Lsi02G007910 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G007910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor TCP10-like
Location	chr02: 7307416 .. 7309986 (-)
RNA-Seq Expression	Lsi02G007910
Synteny	Lsi02G007910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTCAAAGGTTTTCTCTTAATGATGAAGATAAGAAGACAGCGAAGCTCGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGCCGGCGCTGGCAAGGTTTACACCTCAAAAGGCCTCCGAGCAAGGAGGCTTCGGCTGTCGGCTCCGACCGCCATTGAATTCTACGACGTTCAGGATCGCCTTGGTTGTGACAGATCAACTGAAGCCATCGATTGGCTTCTTCAGAATGCGAAATCCGCCATTGATGCTCTTTCTCGACCATTAGAAACAGAGGACGGCGAGAGTAGAAAACAGAGTTTCAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCTTCTTCCTCCCAGCTTCAGTCTTACCCACTTGAAAATTTCTCCCAAAAAGTTTGATTTTTCTTTCTTTGGAAGTTTTGTTTTCATTATTTATACTTTTATTACAGTTGCTGGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTTTTCGGTCCAATGATTTTGAATGCCACGCCGGAGGAATTTTCCGGCGTCCAGCCAACGTGTCCAAGTCAGAGCAATGTCGGAACTGGTTTTCTTTCCTTTCCGATCTGGGAATAGCAGCCGCCAGCCACCCGGTGATTTTCGAAGGTGAATTTGAATATTAATTTAACATTTGTTTTTATAAAAATAGTTTTTTTAAAAAATATATTAATTTCTACCTCAGCTGAAACTCTAAACTAATAATAGTATAAATTTAAACTCTTAAATTTCAACCAAAATCTAAACTTCAAAATATATCAATTAACACCCTTCTTTTTACTAAAACATTAGTGAAATTAATAATTATTTCACTTAAACCTCCTAAACTTTGATAAGAAAATCAATTTAGACTCCGATTAAGATTTCTTTTTAGAATTTTCTATGCATAAATTTTAATAATTTATTTTGTAAAACCAATATTTTAAAGAAGTCTACACATATATGAAAATTGATGCTTGAATAATTTTCAATGGTAATAAAAATTATTAAGAGTCTAAACTTGATTTGCTTATGAAATTCAAAGTTTAATTGAATAAATTTTTTGGTTAAATGAGTAATATCTAACTGCTAATTAGACTACAACTATGTGATTTGGCCACGACACACACGTGATTATATGAAAAATAGTTGTAGCTCAATTAATAGTCACTTTTAAAGAGTGTTTGGGGCATTAAACTGGTTATTATAGTTAGTTTGAGGTGCATATTATTTTAGTCTATGTTATTGGAATGAGTTTGGATTGTAATGTAATACAAAACTCATGTTTGGATTGAGCATTTTGGGTCCAACTTGTAATATTAAACTCATTGCGTTTCGACAATTTTTAACCAAACCCTCTTTCCCACTATTTTCATATTTCATGATCCCATTTTTGTTCCGCTTTCGATACCTCACGCATTCTAACACTTTTCTAATTCACATTAATCCTAATTACAATTCAGCCTCCTAAACAGCCCCTAATAGTATTTGAGATGCAAACTATTTTTCGTCTTGGTAGGAAATAGTAAACACTAACAAAGAAGGATTTAAAATATAATATTGTAGATTATAATAGTTGGAAACACCACCTATAATTATTTGAGTTTCAAACATGGGGTGGATTAATACTTCACTTTCCCCAACTTGAAGTTGGGGAATCAAATTTAAAAGTTAATATTTTGAAGGATAAATTATACTAAATACCTCTAAAGTTTATATTGTTTTAAAAATACTTTCGAACTTTCAAAAGTTTCAAAAATACTCATAAACTTTCAGAATAAGTTAGAAAATATCATTACCGTTAGTTTTGGATGAAAACCACTAGTGTTTTGGGTAAAAAATACCCTGAATTTTCAAAAGTTTTAAAAATATCCTTAAACAAAAAATTTAAAAAAAAAGTTCAAAAATACCCTTCATGAATTTTTGTTCATATACTAATCGTAAGTATATTTTTTAAATTTTTTTTAAAATTTAAGGGTATTTTTGAAAATTCTTGAAAATTTAATTTTTGAAACAAAATACTTTCCATTCAAAATTAACGATAAATATATTTTTAAATTATTTTTAAAAATTTAAGAGTATTTTTTAAACTTTTAAAAGTTTCCTAAACGTTTTTTACACAAAATACAACGTTAGAGTGTATTTGTCATACCGTACCTATGGATGTTTTTTCTACTTTTTGTTGAAGCTAAGCTGTAACCTGGGAAATGAAGTTGGGATCCAGAGAATAGGGTTAGTTTATGAATTTAACCTGCAATCATTAGGTTTTTGTTTTTGTTGAAACGTCTGTGTTTCAGATGGATTCTCGGAGTTTCACGCGCCGCCGGATCATTGAATTCAAACTCAGAGAAATATGATTTCTGACGGTGTTATTGCATCAGAATCAGTGGCATCAATGACAACCATCTCCTTTTTCTTTTTGTTTTTGGGTTAGGTCATCACTGGACACACTCAATTTCTAAACATTATTTTCTTATTTTACCATTTGCTTTTCTCAAGGGAATTTCTATGTCACTTGATTAATTCAATATTTATTTTCAAATATTCATGGTAACTTATTTTTCC

mRNA sequence

ATGGGTTCTCAAAGGTTTTCTCTTAATGATGAAGATAAGAAGACAGCGAAGCTCGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGCCGGCGCTGGCAAGGTTTACACCTCAAAAGGCCTCCGAGCAAGGAGGCTTCGGCTGTCGGCTCCGACCGCCATTGAATTCTACGACGTTCAGGATCGCCTTGGTTGTGACAGATCAACTGAAGCCATCGATTGGCTTCTTCAGAATGCGAAATCCGCCATTGATGCTCTTTCTCGACCATTAGAAACAGAGGACGGCGAGAGTAGAAAACAGAGTTTCAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCTTCTTCCTCCCAGCTTCAGTCTTACCCACTTGAAAATTTCTCCCAAAAAGGCAACCTCTCTGTTTTCGGTCCAATGATTTTGAATGCCACGCCGGAGGAATTTTCCGGCGTCCAGCCAACGTGTCCAAGTCAGAGCAATGTCGGAACTGGTTTTCTTTCCTTTCCGATCTGGGAATAGCAGCCGCCAGCCACCCGGTGATTTTCGAAGATGGATTCTCGGAGTTTCACGCGCCGCCGGATCATTGAATTCAAACTCAGAGAAATATGATTTCTGACGGTGTTATTGCATCAGAATCAGTGGCATCAATGACAACCATCTCCTTTTTCTTTTTGTTTTTGGGTTAGGTCATCACTGGACACACTCAATTTCTAAACATTATTTTCTTATTTTACCATTTGCTTTTCTCAAGGGAATTTCTATGTCACTTGATTAATTCAATATTTATTTTCAAATATTCATGGTAACTTATTTTTCC

Coding sequence (CDS)

ATGGGTTCTCAAAGGTTTTCTCTTAATGATGAAGATAAGAAGACAGCGAAGCTCGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGCCGGCGCTGGCAAGGTTTACACCTCAAAAGGCCTCCGAGCAAGGAGGCTTCGGCTGTCGGCTCCGACCGCCATTGAATTCTACGACGTTCAGGATCGCCTTGGTTGTGACAGATCAACTGAAGCCATCGATTGGCTTCTTCAGAATGCGAAATCCGCCATTGATGCTCTTTCTCGACCATTAGAAACAGAGGACGGCGAGAGTAGAAAACAGAGTTTCAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCTTCTTCCTCCCAGCTTCAGTCTTACCCACTTGAAAATTTCTCCCAAAAAGGCAACCTCTCTGTTTTCGGTCCAATGATTTTGAATGCCACGCCGGAGGAATTTTCCGGCGTCCAGCCAACGTGTCCAAGTCAGAGCAATGTCGGAACTGGTTTTCTTTCCTTTCCGATCTGGGAATAG

Protein sequence

MGSQRFSLNDEDKKTAKLGRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVPSSSSSQLQSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE

Homology

[Close]

BLAST of Lsi02G007910 vs. ExPASy Swiss-Prot
Match: Q9MAH8 (Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-14
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KG R RR+RLSAPTAI+FYDVQDRLG DR ++A+DWL+  A
Sbjct: 48  GRKDRH-------SKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKA 107

Query: 79  KSAIDALSR 88
           KSAID L++
Sbjct: 108 KSAIDDLAQ 109

[Close]

BLAST of Lsi02G007910 vs. ExPASy Swiss-Prot
Match: O82277 (Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.8e-14
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 19 GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
          GR+DR         KV+TSKG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ A
Sbjct: 28 GRKDRH-------SKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 87

Query: 79 KSAIDAL 86
          K+AID L
Sbjct: 88 KTAIDKL 87

[Close]

BLAST of Lsi02G007910 vs. ExPASy Swiss-Prot
Match: A2ZMR9 (Transcription factor PCF8 OS=Oryza sativa subsp. indica OX=39946 GN=PCF8 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 11  EDKKTAKLGRRDRRLRSSAGA----GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDR 70
           E   TA   R  R  R++AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG D+
Sbjct: 26  ESAATAAAWRTSRVARAAAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQ 85

Query: 71  STEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVPSSSSSQLQ 120
            ++AI+WL++ A +AIDAL          S   SF+ P+ A+S P  ++   +
Sbjct: 86  PSKAIEWLIRAAAAAIDAL---------PSLDCSFALPAAASSPPPPAADDAE 129

[Close]

BLAST of Lsi02G007910 vs. ExPASy Swiss-Prot
Match: Q2QM59 (Transcription factor PCF8 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF8 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 15  TAKLGRRDRRLRSSAGA----GKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEA 74
           TA   R  R  R++AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG D+ ++A
Sbjct: 30  TAAAWRTSRVARAAAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKA 89

Query: 75  IDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVPSSSSSQLQ 120
           I+WL++ A +AIDAL          S   SF+ P+ A+S P  ++   +
Sbjct: 90  IEWLIRAAAAAIDAL---------PSLDCSFALPAAASSPPPPAADDAE 129

[Close]

BLAST of Lsi02G007910 vs. ExPASy Swiss-Prot
Match: A2WM14 (Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-13
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T++G R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++NA
Sbjct: 212 GRKDRH-------SKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNA 271

Query: 79  KSAIDAL 86
           K AID L
Sbjct: 272 KDAIDKL 271

[Close]

BLAST of Lsi02G007910 vs. ExPASy TrEMBL
Match: A0A0A0LUP1 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G077150 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.7e-60
Identity = 128/172 (74.42%), Postives = 141/172 (81.98%), Query Frame = 0


Query: 7   SLNDEDKKTAKLGRRDRRLRSS----AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRL 66
           SL+D DK T K+ RR+RRL S+    AG GKVYTSKGLRARRLRLSAPTAI+FYD+QDRL
Sbjct: 3   SLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRL 62

Query: 67  GCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP---SMAASVPSSSSSQLQ 126
           GC R TEAIDWLL NAKSAIDALSRPL+TED + RKQSFS P   S ++S  SSSSSQ Q
Sbjct: 63  GCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQ 122

Query: 127 SYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           SYPL+NFSQKGNLSVF PMILNAT  EFSG QP CPSQSN+G GF  FP+WE
Sbjct: 123 SYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 174

[Close]

BLAST of Lsi02G007910 vs. ExPASy TrEMBL
Match: A0A5A7UTZ9 (Transcription factor TCP10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002100 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 7.5e-60
Identity = 130/168 (77.38%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 7   SLNDEDKKTAKLGRRDRRLRSS--AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGC 66
           SL+D DKK AK+GRR+RRL SS  AGAGKVYTSKGLRARRLRLSAPTAI+FYD+QDRLGC
Sbjct: 3   SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGC 62

Query: 67  DRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQSYPL 126
            R TEAIDWLLQNAK AIDALSRPL+TED + RKQ FS P     VP SSSSSQ QSYPL
Sbjct: 63  GRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLP-----VPSSSSSSQFQSYPL 122

Query: 127 ENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           +NFSQKGNLSVF PMILN T   FSG QP CPSQSNVG GF  FP+WE
Sbjct: 123 QNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE 165

[Close]

BLAST of Lsi02G007910 vs. ExPASy TrEMBL
Match: A0A1S3B7T4 (transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 7.5e-60
Identity = 130/168 (77.38%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 7   SLNDEDKKTAKLGRRDRRLRSS--AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGC 66
           SL+D DKK AK+GRR+RRL SS  AGAGKVYTSKGLRARRLRLSAPTAI+FYD+QDRLGC
Sbjct: 3   SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGC 62

Query: 67  DRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQSYPL 126
            R TEAIDWLLQNAK AIDALSRPL+TED + RKQ FS P     VP SSSSSQ QSYPL
Sbjct: 63  GRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLP-----VPSSSSSSQFQSYPL 122

Query: 127 ENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           +NFSQKGNLSVF PMILN T   FSG QP CPSQSNVG GF  FP+WE
Sbjct: 123 QNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE 165

[Close]

BLAST of Lsi02G007910 vs. ExPASy TrEMBL
Match: A0A6J1KM30 (transcription factor PCF8-like OS=Cucurbita maxima OX=3661 GN=LOC111495803 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.0e-53
Identity = 115/151 (76.16%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 22  DRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSA 81
           +RRLRSSAG+GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG +R TEAIDWLLQNAKSA
Sbjct: 3   ERRLRSSAGSGKVYTSKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSA 62

Query: 82  IDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQSYPLENFSQKGNLSVFGPMIL 141
           IDALSRPLETEDG+      SFPSMA+SVP SSSSSQ  +YPLENF + GNLSV  PMI+
Sbjct: 63  IDALSRPLETEDGKR-----SFPSMASSVPSSSSSSQFLAYPLENFFRNGNLSVLSPMIM 122

Query: 142 NATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           N TP EFSG+QP C SQSN  +G  SFP+WE
Sbjct: 123 NVTPAEFSGMQPPCLSQSNATSGLPSFPMWE 148

[Close]

BLAST of Lsi02G007910 vs. ExPASy TrEMBL
Match: D6MK40 (Transcription factor (Fragment) OS=Lycoris longituba OX=272140 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.6e-15
Identity = 60/138 (43.48%), Postives = 81/138 (58.70%), Query Frame = 0


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KGLR RR+RLSA TAI+FYDVQDRLGCDR ++A+DWL++NA
Sbjct: 13  GRKDRH-------SKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGCDRPSKAVDWLIKNA 72

Query: 79  KSAIDALS-----RPLETEDGESRKQSFSFP--SMAASVPSSSSSQLQSYPLENFSQKGN 138
           K+AID L       P  + D + ++ S   P  +  A+ P +SSS          S   +
Sbjct: 73  KAAIDQLDELPPWEPNSSADFQEKQTSVHEPISTSTATFPINSSSYPPDLLSRTSSHAQD 132

Query: 139 LSVFGPMILNATPEEFSG 150
           L +     L+ TP+ FSG
Sbjct: 133 LRLSLQSFLDTTPDIFSG 143

[Close]

BLAST of Lsi02G007910 vs. NCBI nr
Match: XP_038893685.1 (transcription factor TCP10-like [Benincasa hispida])

HSP 1 Score: 268.9 bits (686), Expect = 3.1e-68
Identity = 144/173 (83.24%), Postives = 150/173 (86.71%), Query Frame = 0


Query: 1   MGSQRFSLNDEDKKTAKLGRRDRRLRSSAGA--GKVYTSKGLRARRLRLSAPTAIEFYDV 60
           MGSQR SLNDED+KTAKLGRRDRRLRSSAGA  GKVYTS+GLRARR RLSAPTAIEFYDV
Sbjct: 1   MGSQRLSLNDEDEKTAKLGRRDRRLRSSAGAVPGKVYTSRGLRARRFRLSAPTAIEFYDV 60

Query: 61  QDRLGCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVPSSSSSQL 120
           QDRLG DR TE +DWLL+NAKSAIDALSRPLET D E RKQ F  P     VPSSSSSQ 
Sbjct: 61  QDRLGLDRPTETMDWLLENAKSAIDALSRPLETVDRELRKQIFISP-----VPSSSSSQF 120

Query: 121 QSYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           QSYPLENFSQKGNL+VF PMILNATPEEFSG+QP  PSQSNV TGFLSFPIWE
Sbjct: 121 QSYPLENFSQKGNLAVFSPMILNATPEEFSGIQPPVPSQSNVETGFLSFPIWE 168

[Close]

BLAST of Lsi02G007910 vs. NCBI nr
Match: XP_011653401.1 (transcription factor PCF8 [Cucumis sativus] >XP_031738333.1 transcription factor PCF8 [Cucumis sativus] >XP_031738336.1 transcription factor PCF8 [Cucumis sativus] >KGN64714.1 hypothetical protein Csa_013631 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-59
Identity = 128/172 (74.42%), Postives = 141/172 (81.98%), Query Frame = 0


Query: 7   SLNDEDKKTAKLGRRDRRLRSS----AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRL 66
           SL+D DK T K+ RR+RRL S+    AG GKVYTSKGLRARRLRLSAPTAI+FYD+QDRL
Sbjct: 3   SLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRL 62

Query: 67  GCDRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFP---SMAASVPSSSSSQLQ 126
           GC R TEAIDWLL NAKSAIDALSRPL+TED + RKQSFS P   S ++S  SSSSSQ Q
Sbjct: 63  GCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQ 122

Query: 127 SYPLENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           SYPL+NFSQKGNLSVF PMILNAT  EFSG QP CPSQSN+G GF  FP+WE
Sbjct: 123 SYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 174

[Close]

BLAST of Lsi02G007910 vs. NCBI nr
Match: XP_008443015.1 (PREDICTED: transcription factor TCP10-like [Cucumis melo] >KAA0057025.1 transcription factor TCP10-like [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-59
Identity = 130/168 (77.38%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 7   SLNDEDKKTAKLGRRDRRLRSS--AGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGC 66
           SL+D DKK AK+GRR+RRL SS  AGAGKVYTSKGLRARRLRLSAPTAI+FYD+QDRLGC
Sbjct: 3   SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGC 62

Query: 67  DRSTEAIDWLLQNAKSAIDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQSYPL 126
            R TEAIDWLLQNAK AIDALSRPL+TED + RKQ FS P     VP SSSSSQ QSYPL
Sbjct: 63  GRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLP-----VPSSSSSSQFQSYPL 122

Query: 127 ENFSQKGNLSVFGPMILNATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           +NFSQKGNLSVF PMILN T   FSG QP CPSQSNVG GF  FP+WE
Sbjct: 123 QNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE 165

[Close]

BLAST of Lsi02G007910 vs. NCBI nr
Match: XP_023001760.1 (transcription factor PCF8-like [Cucurbita maxima])

HSP 1 Score: 218.0 bits (554), Expect = 6.3e-53
Identity = 115/151 (76.16%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 22  DRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSA 81
           +RRLRSSAG+GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG +R TEAIDWLLQNAKSA
Sbjct: 3   ERRLRSSAGSGKVYTSKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSA 62

Query: 82  IDALSRPLETEDGESRKQSFSFPSMAASVP-SSSSSQLQSYPLENFSQKGNLSVFGPMIL 141
           IDALSRPLETEDG+      SFPSMA+SVP SSSSSQ  +YPLENF + GNLSV  PMI+
Sbjct: 63  IDALSRPLETEDGKR-----SFPSMASSVPSSSSSSQFLAYPLENFFRNGNLSVLSPMIM 122

Query: 142 NATPEEFSGVQPTCPSQSNVGTGFLSFPIWE 172
           N TP EFSG+QP C SQSN  +G  SFP+WE
Sbjct: 123 NVTPAEFSGMQPPCLSQSNATSGLPSFPMWE 148

[Close]

BLAST of Lsi02G007910 vs. NCBI nr
Match: KAG6583970.1 (Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 8.5e-26
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 22  DRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNAKSA 81
           +RRLRSSAG+GKVYTSKG RAR+LRLSAPTAI+FYD+QDRLG +R TEAIDWLLQNAKSA
Sbjct: 3   ERRLRSSAGSGKVYTSKGFRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAKSA 62

Query: 82  IDALSRPLETEDGESRKQSF 102
           ID LSRPLETEDG+ +   F
Sbjct: 63  IDVLSRPLETEDGKRQPLCF 82

[Close]

BLAST of Lsi02G007910 vs. TAIR 10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 )

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KG R RR+RLSAPTAI+FYDVQDRLG DR ++A+DWL+  A
Sbjct: 48  GRKDRH-------SKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKA 107

Query: 79  KSAIDALSR 88
           KSAID L++
Sbjct: 108 KSAIDDLAQ 109

[Close]

BLAST of Lsi02G007910 vs. TAIR 10
Match: AT2G31070.1 (TCP domain protein 10 )

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-15
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 19 GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
          GR+DR         KV+TSKG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ A
Sbjct: 28 GRKDRH-------SKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 87

Query: 79 KSAIDAL 86
          K+AID L
Sbjct: 88 KTAIDKL 87

[Close]

BLAST of Lsi02G007910 vs. TAIR 10
Match: AT3G15030.1 (TCP family transcription factor 4 )

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-14
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ A
Sbjct: 44  GRKDRH-------SKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKA 103

Query: 79  KSAIDALS 87
           K++ID L+
Sbjct: 104 KTSIDELA 104

[Close]

BLAST of Lsi02G007910 vs. TAIR 10
Match: AT3G15030.2 (TCP family transcription factor 4 )

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-14
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ A
Sbjct: 44  GRKDRH-------SKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKA 103

Query: 79  KSAIDALS 87
           K++ID L+
Sbjct: 104 KTSIDELA 104

[Close]

BLAST of Lsi02G007910 vs. TAIR 10
Match: AT3G15030.3 (TCP family transcription factor 4 )

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-14
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 19  GRRDRRLRSSAGAGKVYTSKGLRARRLRLSAPTAIEFYDVQDRLGCDRSTEAIDWLLQNA 78
           GR+DR         KV T+KG R RR+RLSA TAI+FYDVQDRLG DR ++A+DWL++ A
Sbjct: 44  GRKDRH-------SKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKA 103

Query: 79  KSAIDALS 87
           K++ID L+
Sbjct: 104 KTSIDELA 104

The following BLAST results are available for this feature:

BLAST of Lsi02G007910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MAH8	3.5e-14	60.87	Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1	[more]
O82277	7.8e-14	61.19	Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1	[more]
A2ZMR9	1.7e-13	44.25	Transcription factor PCF8 OS=Oryza sativa subsp. indica OX=39946 GN=PCF8 PE=4 SV...	[more]
Q2QM59	2.3e-13	44.95	Transcription factor PCF8 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF8 PE=2 ...	[more]
A2WM14	3.9e-13	59.70	Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV...	[more]

BLAST of Lsi02G007910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUP1	5.7e-60	74.42	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G077150 PE=4 SV...	[more]
A0A5A7UTZ9	7.5e-60	77.38	Transcription factor TCP10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3B7T4	7.5e-60	77.38	transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=...	[more]
A0A6J1KM30	3.0e-53	76.16	transcription factor PCF8-like OS=Cucurbita maxima OX=3661 GN=LOC111495803 PE=4 ...	[more]
D6MK40	5.6e-15	43.48	Transcription factor (Fragment) OS=Lycoris longituba OX=272140 PE=2 SV=1	[more]

BLAST of Lsi02G007910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893685.1	3.1e-68	83.24	transcription factor TCP10-like [Benincasa hispida]	[more]
XP_011653401.1	1.2e-59	74.42	transcription factor PCF8 [Cucumis sativus] >XP_031738333.1 transcription factor...	[more]
XP_008443015.1	1.5e-59	77.38	PREDICTED: transcription factor TCP10-like [Cucumis melo] >KAA0057025.1 transcri...	[more]
XP_023001760.1	6.3e-53	76.16	transcription factor PCF8-like [Cucurbita maxima]	[more]
KAG6583970.1	8.5e-26	80.00	Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi02G007910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53230.1	2.5e-15	60.87	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT2G31070.1	5.5e-15	61.19	TCP domain protein 10	[more]
AT3G15030.1	8.0e-14	57.35	TCP family transcription factor 4	[more]
AT3G15030.2	8.0e-14	57.35	TCP family transcription factor 4	[more]
AT3G15030.3	8.0e-14	57.35	TCP family transcription factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 33..117 e-value: 1.3E-21 score: 77.8
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 20..85 score: 22.742882
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..28
None	No IPR available	PANTHER	PTHR31072:SF136	TRANSCRIPTION FACTOR TCP10	coord: 19..118
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 19..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G007910.1	Lsi02G007910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000032	regulation of secondary shoot formation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding