Lsi02G007470 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G007470
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	E3 ubiquitin-protein ligase RMA1H1-like
Location	chr02: 6854087 .. 6854809 (-)
RNA-Seq Expression	Lsi02G007470
Synteny	Lsi02G007470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTTGAGCACTACTTTTCCCATAGATGGAGGAGGCAGGTTCCAGCTGCAATGAGAAACTCTGAGAAGATTAAGCCTTGCTTTGACTGCAACATTTGCTTAGACTTTGCATCTGAGCCTATAGTTACCCTCTGTGGCCACCTCTATTGCTGGCCTTGCATTTACAAGTGGCTTCATGTCCAGAGTGCCTCCCTCGCCCCCGATGAGCCTCCGCAATGTCCAGTTTGCAAGGCCGATATTTCCCACACGACAATGGTCCCTCTCTATGGCCGTGGCCAATCGGCTGAAGATGCTGAGGTTGATGCCAGAGGGCTGCTCATACCTCCTAGACCATCAGCCTTCGGCAACAAGGCTCTGGCAACTATCAGATCTAATAATGCTTCTGGCCAGCAGTTTGCTTATGGAGACCTATATCAAAACCAAAACTACAATTTTGATATGTATGACAGTTATGAAGAGGACTCCAGCAGCTCGTTGTTTAACCTTGAAGACAACCCGGCTGGTAGTTTTCGTCATCCTACGGCCGGGATGTTTGCGGGGACAGTGTATGCTAGGTTCTTTAGGAATTCAGAGAACATGTACGCACACCCAAATTCTTATGGTCTAAGTGGGAGTAGCAGTACTCGGTTGAGAAGGCAGGAAATACTGGCCGAGAAGTCGCTTAATAGGATATCAATTTTTCTCTTCTGTTGCTTCGTTTTGTGCCTTGCTGTATTCTAG

mRNA sequence

ATGGCCTTTGAGCACTACTTTTCCCATAGATGGAGGAGGCAGGTTCCAGCTGCAATGAGAAACTCTGAGAAGATTAAGCCTTGCTTTGACTGCAACATTTGCTTAGACTTTGCATCTGAGCCTATAGTTACCCTCTGTGGCCACCTCTATTGCTGGCCTTGCATTTACAAGTGGCTTCATGTCCAGAGTGCCTCCCTCGCCCCCGATGAGCCTCCGCAATGTCCAGTTTGCAAGGCCGATATTTCCCACACGACAATGGTCCCTCTCTATGGCCGTGGCCAATCGGCTGAAGATGCTGAGGTTGATGCCAGAGGGCTGCTCATACCTCCTAGACCATCAGCCTTCGGCAACAAGGCTCTGGCAACTATCAGATCTAATAATGCTTCTGGCCAGCAGTTTGCTTATGGAGACCTATATCAAAACCAAAACTACAATTTTGATATGTATGACAGTTATGAAGAGGACTCCAGCAGCTCGTTGTTTAACCTTGAAGACAACCCGGCTGGTAGTTTTCGTCATCCTACGGCCGGGATGTTTGCGGGGACAGTGTATGCTAGGTTCTTTAGGAATTCAGAGAACATGTACGCACACCCAAATTCTTATGGTCTAAGTGGGAGTAGCAGTACTCGGTTGAGAAGGCAGGAAATACTGGCCGAGAAGTCGCTTAATAGGATATCAATTTTTCTCTTCTGTTGCTTCGTTTTGTGCCTTGCTGTATTCTAG

Coding sequence (CDS)

ATGGCCTTTGAGCACTACTTTTCCCATAGATGGAGGAGGCAGGTTCCAGCTGCAATGAGAAACTCTGAGAAGATTAAGCCTTGCTTTGACTGCAACATTTGCTTAGACTTTGCATCTGAGCCTATAGTTACCCTCTGTGGCCACCTCTATTGCTGGCCTTGCATTTACAAGTGGCTTCATGTCCAGAGTGCCTCCCTCGCCCCCGATGAGCCTCCGCAATGTCCAGTTTGCAAGGCCGATATTTCCCACACGACAATGGTCCCTCTCTATGGCCGTGGCCAATCGGCTGAAGATGCTGAGGTTGATGCCAGAGGGCTGCTCATACCTCCTAGACCATCAGCCTTCGGCAACAAGGCTCTGGCAACTATCAGATCTAATAATGCTTCTGGCCAGCAGTTTGCTTATGGAGACCTATATCAAAACCAAAACTACAATTTTGATATGTATGACAGTTATGAAGAGGACTCCAGCAGCTCGTTGTTTAACCTTGAAGACAACCCGGCTGGTAGTTTTCGTCATCCTACGGCCGGGATGTTTGCGGGGACAGTGTATGCTAGGTTCTTTAGGAATTCAGAGAACATGTACGCACACCCAAATTCTTATGGTCTAAGTGGGAGTAGCAGTACTCGGTTGAGAAGGCAGGAAATACTGGCCGAGAAGTCGCTTAATAGGATATCAATTTTTCTCTTCTGTTGCTTCGTTTTGTGCCTTGCTGTATTCTAG

Protein sequence

MAFEHYFSHRWRRQVPAAMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKALATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFAGTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF

Homology

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BLAST of Lsi02G007470 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.3e-42
Identity = 107/227 (47.14%), Postives = 131/227 (57.71%), Query Frame = 0


Query: 23  EKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASL--APDEPPQCPVCKAD 82
           E I   FDCNICLD   EP++TLCGHLYCWPCIYKW++ QS S   +  + PQCPVCKA+
Sbjct: 33  ENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAE 92

Query: 83  ISHTTMVPLYGR-GQSAEDAEVDARGLLI-----PPRPSAFGNKALATIRSNNASGQQFA 142
           +S  T++PLYGR GQS + +E  A  L I     PP P   G+  L T  SN +   Q  
Sbjct: 93  VSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQ-R 152

Query: 143 YGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFAGTVYARFFRNSE-N 202
            G   Q+Q        SY    SS + +     A   +H   G  A   YAR F NS   
Sbjct: 153 RGYQQQSQTRQPAYQGSY---MSSPMLSPGGATANMLQHSMIGEVA---YARIFGNSSTT 212

Query: 203 MYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 241
           MY +PNSY L+ SSS R+RRQ   A++SL RI  FLFCCFV CL +F
Sbjct: 213 MYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

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BLAST of Lsi02G007470 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-36
Identity = 93/221 (42.08%), Postives = 124/221 (56.11%), Query Frame = 0


Query: 28  CFDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLAPDE-PPQCPVCKADISHTTM 87
           CFDCNICLD A +P+VTLCGHL+CWPCIYKWLHVQ +S++ D+    CPVCK++I+ T++
Sbjct: 41  CFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSL 100

Query: 88  VPLYGRGQSAEDA-----EVDARGLLIP--PRPSAFGNKALATIRSNNASGQQFAYGDLY 147
           VPLYGRG S+  +     + DA    IP  P PSA  N  + +  S N S Q       +
Sbjct: 101 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRN-PITSASSLNPSLQHQTLSPSF 160

Query: 148 QNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFAGTVYARFFRNSENMYAHPN 207
            N  Y+   + + E    ++   +      SF +P  GMF   VY R F    N  A P 
Sbjct: 161 HNHQYSPRGFTTTESTDLANAVMM------SFLYPVIGMFGDLVYTRIFGTFTNTIAQP- 220

Query: 208 SYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 241
                   S R+ ++    EKSLNR+SIF  CC +LCL +F
Sbjct: 221 ------YQSQRMMQR----EKSLNRVSIFFLCCIILCLLLF 243

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BLAST of Lsi02G007470 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-32
Identity = 84/216 (38.89%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLAPD--EPPQCPVCKADISHTTM 88
           FDCNICLD   EP+VTLCGHL+CWPCI+KWL VQS S + +     QCPVCK+ +SH+T+
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 89  VPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKALATIRSNNASGQQFAYGDLYQNQNYNF 148
           VPLYGRG+     E       +P RP       +  +         +A  DL  +Q  +F
Sbjct: 106 VPLYGRGRCTTQEEGKNS---VPKRP-------VGPVYRLEMPNSPYASTDLRLSQRVHF 165

Query: 149 DM-YDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFAGTVYARFF-RNSENMYAHPNSYGLS 208
           +   + Y     S + +       +   P   M    V  R F     + +A+P++Y L+
Sbjct: 166 NSPQEGYY--PVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLA 225

Query: 209 GSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 241
           G+S  R+RR+ + A+KSL RI  F  CC VLCL +F
Sbjct: 226 GTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

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BLAST of Lsi02G007470 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.9e-27
Identity = 77/220 (35.00%), Postives = 109/220 (49.55%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLA-------PDEPPQCPVCKADI 88
           FDCNICLD   +P+VTLCGHL+CWPCI+KW +  + S           EPP+CPVCK+D+
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 89  SHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKALATIRSNNASGQQFAYGDLYQN 148
           S  T+VP+YGRGQ A  +     G  +P RP+         +      GQ+   G   ++
Sbjct: 79  SEATLVPIYGRGQKAPQS-----GSNVPSRPT-------GPVYDLRGVGQRLGEG---ES 138

Query: 149 QNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFAGTVYARFF-RNSENMYAHPNS 208
           Q Y + M D                       P  G+    VY R F  +S NM  + + 
Sbjct: 139 QRYMYRMPD-----------------------PVMGVVCEMVYRRLFGESSSNMAPYRD- 193

Query: 209 YGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 241
                  + R RR+ + AE+SL+R+ +FL C   +CL +F
Sbjct: 199 ------MNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

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BLAST of Lsi02G007470 vs. ExPASy Swiss-Prot
Match: Q99942 (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.3e-18
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLAPDEPPQCPVCKADISHTTMVP 88
           F+CNICL+ A E +V++CGHLYCWPC+++WL  +       E  +CPVCKA IS   +VP
Sbjct: 25  FECNICLETAREAVVSVCGHLYCWPCLHQWLETR------PERQECPVCKAGISREKVVP 84

Query: 89  LYGRG-QSAEDAEVDARGLLIPPRP 113
           LYGRG Q  +D       L  PPRP
Sbjct: 85  LYGRGSQKPQDPR-----LKTPPRP 98

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BLAST of Lsi02G007470 vs. ExPASy TrEMBL
Match: A0A1S3B6D8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103486320 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 3.1e-120
Identity = 208/240 (86.67%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPAAMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHYFSH WR+Q+PA+M NSEK KPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFSHGWRKQIPASMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL 120
           VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAE AE DARG LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEHAEDDARGTLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFA 180
           ATIRSNNAS QQFAYGDL QNQNYNFD+YDSYEEDS SSLF+LEDNP GS  HPTAG+  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGLLG 180

Query: 181 GTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 240
           GTVY R + +SEN+Y HPNSYGLSGS+S RLRRQEI+AEKSLNRIS FLFCCF+LCLAVF
Sbjct: 181 GTVYGRLYGDSENVYRHPNSYGLSGSNSPRLRRQEIVAEKSLNRISFFLFCCFILCLAVF 240

[Close]

BLAST of Lsi02G007470 vs. ExPASy TrEMBL
Match: A0A5A7UTV8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00770 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 3.1e-120
Identity = 208/240 (86.67%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPAAMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHYFSH WR+Q+PA+M NSEK KPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFSHGWRKQIPASMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL 120
           VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAE AE DARG LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEHAEDDARGTLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFA 180
           ATIRSNNAS QQFAYGDL QNQNYNFD+YDSYEEDS SSLF+LEDNP GS  HPTAG+  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGLLG 180

Query: 181 GTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 240
           GTVY R + +SEN+Y HPNSYGLSGS+S RLRRQEI+AEKSLNRIS FLFCCF+LCLAVF
Sbjct: 181 GTVYGRLYGDSENVYRHPNSYGLSGSNSPRLRRQEIVAEKSLNRISFFLFCCFILCLAVF 240

[Close]

BLAST of Lsi02G007470 vs. ExPASy TrEMBL
Match: A0A0A0LUK5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073810 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.6e-119
Identity = 205/240 (85.42%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPAAMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           M FEHYFSH WR+Q+PA+M NSEK KPCFDCNICLDFAS+PIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MGFEHYFSHGWRKQIPASMENSEKFKPCFDCNICLDFASDPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL 120
           VQSASLAPDEPPQCPVCKA+ISHTTMVPLYGRGQSAE AEVDARG+LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKANISHTTMVPLYGRGQSAEHAEVDARGMLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFA 180
           ATIRSNNAS QQFAYGDL QNQNYNFD+YDSYEEDS SSLF+LEDNP GS  HPTAGM  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGMLG 180

Query: 181 GTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 240
            TVY RF+ +SEN+Y HPNSYGLSGS+S RLRRQEI+AEKSLN+I  FLFCCF+LCLAVF
Sbjct: 181 ETVYGRFYWDSENIYRHPNSYGLSGSNSPRLRRQEIVAEKSLNKIYFFLFCCFLLCLAVF 240

[Close]

BLAST of Lsi02G007470 vs. ExPASy TrEMBL
Match: A0A6J1EJS4 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC111433961 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.3e-110
Identity = 198/241 (82.16%), Postives = 211/241 (87.55%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPA-AMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEHYFS RWRR VPA +M NSEK K CFDCNICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 1   MAFEHYFSRRWRRCVPASSMENSEKFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 60

Query: 61  HVQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKA 120
           H+QSASL PDEPPQCPVCKADISHTTMVPLYGR QSA++AEVD RGLLIPPRPSAFGNK 
Sbjct: 61  HIQSASLLPDEPPQCPVCKADISHTTMVPLYGRDQSAKEAEVDPRGLLIPPRPSAFGNKV 120

Query: 121 LATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMF 180
           LA+I SNNASG+Q  YGDLYQNQN NFDMYDSYEEDSSSSLFN+EDNP GSF HPTA MF
Sbjct: 121 LASIGSNNASGEQLVYGDLYQNQNDNFDMYDSYEEDSSSSLFNMEDNPVGSFGHPTARMF 180

Query: 181 AGTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAV 240
             TVY R F +SEN+YAHPNSY L+GS S +LR Q    EKSLNRISIFLFCCFVLCLA+
Sbjct: 181 GETVYGRLFGSSENLYAHPNSYALTGSGSPQLRMQ----EKSLNRISIFLFCCFVLCLAI 237

[Close]

BLAST of Lsi02G007470 vs. ExPASy TrEMBL
Match: A0A6J1KJG8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111495790 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 7.9e-108
Identity = 196/241 (81.33%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPA-AMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEHYFS RWRR VPA +M NSE+ K CFDCNICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 1   MAFEHYFSRRWRRCVPASSMENSEQFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 60

Query: 61  HVQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKA 120
           HVQS SL PDEPPQCPVCKADISHTTMVPLYGRGQSA++AEVD RGLLIPPRPSAFGNK 
Sbjct: 61  HVQSDSLLPDEPPQCPVCKADISHTTMVPLYGRGQSAKEAEVDPRGLLIPPRPSAFGNKV 120

Query: 121 LATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMF 180
           LA+I SNNASG+Q  Y DLYQ QN NFDMYDSYEEDSSSSLFNLEDNP GSF HPTA MF
Sbjct: 121 LASIGSNNASGEQLVYRDLYQYQNDNFDMYDSYEEDSSSSLFNLEDNPVGSFGHPTARMF 180

Query: 181 AGTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAV 240
             TVYAR F +SE+++AHPNSY L+GS S +LR Q    EKSLNRISIFLFCCFVLCLA+
Sbjct: 181 GETVYARLFGSSESLHAHPNSYALTGSGSPQLRIQ----EKSLNRISIFLFCCFVLCLAI 237

[Close]

BLAST of Lsi02G007470 vs. NCBI nr
Match: XP_038895713.1 (E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida])

HSP 1 Score: 451.4 bits (1160), Expect = 4.7e-123
Identity = 217/240 (90.42%), Postives = 222/240 (92.50%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPAAMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHYF H WRRQVPAAM NSEK KPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFPHGWRRQVPAAMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL 120
           VQSASL PDEPPQCPVCKA+ISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL
Sbjct: 61  VQSASLTPDEPPQCPVCKANISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFA 180
           ATIRSN ASGQQFAYGDLYQNQ YNFDMYDSYEEDSSSSLFNLED+  GS  HPTAGMF 
Sbjct: 121 ATIRSNTASGQQFAYGDLYQNQIYNFDMYDSYEEDSSSSLFNLEDSSVGSLHHPTAGMFT 180

Query: 181 GTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 240
            TVYARFF NSEN+Y HP+SYG SG+SS RLRRQEILAEKSLNRISIFLFCCFVLCL VF
Sbjct: 181 ETVYARFFGNSENVYTHPSSYGPSGNSSPRLRRQEILAEKSLNRISIFLFCCFVLCLVVF 240

[Close]

BLAST of Lsi02G007470 vs. NCBI nr
Match: XP_008442466.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >XP_008442474.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >XP_008442488.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >KAA0056985.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo var. makuwa] >TYK26413.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 441.0 bits (1133), Expect = 6.4e-120
Identity = 208/240 (86.67%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPAAMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHYFSH WR+Q+PA+M NSEK KPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFSHGWRKQIPASMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL 120
           VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAE AE DARG LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEHAEDDARGTLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFA 180
           ATIRSNNAS QQFAYGDL QNQNYNFD+YDSYEEDS SSLF+LEDNP GS  HPTAG+  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGLLG 180

Query: 181 GTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 240
           GTVY R + +SEN+Y HPNSYGLSGS+S RLRRQEI+AEKSLNRIS FLFCCF+LCLAVF
Sbjct: 181 GTVYGRLYGDSENVYRHPNSYGLSGSNSPRLRRQEIVAEKSLNRISFFLFCCFILCLAVF 240

[Close]

BLAST of Lsi02G007470 vs. NCBI nr
Match: XP_011653163.1 (E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN64674.1 hypothetical protein Csa_013288 [Cucumis sativus])

HSP 1 Score: 436.4 bits (1121), Expect = 1.6e-118
Identity = 205/240 (85.42%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPAAMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           M FEHYFSH WR+Q+PA+M NSEK KPCFDCNICLDFAS+PIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MGFEHYFSHGWRKQIPASMENSEKFKPCFDCNICLDFASDPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL 120
           VQSASLAPDEPPQCPVCKA+ISHTTMVPLYGRGQSAE AEVDARG+LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKANISHTTMVPLYGRGQSAEHAEVDARGMLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFA 180
           ATIRSNNAS QQFAYGDL QNQNYNFD+YDSYEEDS SSLF+LEDNP GS  HPTAGM  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGMLG 180

Query: 181 GTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 240
            TVY RF+ +SEN+Y HPNSYGLSGS+S RLRRQEI+AEKSLN+I  FLFCCF+LCLAVF
Sbjct: 181 ETVYGRFYWDSENIYRHPNSYGLSGSNSPRLRRQEIVAEKSLNKIYFFLFCCFLLCLAVF 240

[Close]

BLAST of Lsi02G007470 vs. NCBI nr
Match: XP_023519102.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023519103.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023519104.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412.1 bits (1058), Expect = 3.2e-111
Identity = 200/241 (82.99%), Postives = 212/241 (87.97%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPA-AMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEHYFS RWRR VPA +M NSEK K CFDCNICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 1   MAFEHYFSRRWRRCVPASSMENSEKFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 60

Query: 61  HVQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKA 120
           HVQSASL PDEPPQCPVCKADISHTTMVPLYGRGQSA++AEVD RGLLIPPRPSAFGNK 
Sbjct: 61  HVQSASLLPDEPPQCPVCKADISHTTMVPLYGRGQSAKEAEVDPRGLLIPPRPSAFGNKV 120

Query: 121 LATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMF 180
           LA+I SNNASG+Q  YGDLYQNQN NFDMYDSYEEDSSSSLFN+EDNP GSF HPTA MF
Sbjct: 121 LASIGSNNASGEQLVYGDLYQNQNDNFDMYDSYEEDSSSSLFNMEDNPVGSFGHPTARMF 180

Query: 181 AGTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAV 240
             TVY R F +SEN+YAHPNSY L+GS S +LR Q    EKSLNRISIFLFCCFVLCLA+
Sbjct: 181 GETVYGRLFGSSENLYAHPNSYALTGSGSPQLRMQ----EKSLNRISIFLFCCFVLCLAI 237

[Close]

BLAST of Lsi02G007470 vs. NCBI nr
Match: KAG7019622.1 (E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 409.8 bits (1052), Expect = 1.6e-110
Identity = 199/241 (82.57%), Postives = 211/241 (87.55%), Query Frame = 0


Query: 1   MAFEHYFSHRWRRQVPA-AMRNSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEHYFS RWRR VPA +M NSEK K CFDCNICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 102 MAFEHYFSRRWRRCVPASSMENSEKFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 161

Query: 61  HVQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKA 120
           HVQSASL PDEPPQCPVCKADISHTTMVPLYGRGQSA++AEVD RGLLIPPRPSA GNK 
Sbjct: 162 HVQSASLLPDEPPQCPVCKADISHTTMVPLYGRGQSAKEAEVDPRGLLIPPRPSALGNKV 221

Query: 121 LATIRSNNASGQQFAYGDLYQNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMF 180
           LA+I SNNASG+Q  YGDLYQNQN NFDMYDSYEEDSSSSLFN+EDNP GSF HPTA MF
Sbjct: 222 LASIGSNNASGEQLVYGDLYQNQNDNFDMYDSYEEDSSSSLFNMEDNPVGSFGHPTARMF 281

Query: 181 AGTVYARFFRNSENMYAHPNSYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAV 240
             TVY R F +SEN+YAHPNSY L+GS S +LR Q    EKSLNRISIFLFCCFVLCLA+
Sbjct: 282 GETVYGRLFGSSENLYAHPNSYALTGSGSPQLRMQ----EKSLNRISIFLFCCFVLCLAI 338

[Close]

BLAST of Lsi02G007470 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-37
Identity = 93/221 (42.08%), Postives = 124/221 (56.11%), Query Frame = 0


Query: 28  CFDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLAPDE-PPQCPVCKADISHTTM 87
           CFDCNICLD A +P+VTLCGHL+CWPCIYKWLHVQ +S++ D+    CPVCK++I+ T++
Sbjct: 41  CFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSL 100

Query: 88  VPLYGRGQSAEDA-----EVDARGLLIP--PRPSAFGNKALATIRSNNASGQQFAYGDLY 147
           VPLYGRG S+  +     + DA    IP  P PSA  N  + +  S N S Q       +
Sbjct: 101 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRN-PITSASSLNPSLQHQTLSPSF 160

Query: 148 QNQNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFAGTVYARFFRNSENMYAHPN 207
            N  Y+   + + E    ++   +      SF +P  GMF   VY R F    N  A P 
Sbjct: 161 HNHQYSPRGFTTTESTDLANAVMM------SFLYPVIGMFGDLVYTRIFGTFTNTIAQP- 220

Query: 208 SYGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 241
                   S R+ ++    EKSLNR+SIF  CC +LCL +F
Sbjct: 221 ------YQSQRMMQR----EKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Lsi02G007470 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-33
Identity = 84/216 (38.89%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLAPD--EPPQCPVCKADISHTTM 88
           FDCNICLD   EP+VTLCGHL+CWPCI+KWL VQS S + +     QCPVCK+ +SH+T+
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 89  VPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKALATIRSNNASGQQFAYGDLYQNQNYNF 148
           VPLYGRG+     E       +P RP       +  +         +A  DL  +Q  +F
Sbjct: 106 VPLYGRGRCTTQEEGKNS---VPKRP-------VGPVYRLEMPNSPYASTDLRLSQRVHF 165

Query: 149 DM-YDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFAGTVYARFF-RNSENMYAHPNSYGLS 208
           +   + Y     S + +       +   P   M    V  R F     + +A+P++Y L+
Sbjct: 166 NSPQEGYY--PVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLA 225

Query: 209 GSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 241
           G+S  R+RR+ + A+KSL RI  F  CC VLCL +F
Sbjct: 226 GTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Lsi02G007470 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-33
Identity = 84/216 (38.89%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLAPD--EPPQCPVCKADISHTTM 88
           FDCNICLD   EP+VTLCGHL+CWPCI+KWL VQS S + +     QCPVCK+ +SH+T+
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 89  VPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKALATIRSNNASGQQFAYGDLYQNQNYNF 148
           VPLYGRG+     E       +P RP       +  +         +A  DL  +Q  +F
Sbjct: 106 VPLYGRGRCTTQEEGKNS---VPKRP-------VGPVYRLEMPNSPYASTDLRLSQRVHF 165

Query: 149 DM-YDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFAGTVYARFF-RNSENMYAHPNSYGLS 208
           +   + Y     S + +       +   P   M    V  R F     + +A+P++Y L+
Sbjct: 166 NSPQEGYY--PVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLA 225

Query: 209 GSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 241
           G+S  R+RR+ + A+KSL RI  F  CC VLCL +F
Sbjct: 226 GTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Lsi02G007470 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-28
Identity = 77/220 (35.00%), Postives = 109/220 (49.55%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLA-------PDEPPQCPVCKADI 88
           FDCNICLD   +P+VTLCGHL+CWPCI+KW +  + S           EPP+CPVCK+D+
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 89  SHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKALATIRSNNASGQQFAYGDLYQN 148
           S  T+VP+YGRGQ A  +     G  +P RP+         +      GQ+   G   ++
Sbjct: 79  SEATLVPIYGRGQKAPQS-----GSNVPSRPT-------GPVYDLRGVGQRLGEG---ES 138

Query: 149 QNYNFDMYDSYEEDSSSSLFNLEDNPAGSFRHPTAGMFAGTVYARFF-RNSENMYAHPNS 208
           Q Y + M D                       P  G+    VY R F  +S NM  + + 
Sbjct: 139 QRYMYRMPD-----------------------PVMGVVCEMVYRRLFGESSSNMAPYRD- 193

Query: 209 YGLSGSSSTRLRRQEILAEKSLNRISIFLFCCFVLCLAVF 241
                  + R RR+ + AE+SL+R+ +FL C   +CL +F
Sbjct: 199 ------MNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Lsi02G007470 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-24
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLAPDEPPQCPVCKADISHTTMVP 88
           F+CNICLD A +PIVTLCGHL+CWPC+YKWLH+ S S        CPVCKA I    +VP
Sbjct: 21  FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS------KDCPVCKAVIEEDRLVP 80

Query: 89  LYGRGQSAEDAEVDA-RGLLIPPRPS 114
           LYGRG+S+ D    +  GL +P RPS
Sbjct: 81  LYGRGKSSADPRSKSIPGLEVPNRPS 100

The following BLAST results are available for this feature:

BLAST of Lsi02G007470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	7.3e-42	47.14	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
Q8GUK7	1.6e-36	42.08	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
O64425	4.0e-32	38.89	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
P93030	3.9e-27	35.00	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q99942	4.3e-18	50.59	E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1	[more]

BLAST of Lsi02G007470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B6D8	3.1e-120	86.67	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103486320 ...	[more]
A0A5A7UTV8	3.1e-120	86.67	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LUK5	7.6e-119	85.42	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073810 P...	[more]
A0A6J1EJS4	1.3e-110	82.16	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KJG8	7.9e-108	81.33	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111495...	[more]

BLAST of Lsi02G007470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895713.1	4.7e-123	90.42	E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida]	[more]
XP_008442466.1	6.4e-120	86.67	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >XP_008442474....	[more]
XP_011653163.1	1.6e-118	85.42	E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN64674.1 hypothetical pr...	[more]
XP_023519102.1	3.2e-111	82.99	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_0235191...	[more]
KAG7019622.1	1.6e-110	82.57	E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of Lsi02G007470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27470.1	1.1e-37	42.08	RING membrane-anchor 3	[more]
AT4G03510.1	2.8e-33	38.89	RING membrane-anchor 1	[more]
AT4G03510.2	2.8e-33	38.89	RING membrane-anchor 1	[more]
AT4G28270.1	2.7e-28	35.00	RING membrane-anchor 2	[more]
AT1G19310.1	1.4e-24	58.14	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 31..77 e-value: 6.2E-9 score: 45.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 31..78 score: 12.356501
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 31..77 e-value: 2.4E-8 score: 33.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 9..106 e-value: 1.4E-16 score: 62.6
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 2..240
None	No IPR available	PANTHER	PTHR12313:SF6	E3 UBIQUITIN-PROTEIN LIGASE RMA3	coord: 2..240
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 29..79 e-value: 8.58212E-26 score: 93.1375
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 24..90
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 46..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G007470.1	Lsi02G007470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016020	membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity