Lsi02G008550 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G008550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L32, putative
Location	chr02: 8025996 .. 8028325 (-)
RNA-Seq Expression	Lsi02G008550
Synteny	Lsi02G008550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCAAAGGAAACCCTAGTTTCTGTGAGTACTCTCTATTCCGCCGCTAGGGTTTCATTTGTTATTATCCCATTTGAACTCTGTTCATTTGCTATTGTGTTGATAATATTTCATTATGTAGTTTGAGTGTTTCTCAATCGTCTTGGTTAATCCGTTGTGGTTCACCCACCGTTTCAACTGTATGTTATTGTCGTGTCAGTTAGGGTTGGATTTAAAGTTTTATAGGTTTTGGTACGTTTGTTTGAGCTGATGATAATCGTACTTGTTATTAAATTTGTAGGTATAAGCGAAAATGGCGGTGCCTTTGTTGTCGAAGAAGATCGTGAAGAAGAGGACCAAGAAGTTCAAGAGGCCCCAGAGTGATCGAAAGATCTCCGTCAAGGTATTTTAATTTTCTTTGCCTTTTCGTTTTCTATATTTCTGTACATCATAGAATGTGCAATAAGGAACATGATGATATGAATTGTCGCCCCAGTCTTAGTTGTATCTATTGATGCACAGTGGTGACTGACAGAGTATCTGATTCTTGTTAGTTAACAGTTCATTCATTGTGATTTAATTTTAGAAGAAAATTTCACTAGGTTTTCTGGTTGTAGTTTAACTGTATTTGATAAGACTTGTTTATTAGGATCTGGCGATAAAATGATATCCAGACTGACTTGTGTCTTCGGATGCAGTCTGATGAATCAAAGATCGACTAGCTGATCCTCCTTTCGGAATTATATATTATTTTAATCTCATTCAAGAAATTTAATTTCTTCTCTGTTTTGCATTTAAATTTCGGTCGAATGTACTTATTTATGGGAAATAATGATAATATGTTGAGGCTCAGTCTTCTGTCTCTTGATGGAAGATGGTGTGGTCAACATTTTAATGTTCTCACCAAGCAGTCTTGTACCTTGTTTCCTTTGACACTAATTTCAAGCATTTTCTTTTTTCATAAGATATGCAACAAGACGTGATGATTATACCCATCGTTTCTGCAATTGAATGATGAATATTCTCATGCACTACCATCTGATCTTCGTTGTATATTCCAAACTGATTTTGTTTTTAACACATTTTTTTCATTTTATTTTCTGAACTTTTTACTTATTGTCGCAACCTATGATGCAAACTACCCAATTTACTGATTTTCCGTGATTATATAATCAAATTTCACCATCTTTCGGCTGAGGTTGCAATACATGTATTTCTTTTCATTGACAATAGCTATGTATTTGAAATTGCCCGTGGTATCTAATGTCCAGACCTTTATTTAAATGGTTGGATGTTTCGTTTTGAGGGCATAGAATAATTATACACAGGTCTTGCGACACAGTTAGCTGCTTATTACGCATAAGCTTTCTGTTACTAAAACCCTGCGTACATATATTTATTAAATACTATTTGCTTTCTGTTTATTTCACGCAATCAATTTGGTTTTGCTCATCTTGAGATTGTTCATCTGACAGGAAAACTGGAGAAGACCAAAGGGTATTGATTCCAGAGTGAGAAGAAAGTTTAAAGGATGCACGCTGATGCCAAATATTGGTTACGGCACTGACAAGAAGACCCGCCACTACCTGCCTAATGGGTTCAAGAAGTTCGTTGTTCATAATGTCAAGGAACTCGAACTCTTGATGATGCACAACAGGTTTGTGGAAACCTCTGATTTTGCTTAATCCTTCGTCTTTGTACATGCTGCTTTTGTTTGATCTTTGCTGGTTTGGTTTTAATGCAGAACTTACTGTGCTGAGATTGCCCACGATGTTTCAACAAGGAAGAGGAAAGAGATTGTTGAGAGGGCAGCTCAACTCGATGTTGTAGTTACCAACAAGCTTGCTAGGTTGCGCAGCCAAGAGGATGAATGAACAATTTAGATCGTTAAATGCAGTTTCCATCATGCTTTGTAGTGAGATTTGTTTAATATATATCTTTTTTGGTTCAAGAGATTTTGATATTTAATGACTACTGAATCTGAATTTTTAAACTGTCACTTCAACATTATAATTTCGAATTTTAAATTTTGAGATGTTTGAATTTTAAAGATGATTCCCTTATCATTGCATGGCTTGGTGGCGCGCTTCAGTTGGTCTGCCGTTTTGATATTTAAACCCAATTTTTTTGTAAATAAGATTTGGGGTAATATAAAGCTGGAATGAAGTGTATTTACTCCTAAGTTATTGGTTTATATGCTTGTTAATAAATTGATACTGAATTGACCACTTTTGCTTTCTTATTTATTTTTAATTGTTTTCTAAGTTTGGTCAAGATAATTGTCTAATACCATGGTCAAGCCAGAATTCAAATTGTTACATCTTGGTTTCTAATTTAAACAGAGCTTCATAT

mRNA sequence

GGCCAAAGGAAACCCTAGTTTCTGTGAGTACTCTCTATTCCGCCGCTAGGGTTTCATTTGTTATTATCCCATTTGAACTCTGTTCATTTGCTATTGTGTTGATAATATTTCATTATGTAGTTTGAGTGTTTCTCAATCGTCTTGGTTAATCCGTTGTGGTTCACCCACCGTTTCAACTGTATAAGCGAAAATGGCGGTGCCTTTGTTGTCGAAGAAGATCGTGAAGAAGAGGACCAAGAAGTTCAAGAGGCCCCAGAGTGATCGAAAGATCTCCGTCAAGGAAAACTGGAGAAGACCAAAGGGTATTGATTCCAGAGTGAGAAGAAAGTTTAAAGGATGCACGCTGATGCCAAATATTGGTTACGGCACTGACAAGAAGACCCGCCACTACCTGCCTAATGGGTTCAAGAAGTTCGTTGTTCATAATGTCAAGGAACTCGAACTCTTGATGATGCACAACAGAACTTACTGTGCTGAGATTGCCCACGATGTTTCAACAAGGAAGAGGAAAGAGATTGTTGAGAGGGCAGCTCAACTCGATGTTGTAGTTACCAACAAGCTTGCTAGGTTGCGCAGCCAAGAGGATGAATGAACAATTTAGATCGTTAAATGCAGTTTCCATCATGCTTTGTAGTGAGATTTGTTTAATATATATCTTTTTTGGTTCAAGAGATTTTGATATTTAATGACTACTGAATCTGAATTTTTAAACTGTCACTTCAACATTATAATTTCGAATTTTAAATTTTGAGATGTTTGAATTTTAAAGATGATTCCCTTATCATTGCATGGCTTGGTGGCGCGCTTCAGTTGGTCTGCCGTTTTGATATTTAAACCCAATTTTTTTGTAAATAAGATTTGGGGTAATATAAAGCTGGAATGAAGTGTATTTACTCCTAAGTTATTGGTTTATATGCTTGTTAATAAATTGATACTGAATTGACCACTTTTGCTTTCTTATTTATTTTTAATTGTTTTCTAAGTTTGGTCAAGATAATTGTCTAATACCATGGTCAAGCCAGAATTCAAATTGTTACATCTTGGTTTCTAATTTAAACAGAGCTTCATAT

Coding sequence (CDS)

ATGGCGGTGCCTTTGTTGTCGAAGAAGATCGTGAAGAAGAGGACCAAGAAGTTCAAGAGGCCCCAGAGTGATCGAAAGATCTCCGTCAAGGAAAACTGGAGAAGACCAAAGGGTATTGATTCCAGAGTGAGAAGAAAGTTTAAAGGATGCACGCTGATGCCAAATATTGGTTACGGCACTGACAAGAAGACCCGCCACTACCTGCCTAATGGGTTCAAGAAGTTCGTTGTTCATAATGTCAAGGAACTCGAACTCTTGATGATGCACAACAGAACTTACTGTGCTGAGATTGCCCACGATGTTTCAACAAGGAAGAGGAAAGAGATTGTTGAGAGGGCAGCTCAACTCGATGTTGTAGTTACCAACAAGCTTGCTAGGTTGCGCAGCCAAGAGGATGAATGA

Protein sequence

MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE

Homology

[Close]

BLAST of Lsi02G008550 vs. ExPASy Swiss-Prot
Match: P49211 (60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2)

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-60
Identity = 115/133 (86.47%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KK+VKKR+ KF RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN  ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. ExPASy Swiss-Prot
Match: Q9FHG2 (60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-59
Identity = 112/133 (84.21%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KK+VKKR+ KF RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. ExPASy Swiss-Prot
Match: E2RKA8 (60S ribosomal protein L32 OS=Canis lupus familiaris OX=9615 GN=RPL32 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-45
Identity = 90/130 (69.23%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 4   PLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKRTKKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNVKELE+L+M N++YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]

BLAST of Lsi02G008550 vs. ExPASy Swiss-Prot
Match: P62910 (60S ribosomal protein L32 OS=Homo sapiens OX=9606 GN=RPL32 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-45
Identity = 90/130 (69.23%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 4   PLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKRTKKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNVKELE+L+M N++YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]

BLAST of Lsi02G008550 vs. ExPASy Swiss-Prot
Match: Q76KA3 (60S ribosomal protein L32 OS=Macaca fascicularis OX=9541 GN=RPL32 PE=2 SV=3)

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-45
Identity = 90/130 (69.23%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 4   PLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKRTKKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNVKELE+L+M N++YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]

BLAST of Lsi02G008550 vs. ExPASy TrEMBL
Match: A0A1S3B8Z6 (60S ribosomal protein L32-1 OS=Cucumis melo OX=3656 GN=LOC103487346 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.2e-66
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. ExPASy TrEMBL
Match: A0A6J1K6F1 (60S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111490500 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRT KFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRTTKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+LMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. ExPASy TrEMBL
Match: A0A6J1GUI9 (60S ribosomal protein L32-1-like OS=Cucurbita moschata OX=3662 GN=LOC111457242 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRT KFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRTTKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+LMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. ExPASy TrEMBL
Match: A0A0A0LXN1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G462020 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLSKKIVKKRT+KFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTQKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. ExPASy TrEMBL
Match: A0A6J1KGP3 (60S ribosomal protein L32-1 OS=Cucurbita maxima OX=3661 GN=LOC111495610 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.6e-65
Identity = 129/133 (96.99%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLSKKIVKKRT+KFKRPQSDRKISVKE+WRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+LMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEILMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. NCBI nr
Match: XP_038894346.1 (60S ribosomal protein L32-1 [Benincasa hispida])

HSP 1 Score: 261.2 bits (666), Expect = 5.0e-66
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 21  MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 80

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 81  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 140

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 141 TNKLARLRSQEDE 153

[Close]

BLAST of Lsi02G008550 vs. NCBI nr
Match: XP_008443854.1 (PREDICTED: 60S ribosomal protein L32-1 [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. NCBI nr
Match: XP_011657475.1 (60S ribosomal protein L32-1 [Cucumis sativus] >KGN65577.1 hypothetical protein Csa_019557 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLSKKIVKKRT+KFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTQKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. NCBI nr
Match: XP_022955208.1 (60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022955210.1 60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022994918.1 60S ribosomal protein L32-1-like [Cucurbita maxima] >XP_022994919.1 60S ribosomal protein L32-1-like [Cucurbita maxima] >KAG7012508.1 60S ribosomal protein L32-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRT KFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRTTKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+LMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. NCBI nr
Match: XP_022927470.1 (60S ribosomal protein L32-1 [Cucurbita moschata] >XP_022927471.1 60S ribosomal protein L32-1 [Cucurbita moschata] >XP_023001487.1 60S ribosomal protein L32-1 [Cucurbita maxima] >XP_023001488.1 60S ribosomal protein L32-1 [Cucurbita maxima] >KAG6583929.1 60S ribosomal protein L32-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019543.1 60S ribosomal protein L32-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.9 bits (655), Expect = 9.5e-65
Identity = 129/133 (96.99%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLSKKIVKKRT+KFKRPQSDRKISVKE+WRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+LMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEILMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. TAIR 10
Match: AT4G18100.1 (Ribosomal protein L32e )

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-61
Identity = 115/133 (86.47%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KK+VKKR+ KF RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN  ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. TAIR 10
Match: AT5G46430.1 (Ribosomal protein L32e )

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-60
Identity = 112/133 (84.21%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KK+VKKR+ KF RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]

BLAST of Lsi02G008550 vs. TAIR 10
Match: AT5G46430.2 (Ribosomal protein L32e )

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-60
Identity = 112/133 (84.21%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KK+VKKR+ KF RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

The following BLAST results are available for this feature:

BLAST of Lsi02G008550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49211	2.5e-60	86.47	60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2	[more]
Q9FHG2	1.6e-59	84.21	60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1	[more]
E2RKA8	2.3e-45	69.23	60S ribosomal protein L32 OS=Canis lupus familiaris OX=9615 GN=RPL32 PE=1 SV=1	[more]
P62910	2.3e-45	69.23	60S ribosomal protein L32 OS=Homo sapiens OX=9606 GN=RPL32 PE=1 SV=2	[more]
Q76KA3	2.3e-45	69.23	60S ribosomal protein L32 OS=Macaca fascicularis OX=9541 GN=RPL32 PE=2 SV=3	[more]

BLAST of Lsi02G008550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8Z6	9.2e-66	98.50	60S ribosomal protein L32-1 OS=Cucumis melo OX=3656 GN=LOC103487346 PE=3 SV=1	[more]
A0A6J1K6F1	2.7e-65	97.74	60S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111490500 PE=...	[more]
A0A6J1GUI9	2.7e-65	97.74	60S ribosomal protein L32-1-like OS=Cucurbita moschata OX=3662 GN=LOC111457242 P...	[more]
A0A0A0LXN1	2.7e-65	97.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G462020 PE=3 SV=1	[more]
A0A6J1KGP3	4.6e-65	96.99	60S ribosomal protein L32-1 OS=Cucurbita maxima OX=3661 GN=LOC111495610 PE=3 SV=...	[more]

BLAST of Lsi02G008550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894346.1	5.0e-66	99.25	60S ribosomal protein L32-1 [Benincasa hispida]	[more]
XP_008443854.1	1.9e-65	98.50	PREDICTED: 60S ribosomal protein L32-1 [Cucumis melo]	[more]
XP_011657475.1	5.6e-65	97.74	60S ribosomal protein L32-1 [Cucumis sativus] >KGN65577.1 hypothetical protein C...	[more]
XP_022955208.1	5.6e-65	97.74	60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022955210.1 60S riboso...	[more]
XP_022927470.1	9.5e-65	96.99	60S ribosomal protein L32-1 [Cucurbita moschata] >XP_022927471.1 60S ribosomal p...	[more]

BLAST of Lsi02G008550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18100.1	1.8e-61	86.47	Ribosomal protein L32e	[more]
AT5G46430.1	1.2e-60	84.21	Ribosomal protein L32e	[more]
AT5G46430.2	1.2e-60	84.21	Ribosomal protein L32e	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001515	Ribosomal protein L32e	SMART	SM01393	Ribosomal_L32e_2	coord: 15..122 e-value: 5.4E-74 score: 261.8
IPR001515	Ribosomal protein L32e	PFAM	PF01655	Ribosomal_L32e	coord: 15..122 e-value: 4.5E-50 score: 168.6
IPR001515	Ribosomal protein L32e	PANTHER	PTHR23413	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	coord: 1..133
IPR001515	Ribosomal protein L32e	CDD	cd00513	Ribosomal_L32_L32e	coord: 18..122 e-value: 1.52265E-60 score: 179.648
None	No IPR available	PANTHER	PTHR23413:SF18	60S RIBOSOMAL PROTEIN L32-1-LIKE	coord: 1..133
IPR036351	Ribosomal protein L32e superfamily	SUPERFAMILY	52042	Ribosomal protein L32e	coord: 2..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G008550.1	Lsi02G008550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004842	ubiquitin-protein transferase activity