Lsi02G006940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G006940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Calcium-binding EF-hand family protein
Location	chr02: 6200704 .. 6201057 (+)
RNA-Seq Expression	Lsi02G006940
Synteny	Lsi02G006940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCAGGAAACGATGTCGTTTTCTTCAAAGATTTCTTCCCTGAAATGGTGGAGAAACTGGGAATTAAAGGGTTTATGAAGGAATTGAGATCTGGGTTTTGTTTGCTGATGGATAAAGAAAAAGGTGTCATAACTCCAGAGAGCTTGAGAAAGAAGATGGGATTTTTGGGATTAATATTGGAAGATGATGAATTGATGTGGATGGTGAGAGAAGGAGATTTGGATGGAGATGGAGCTTTAAGTGAAGCTGAATTTTGTATTTTAATGATCAAACTTAGCCCTGGATTTATGCATTTATCTTCAACTTTGTTTCACCAATCTCATTTGGATAAAAAGTTTAGGAAGAAATAG

mRNA sequence

ATGGGATCAGGAAACGATGTCGTTTTCTTCAAAGATTTCTTCCCTGAAATGGTGGAGAAACTGGGAATTAAAGGGTTTATGAAGGAATTGAGATCTGGGTTTTGTTTGCTGATGGATAAAGAAAAAGGTGTCATAACTCCAGAGAGCTTGAGAAAGAAGATGGGATTTTTGGGATTAATATTGGAAGATGATGAATTGATGTGGATGGTGAGAGAAGGAGATTTGGATGGAGATGGAGCTTTAAGTGAAGCTGAATTTTGTATTTTAATGATCAAACTTAGCCCTGGATTTATGCATTTATCTTCAACTTTGTTTCACCAATCTCATTTGGATAAAAAGTTTAGGAAGAAATAG

Coding sequence (CDS)

ATGGGATCAGGAAACGATGTCGTTTTCTTCAAAGATTTCTTCCCTGAAATGGTGGAGAAACTGGGAATTAAAGGGTTTATGAAGGAATTGAGATCTGGGTTTTGTTTGCTGATGGATAAAGAAAAAGGTGTCATAACTCCAGAGAGCTTGAGAAAGAAGATGGGATTTTTGGGATTAATATTGGAAGATGATGAATTGATGTGGATGGTGAGAGAAGGAGATTTGGATGGAGATGGAGCTTTAAGTGAAGCTGAATTTTGTATTTTAATGATCAAACTTAGCCCTGGATTTATGCATTTATCTTCAACTTTGTTTCACCAATCTCATTTGGATAAAAAGTTTAGGAAGAAATAG

Protein sequence

MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRKK

Homology

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BLAST of Lsi02G006940 vs. ExPASy Swiss-Prot
Match: Q9LSQ6 (Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-20
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMG-FLGL-ILEDDELM 69
           F+DFFP M  KLG +G ++E+  GF LLMDK+KGVIT ESLR+     LGL  L DD++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 70  WMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS 102
           +M+ EGD D DGAL++ EFC+LM +LSP  M  S
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEAS 112

[Close]

BLAST of Lsi02G006940 vs. ExPASy Swiss-Prot
Match: Q9ZPX9 (Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMW 69
           ++D  P M EK+ ++ F+ EL  GF LL D E+ +IT ESLR+  G LG+  +  ++   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 70  MVREGDLDGDGALSEAEFCILMIKLSPGFMHLSST 104
           MVREGDLDGDGAL++ EFC+LM++LSP  M  + T
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAET 116

[Close]

BLAST of Lsi02G006940 vs. ExPASy Swiss-Prot
Match: O81831 (Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-18
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKK-MGFLGL-ILEDDELM 69
           F DF P M   LG +G + EL +GF LLMD+EKGVIT ESLR+     LGL  L D+++ 
Sbjct: 19  FHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDVR 78

Query: 70  WMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTL 105
            M++EGD D DGAL++ EFC+LM +LSP  M  S  L
Sbjct: 79  CMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCL 115

[Close]

BLAST of Lsi02G006940 vs. ExPASy Swiss-Prot
Match: Q12798 (Centrin-1 OS=Homo sapiens OX=9606 GN=CETN1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-09
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 4   GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILED 63
           G   + F DF   M +K+  K   +E+   F L  D E G I+ ++L++    LG  L D
Sbjct: 80  GTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTD 139

Query: 64  DELMWMVREGDLDGDGALSEAEFCILMIKLS 95
           +EL  M+ E D DGDG ++E EF  +M K S
Sbjct: 140 EELQEMIDEADRDGDGEVNEEEFLRIMKKTS 170

[Close]

BLAST of Lsi02G006940 vs. ExPASy Swiss-Prot
Match: P43645 (Caltractin (Fragment) OS=Spermatozopsis similis OX=3192 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 4   GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILED 63
           G+  + F++F   M  K+G +   +E+   F L  D + G IT ++L++    LG  L D
Sbjct: 56  GSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTD 115

Query: 64  DELMWMVREGDLDGDGALSEAEFCILMIKLS 95
           +E+  M+ E D DGDG ++E EF  +M K S
Sbjct: 116 EEIQEMIDEADRDGDGEINEEEFFRIMKKTS 146

[Close]

BLAST of Lsi02G006940 vs. ExPASy TrEMBL
Match: A0A5A7UNY8 (Calcium-binding protein PBP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00220 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.5e-47
Identity = 94/114 (82.46%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 3   SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILE 62
           SGN VV FKDFFP+M+EKLG+KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LE
Sbjct: 8   SGNGVVIFKDFFPDMLEKLGVKGFIKELRCGFGLLMDKEKGVITAESLRKNMRFFGLVLE 67

Query: 63  DDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRK 117
           D+E+MWMVREGDLDGDGALSEAEF ILMIKLSPGFMHLSS+ FHQSHLD+KF K
Sbjct: 68  DEEVMWMVREGDLDGDGALSEAEFFILMIKLSPGFMHLSSSFFHQSHLDRKFTK 121

[Close]

BLAST of Lsi02G006940 vs. ExPASy TrEMBL
Match: A0A0A0LV00 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G071800 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 93/114 (81.58%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 3   SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILE 62
           SG DVV FKDFFPEM+EKLG KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LE
Sbjct: 6   SGKDVVLFKDFFPEMLEKLGAKGFIKELRYGFRLLMDKEKGVITAESLRKNMRFFGLVLE 65

Query: 63  DDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRK 117
           D+E+MWMV+EGDLDGDGALSEAEF ILMIKLSPGFMHLSS+ FHQSH D+KF K
Sbjct: 66  DEEVMWMVKEGDLDGDGALSEAEFFILMIKLSPGFMHLSSSFFHQSHSDRKFTK 119

[Close]

BLAST of Lsi02G006940 vs. ExPASy TrEMBL
Match: A0A7N2LV84 (EF-hand domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.2e-28
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI 60
           MGS N VV F+DFFP MVEKLG +GFMKEL +GF LLMD+EKGVIT +SL++    LGL 
Sbjct: 1   MGSRNGVV-FEDFFPAMVEKLGAEGFMKELDNGFRLLMDEEKGVITFQSLKRNSALLGLQ 60

Query: 61  -LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQS 109
            + D+ELM M+REGDLDGDGAL+E EFC LM +LSPG M  SS L  ++
Sbjct: 61  GMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMESSSELLEEA 108

[Close]

BLAST of Lsi02G006940 vs. ExPASy TrEMBL
Match: A0A6J1JUT4 (calcium-binding protein KIC-like OS=Cucurbita maxima OX=3661 GN=LOC111489942 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.8e-28
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI 60
          MGS N VV F+DFFP MVEKLG+KGFM+ELR GF LLMDKEKGVIT ESLR KMGFLG  
Sbjct: 1  MGSRNRVVLFRDFFPAMVEKLGVKGFMEELRYGFRLLMDKEKGVITAESLRTKMGFLG-- 60

Query: 61 LEDDELMWMVREGDLDGDGALSEAEFCI 89
          LE++E M MV EGDLDGDGALSEAEF I
Sbjct: 61 LEEEEAMGMVSEGDLDGDGALSEAEFFI 86

[Close]

BLAST of Lsi02G006940 vs. ExPASy TrEMBL
Match: A0A067GJU9 (EF-hand domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033591mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGL- 60
           M S N  V F+DFFP MVEKLG +GFM+EL +GF LLMD++KG+IT ESL+K    LGL 
Sbjct: 1   MASANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQ 60

Query: 61  ILEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLF 106
            + D+ELM M+REGDLDGDGAL+E EFC LM +LSPG M  S+ LF
Sbjct: 61  DMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLF 106

[Close]

BLAST of Lsi02G006940 vs. NCBI nr
Match: KAA0056934.1 (calcium-binding protein PBP1 [Cucumis melo var. makuwa] >TYK26362.1 calcium-binding protein PBP1 [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 94/114 (82.46%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 3   SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILE 62
           SGN VV FKDFFP+M+EKLG+KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LE
Sbjct: 8   SGNGVVIFKDFFPDMLEKLGVKGFIKELRCGFGLLMDKEKGVITAESLRKNMRFFGLVLE 67

Query: 63  DDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRK 117
           D+E+MWMVREGDLDGDGALSEAEF ILMIKLSPGFMHLSS+ FHQSHLD+KF K
Sbjct: 68  DEEVMWMVREGDLDGDGALSEAEFFILMIKLSPGFMHLSSSFFHQSHLDRKFTK 121

[Close]

BLAST of Lsi02G006940 vs. NCBI nr
Match: XP_038895967.1 (calcium-binding protein PBP1-like [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 8.7e-46
Identity = 97/117 (82.91%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI 60
           MGSGN VVFFKDFFPEMVEKLGIKGFMKELRSGF L+MDKEKG+ITPESLRK MGFLGLI
Sbjct: 1   MGSGNGVVFFKDFFPEMVEKLGIKGFMKELRSGFYLMMDKEKGLITPESLRKNMGFLGLI 60

Query: 61  LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRKK 118
           LED+E+M MVREGDLDGDGAL+EAEFCILMI+LSP       TLFHQSHLDK F +K
Sbjct: 61  LEDEEVMLMVREGDLDGDGALNEAEFCILMIRLSP-------TLFHQSHLDKNFGRK 110

[Close]

BLAST of Lsi02G006940 vs. NCBI nr
Match: KAE8652697.1 (hypothetical protein Csa_014317 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 3   SGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILE 62
           SG DVV FKDFFPEM+EKLG KGF+KELR GF LLMDKEKGVIT ESLRK M F GL+LE
Sbjct: 6   SGKDVVLFKDFFPEMLEKLGAKGFIKELRYGFRLLMDKEKGVITAESLRKNMRFFGLVLE 65

Query: 63  DDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRK 117
           D+E+MWMV+EGDLDGDGALSEAEF ILMIKLSPGFMHLSS+ FHQSH D+   K
Sbjct: 66  DEEVMWMVKEGDLDGDGALSEAEFFILMIKLSPGFMHLSSSFFHQSHSDRNAPK 119

[Close]

BLAST of Lsi02G006940 vs. NCBI nr
Match: KAG6573227.1 (Calcium-binding protein KIC, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-36
Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI 60
           MGS N VV F+DFFP MVEKLG+KGFM+ELR GF LLMDKEKGVIT ESLR KMGFLG  
Sbjct: 1   MGSRNGVVLFRDFFPAMVEKLGVKGFMEELRYGFRLLMDKEKGVITAESLRTKMGFLG-- 60

Query: 61  LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRK 117
           L+++E M MVREGDLDGDGALSEAEFC+LM KLSPG M LS+ LF Q     KFRK
Sbjct: 61  LDEEEAMGMVREGDLDGDGALSEAEFCMLMFKLSPGLMQLSTHLFQQ-----KFRK 109

[Close]

BLAST of Lsi02G006940 vs. NCBI nr
Match: KAG7012400.1 (Calcium-binding protein KIC, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 85/116 (73.28%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MGSGNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI 60
           MGS N VV F+DFFP MVEKLG+KGFM+ELR GF LLMDKEKGVIT ESLR KM FLG  
Sbjct: 1   MGSRNGVVLFRDFFPAMVEKLGVKGFMEELRYGFRLLMDKEKGVITAESLRTKMEFLG-- 60

Query: 61  LEDDELMWMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTLFHQSHLDKKFRK 117
           L+++E M MVREGDLDGDGALSEAEFC+LM KLSPG M LS+ LF Q     KFRK
Sbjct: 61  LDEEEAMGMVREGDLDGDGALSEAEFCMLMFKLSPGLMQLSTHLFQQ-----KFRK 109

[Close]

BLAST of Lsi02G006940 vs. TAIR 10
Match: AT5G54490.1 (pinoid-binding protein 1 )

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-21
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMG-FLGL-ILEDDELM 69
           F+DFFP M  KLG +G ++E+  GF LLMDK+KGVIT ESLR+     LGL  L DD++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 70  WMVREGDLDGDGALSEAEFCILMIKLSPGFMHLS 102
           +M+ EGD D DGAL++ EFC+LM +LSP  M  S
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEAS 112

[Close]

BLAST of Lsi02G006940 vs. TAIR 10
Match: AT2G46600.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-20
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLI-LEDDELMW 69
           ++D  P M EK+ ++ F+ EL  GF LL D E+ +IT ESLR+  G LG+  +  ++   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 70  MVREGDLDGDGALSEAEFCILMIKLSPGFMHLSST 104
           MVREGDLDGDGAL++ EFC+LM++LSP  M  + T
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAET 116

[Close]

BLAST of Lsi02G006940 vs. TAIR 10
Match: AT4G27280.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-19
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 10  FKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKK-MGFLGL-ILEDDELM 69
           F DF P M   LG +G + EL +GF LLMD+EKGVIT ESLR+     LGL  L D+++ 
Sbjct: 19  FHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDVR 78

Query: 70  WMVREGDLDGDGALSEAEFCILMIKLSPGFMHLSSTL 105
            M++EGD D DGAL++ EFC+LM +LSP  M  S  L
Sbjct: 79  CMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCL 115

[Close]

BLAST of Lsi02G006940 vs. TAIR 10
Match: AT1G66410.1 (calmodulin 4 )

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-08
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 4   GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILED 63
           GN  + F +F   M +K+      +EL+  F +    + G I+   LR  M  LG  L D
Sbjct: 60  GNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD 119

Query: 64  DELMWMVREGDLDGDGALSEAEFCILMI 92
           +E+  M+RE D+DGDG ++  EF  +M+
Sbjct: 120 EEVEEMIREADVDGDGQINYEEFVKIMM 147

[Close]

BLAST of Lsi02G006940 vs. TAIR 10
Match: AT1G66410.2 (calmodulin 4 )

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-08
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 4   GNDVVFFKDFFPEMVEKLGIKGFMKELRSGFCLLMDKEKGVITPESLRKKMGFLGLILED 63
           GN  + F +F   M +K+      +EL+  F +    + G I+   LR  M  LG  L D
Sbjct: 70  GNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD 129

Query: 64  DELMWMVREGDLDGDGALSEAEFCILMI 92
           +E+  M+RE D+DGDG ++  EF  +M+
Sbjct: 130 EEVEEMIREADVDGDGQINYEEFVKIMM 157

The following BLAST results are available for this feature:

BLAST of Lsi02G006940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSQ6	2.2e-20	55.32	Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1	[more]
Q9ZPX9	1.4e-19	48.42	Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2	[more]
O81831	2.1e-18	52.58	Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1	[more]
Q12798	6.7e-09	37.36	Centrin-1 OS=Homo sapiens OX=9606 GN=CETN1 PE=1 SV=1	[more]
P43645	1.5e-08	35.16	Caltractin (Fragment) OS=Spermatozopsis similis OX=3192 PE=2 SV=1	[more]

BLAST of Lsi02G006940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNY8	8.5e-47	82.46	Calcium-binding protein PBP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0LV00	1.2e-45	81.58	EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G071800 PE=...	[more]
A0A7N2LV84	5.2e-28	64.22	EF-hand domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6J1JUT4	8.8e-28	78.41	calcium-binding protein KIC-like OS=Cucurbita maxima OX=3661 GN=LOC111489942 PE=...	[more]
A0A067GJU9	1.1e-27	63.21	EF-hand domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033591mg...	[more]

BLAST of Lsi02G006940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056934.1	1.7e-46	82.46	calcium-binding protein PBP1 [Cucumis melo var. makuwa] >TYK26362.1 calcium-bind...	[more]
XP_038895967.1	8.7e-46	82.91	calcium-binding protein PBP1-like [Benincasa hispida]	[more]
KAE8652697.1	1.1e-43	79.82	hypothetical protein Csa_014317 [Cucumis sativus]	[more]
KAG6573227.1	1.6e-36	74.14	Calcium-binding protein KIC, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7012400.1	1.4e-35	73.28	Calcium-binding protein KIC, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]

BLAST of Lsi02G006940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54490.1	1.6e-21	55.32	pinoid-binding protein 1	[more]
AT2G46600.1	1.0e-20	48.42	Calcium-binding EF-hand family protein	[more]
AT4G27280.1	1.5e-19	52.58	Calcium-binding EF-hand family protein	[more]
AT1G66410.1	3.4e-08	34.09	calmodulin 4	[more]
AT1G66410.2	3.4e-08	34.09	calmodulin 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 65..93 e-value: 0.0075 score: 25.5
IPR002048	EF-hand domain	PFAM	PF13833	EF-hand_8	coord: 41..90 e-value: 1.6E-13 score: 50.2
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 61..96 score: 10.747526
None	No IPR available	GENE3D	1.10.238.10		coord: 8..117 e-value: 4.5E-16 score: 60.8
None	No IPR available	PANTHER	PTHR47319:SF5	CALCIUM-BINDING PROTEIN PBP1-LIKE	coord: 1..109
IPR044205	Calcium-binding protein KIC/PBP1/KRP1	PANTHER	PTHR47319	CALCIUM-BINDING PROTEIN KIC	coord: 1..109
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 74..86
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 4..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G006940.1	Lsi02G006940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding