCCGGTTGAACACAATAAGCCGAATTCTTTCTCAAGGGTTCAGAATCGGAACATGAACCCTTCACTAATGTTGGACTAACTGCACATCTTAGTGAAAGATCAAAATCTGAAAGCATTATGTGTCCATCTTCTCTCACAAGAACATTCTCAGGCTTAAGGTCCCGGTATACGATCCCAAGCATGTGAAGATACTCAAGTGCTAGGAGAACCTCTGCTACATAAAATCTGCATCAAAATACCACAAGTTTAATAAGCTTTATGCAGGGAAAGAAACATAATGTATGAAAAACATTGGCAGATTGGAATTGCTACTATAACCGCAACTCAATTGTGATTGATACCTGAAATTCACCTCTCATCCTACCATGGTTTAACATGTAAGAATTATATTGGCTACACAATCCACAGAAATGTGATGAAGCTTAATATTATCACAGAATCACATGATCTAACTTAAACTAGGCAGCAAAAAATCTTAACCATGTATATTTTATTTGTGAAAGTTAGAAATTGAAACAAGGGAAACTAAAAGTTGTATTAGTATTGTCACTTTTAAACCCCTAATGATACTGATATAACACTTGTTTCTCCTAC ATGTTGGCTTCGAAATCTCTGTTCATGGAAGGAGGTGTTTACTCCGACGATCAAGGATCGACGAGGAAGCACTACTACTTCGGCAGTGATGATTTCCTATTAGATCGAAGCTTAAGCGCGAATGAAGATGAGGAATCGAGCGAGCTGTTCGAGATCGAGCTAGGGATTGAGGTACGATCGAATCGTAAACAGGAGGATGATTGCGAGGAAAGTTGGTTCTCCTTTGATTTCCGCAAATCGAACCACTGCGTTTATGTCGGGATTAGCGAAAACTTCGATTCCAGTATGAACGCCTTGCAATGGACTCTCGATTTCGCTGTTTTACCCTCCACTATCGTCTATCTGTTTCATGTCTTCCCCGAGCTTCGCTTCGTCCCAAGCCCATTGGGAATGCTTCCGAGGAGCCAGGTTAATCCAAAGCTAGTAGAGAAGTTCAAGGCTGAAGAGAGAGCAAAGAGGAGGGAGTTTCTTAACAAGTTTGTTGATACATGTTCTGCTGCTCAGGTCAATGTAGAGGTTGTGATGATTGAGAGTGATATGGTAGCCAAGGCAATTCTTGATCTTATCTCTCTTCTCCAGATAAGGAAACTGATACTAGGGAGCACCAAAGCCAGAAAATGGAGATCTAAGACAGGAAAAGGGATAGCCAGACATGTTCTGCAAAATGCAGAAGAATTTTGTGATGTGAAAATCATACGTGAAGGAAAGGAATCTACCTACCAAGCGATTGAGTCGTCGTCTTCTTCTTCTTCATCACACACCCCCTCTCCACATTTAAGCGACAAGAATATCCATTTCAAGAGTGTGCAGAAAGAATATGGCCACAGTGGTTTCTTAACTTGGAGGTGTTTTGGTGGTTAA MLASKSLFMEGGVYSDDQGSTRKHYYFGSDDFLLDRSLSANEDEESSELFEIELGIEVRSNRKQEDDCEESWFSFDFRKSNHCVYVGISENFDSSMNALQWTLDFAVLPSTIVYLFHVFPELRFVPSPLGMLPRSQVNPKLVEKFKAEERAKRREFLNKFVDTCSAAQVNVEVVMIESDMVAKAILDLISLLQIRKLILGSTKARKWRSKTGKGIARHVLQNAEEFCDVKIIREGKESTYQAIESSSSSSSSHTPSPHLSDKNIHFKSVQKEYGHSGFLTWRCFGG Homology
BLAST of Lsi02G011680 vs. ExPASy Swiss-Prot
Match: Q8GUH1 (U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 1.1e-04 Identity = 51/202 (25.25%), Postives = 87/202 (43.07%), Query Frame = 0
BLAST of Lsi02G011680 vs. ExPASy Swiss-Prot
Match: Q9SW11 (U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 1.1e-04 Identity = 48/182 (26.37%), Postives = 84/182 (46.15%), Query Frame = 0
BLAST of Lsi02G011680 vs. ExPASy TrEMBL
Match: A0A1S3CLA7 (U-box domain-containing protein 35-like OS=Cucumis melo OX=3656 GN=LOC103502223 PE=4 SV=1) HSP 1 Score: 423.7 bits (1088), Expect = 6.1e-115 Identity = 221/264 (83.71%), Postives = 239/264 (90.53%), Query Frame = 0
BLAST of Lsi02G011680 vs. ExPASy TrEMBL
Match: A0A6J1EH15 (uncharacterized protein LOC111434029 OS=Cucurbita moschata OX=3662 GN=LOC111434029 PE=4 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 1.6e-110 Identity = 221/289 (76.47%), Postives = 248/289 (85.81%), Query Frame = 0
BLAST of Lsi02G011680 vs. ExPASy TrEMBL
Match: A0A6J1IAG5 (U-box domain-containing protein 35-like OS=Cucurbita maxima OX=3661 GN=LOC111471613 PE=4 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 8.0e-107 Identity = 221/290 (76.21%), Postives = 246/290 (84.83%), Query Frame = 0
BLAST of Lsi02G011680 vs. ExPASy TrEMBL
Match: A0A6J1CMT0 (U-box domain-containing protein 35-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111012574 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 3.0e-106 Identity = 213/282 (75.53%), Postives = 239/282 (84.75%), Query Frame = 0
BLAST of Lsi02G011680 vs. ExPASy TrEMBL
Match: A0A6J1CKY9 (uncharacterized protein LOC111012574 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012574 PE=4 SV=1) HSP 1 Score: 390.6 bits (1002), Expect = 5.7e-105 Identity = 214/285 (75.09%), Postives = 239/285 (83.86%), Query Frame = 0
BLAST of Lsi02G011680 vs. NCBI nr
Match: XP_038894104.1 (U-box domain-containing protein 35-like [Benincasa hispida]) HSP 1 Score: 457.6 bits (1176), Expect = 7.9e-125 Identity = 240/264 (90.91%), Postives = 250/264 (94.70%), Query Frame = 0
BLAST of Lsi02G011680 vs. NCBI nr
Match: XP_008464309.1 (PREDICTED: U-box domain-containing protein 35-like [Cucumis melo]) HSP 1 Score: 423.7 bits (1088), Expect = 1.3e-114 Identity = 221/264 (83.71%), Postives = 239/264 (90.53%), Query Frame = 0
BLAST of Lsi02G011680 vs. NCBI nr
Match: XP_022927094.1 (uncharacterized protein LOC111434029 [Cucurbita moschata]) HSP 1 Score: 409.1 bits (1050), Expect = 3.2e-110 Identity = 221/289 (76.47%), Postives = 248/289 (85.81%), Query Frame = 0
BLAST of Lsi02G011680 vs. NCBI nr
Match: KAG6583671.1 (U-box domain-containing protein 35, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 404.4 bits (1038), Expect = 7.9e-109 Identity = 219/289 (75.78%), Postives = 247/289 (85.47%), Query Frame = 0
BLAST of Lsi02G011680 vs. NCBI nr
Match: XP_023520268.1 (U-box domain-containing protein 35-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 398.3 bits (1022), Expect = 5.7e-107 Identity = 217/290 (74.83%), Postives = 246/290 (84.83%), Query Frame = 0
BLAST of Lsi02G011680 vs. TAIR 10
Match: AT5G47740.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 134.8 bits (338), Expect = 1.1e-31 Identity = 77/173 (44.51%), Postives = 113/173 (65.32%), Query Frame = 0
BLAST of Lsi02G011680 vs. TAIR 10
Match: AT5G47740.2 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 131.3 bits (329), Expect = 1.2e-30 Identity = 78/175 (44.57%), Postives = 113/175 (64.57%), Query Frame = 0
BLAST of Lsi02G011680 vs. TAIR 10
Match: AT5G65500.1 (U-box domain-containing protein kinase family protein ) HSP 1 Score: 70.9 bits (172), Expect = 1.9e-12 Identity = 49/157 (31.21%), Postives = 78/157 (49.68%), Query Frame = 0
BLAST of Lsi02G011680 vs. TAIR 10
Match: AT3G61410.1 (BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 232 Blast hits to 229 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06 Identity = 40/159 (25.16%), Postives = 74/159 (46.54%), Query Frame = 0
BLAST of Lsi02G011680 vs. TAIR 10
Match: AT2G45910.1 (U-box domain-containing protein kinase family protein ) HSP 1 Score: 48.9 bits (115), Expect = 7.9e-06 Identity = 51/202 (25.25%), Postives = 87/202 (43.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
|