Lsi02G006860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G006860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Serine/threonine-protein kinase
Location	chr02: 6142456 .. 6144207 (+)
RNA-Seq Expression	Lsi02G006860
Synteny	Lsi02G006860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTGGTTAGTTGCAGTTGCCAGCTTCTCAAAATCAAAAAGAGGCAGCTCCTGAAGCTTAACTTCAGTCACTTTATCATGCTTCATATCACCAGTGTTCATCAAAAACTTGATCTGCCTTTCCCTTTTCTTTTTCCTTTTCCCTGTTCAATACTTGCAAAATCAGTAAGATAGTTTCAAAGGGAGTTTTTTTTACCTGATTCTCTAGTTTTCTATTTACATAAGCAATATATGCAGCTGATAAGTATGAAGGTTCCTGTTATCACAGAAACTATAATGACCACTTTCATGTCTTTGGTGATTCCACTTTCATCTGTGATAGAAGATACCAAAAAATGTATGAGGCAATTTAAAGGTTCTGTTTGAAATGATTTTCTAAGTACTTTTTGTTTTCACGATGCATTTAGAAAGTCATTCTGTGCGGGATTAATGATTTTATACCAGCTATTTCTGAATATGCCACACGAACATAAATGTCTGCTCCATCATTCTTGAACTGTTGAACGTCAATTAAGTCTCTTCTCCATATCATACAACCAATCCCTGTTTATATGCATAAGCAGAACAAGAACAGTTTGACAAACACTGGACTCTGCACTCATTTTCTGAAGCAACAATCCAAGCTGGAGAATCTGAAATTTTAACCATTTCCATCTTCAAAAACCCATCCTCATCTTTTCCCATTTCAAAACTGATGTTTTTCTTTTCACACTTCAATGGTGAATTCCTCATACACCCACTTCTCCAATTTCCTCTGTTCCATTCCTCTTCCTTCTCTGGCTTAAAACCCATCAAACAACTGCAAATTGGGCTTCTTTAGAATCACAAACCCCAAATGCCCCACAAGCACCATAAACATCACACTCTGTTTCAGGAGCTGACCAAGCGATCTCCCATTTCTGATCTTCAATATTCCAATGATTCTCTTCCAAAATCCCATTGGGGTTCAAGTAGTAGACGAATAACTGAGCTTCGTTTGCATTGGCAATCGAGAGAGAGTAAGTTTTGTTTTCGATTACGAGATTACCTCCATAAAGATAGTCAGTGCCCATACCGGGTATTCCGATGAAGACTTGACCGTCCCATGGACCGGACCTCCAATACGGGCAGCTGTCTTTCCAAATTATAACTTTGGGGATTGTCAGAGGGTCGATTCCAAAGGAGAAATTTCCTGAAGATGGATCAGATGGGGTTTTCCACGACACGATTTCTACTTTCTCGTTTGTGATTGAGTTCGTGATGAATTTTATCATTGGCAAGAATTTGTCTGATGGGTCTTTGAAACTCTCCCATATGATGGTTCCTGAAACAGAGTGTTGCAGAACAAGGTTTCCAGAATCAAGAAGACGAGCGGTGGAATTCACTACAGCGTTAGAAACATTGGAGTTCCAAAGAATTTTGTTGTGTTCATCTAATACTACGAGATTCCCGTCCTTGGATACGGCGAAAACCCCGGATTTGTTTTTGAGAGGCTTGTCTCTGTTAGCTACCCAGAAAACAGTTCGTACAGACACTCGTTTATCCCAAATTCCGACGAACCGATCAGTGGAATTGGGAGGGCTGAAGAAACCCAATTCGAAGAAGCCACGATTGGACAATACAGATTCAGGATCTTTGAGGAATTTTGTCGATGTAATCGTATGTATGCTGCTGGAAAATTTCAAAAGAAAGCAGAGGAGAAGAAGGATCAATGGAATGGTGTTGATGATATGTTTCATGACTGGTGGAGTTGAACCAGGCTCATGGTGA

mRNA sequence

ATGAAAGTGAATCACAAACCCCAAATGCCCCACAAGCACCATAAACATCACACTCTGTTTCAGGAGCTGACCAAGCGATCTCCCATTTCTGATCTTCAATATTCCAATGATTCTCTTCCAAAATCCCATTGGGGTTCAAGTAGTAGACGAATAACTGAGCTTCGTTTGCATTGGCAATCGAGAGAGAGTAAAGGGTCGATTCCAAAGGAGAAATTTCCTGAAGATGGATCAGATGGGGTTTTCCACGACACGATTTCTACTTTCTCGTTTGTGATTGAGTTCGTGATGAATTTTATCATTGGCAAGAATTTGTCTGATGGGTCTTTGAAACTCTCCCATATGATGGTTCCTGAAACAGAGTGTTGCAGAACAAGGTTTCCAGAATCAAGAAGACGAGCGGTGGAATTCACTACAGCGTTAGAAACATTGGAGTTCCAAAGAATTTTGTTGTGTTCATCTAATACTACGAGATTCCCGTCCTTGGATACGGCGAAAACCCCGGATTTGTTTTTGAGAGGCTTGTCTCTGTTAGCTACCCAGAAAACAGTTCGTACAGACACTCGTTTATCCCAAATTCCGACGAACCGATCAGTGGAATTGGGAGGGCTGAAGAAACCCAATTCGAAGAAGCCACGATTGGACAATACAGATTCAGGATCTTTGAGGAATTTTGTCGATGTAATCGTATGTATGCTGCTGGAAAATTTCAAAAGAAAGCAGAGGAGAAGAAGGATCAATGGAATGGTGTTGATGATATGTTTCATGACTGGTGGAGTTGAACCAGGCTCATGGTGA

Coding sequence (CDS)

ATGAAAGTGAATCACAAACCCCAAATGCCCCACAAGCACCATAAACATCACACTCTGTTTCAGGAGCTGACCAAGCGATCTCCCATTTCTGATCTTCAATATTCCAATGATTCTCTTCCAAAATCCCATTGGGGTTCAAGTAGTAGACGAATAACTGAGCTTCGTTTGCATTGGCAATCGAGAGAGAGTAAAGGGTCGATTCCAAAGGAGAAATTTCCTGAAGATGGATCAGATGGGGTTTTCCACGACACGATTTCTACTTTCTCGTTTGTGATTGAGTTCGTGATGAATTTTATCATTGGCAAGAATTTGTCTGATGGGTCTTTGAAACTCTCCCATATGATGGTTCCTGAAACAGAGTGTTGCAGAACAAGGTTTCCAGAATCAAGAAGACGAGCGGTGGAATTCACTACAGCGTTAGAAACATTGGAGTTCCAAAGAATTTTGTTGTGTTCATCTAATACTACGAGATTCCCGTCCTTGGATACGGCGAAAACCCCGGATTTGTTTTTGAGAGGCTTGTCTCTGTTAGCTACCCAGAAAACAGTTCGTACAGACACTCGTTTATCCCAAATTCCGACGAACCGATCAGTGGAATTGGGAGGGCTGAAGAAACCCAATTCGAAGAAGCCACGATTGGACAATACAGATTCAGGATCTTTGAGGAATTTTGTCGATGTAATCGTATGTATGCTGCTGGAAAATTTCAAAAGAAAGCAGAGGAGAAGAAGGATCAATGGAATGGTGTTGATGATATGTTTCATGACTGGTGGAGTTGAACCAGGCTCATGGTGA

Protein sequence

MKVNHKPQMPHKHHKHHTLFQELTKRSPISDLQYSNDSLPKSHWGSSSRRITELRLHWQSRESKGSIPKEKFPEDGSDGVFHDTISTFSFVIEFVMNFIIGKNLSDGSLKLSHMMVPETECCRTRFPESRRRAVEFTTALETLEFQRILLCSSNTTRFPSLDTAKTPDLFLRGLSLLATQKTVRTDTRLSQIPTNRSVELGGLKKPNSKKPRLDNTDSGSLRNFVDVIVCMLLENFKRKQRRRRINGMVLMICFMTGGVEPGSW

Homology

[Close]

BLAST of Lsi02G006860 vs. ExPASy TrEMBL
Match: A0A6A5N552 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00039082 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-17
Identity = 62/131 (47.33%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 64  KGSIPKEKFPEDGSDGVFHDTISTFSFVIEFVMNFIIGKNLSDGSLKLSHMMVPETECCR 123
           +GSI +EK P DGS+G+FHD  STFS ++   + F+ G  +S G LKLSH + P     R
Sbjct: 76  RGSILREKLPMDGSEGLFHDVSSTFSPLLLLFVIFMFGSKVSVGFLKLSHTLSPALS-IR 135

Query: 124 TRFPESRRRAVEFTTALETLEFQRILLCSSNTTRFPSLDTAKTPDLFLRGLSLLATQKTV 183
           TR PES+   VEF   L+T + Q   L    TTRFPS D AK P   L G  LLA   TV
Sbjct: 136 TRLPESKSWQVEFVAMLDTFDDQITFLVPFITTRFPSSDIAKLPKESLSGWFLLANHTTV 195

Query: 184 RTDTRLSQIPT 195
             D+ + QIPT
Sbjct: 196 --DSVMYQIPT 203

[Close]

BLAST of Lsi02G006860 vs. ExPASy TrEMBL
Match: A0A6N2MP23 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS401243 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.6e-16
Identity = 81/199 (40.70%), Postives = 97/199 (48.74%), Query Frame = 0


Query: 33  QYSNDSLPKSHWGSSSRRITELRLHWQSRESKGSIP-----KEKFPEDGSDGVFHDTIST 92
           QY+   L  + W SS    T L    Q ++  G  P     K K P DGS  VF D    
Sbjct: 12  QYTIIDLVSATWMSS----TSLT---QKKKGNGGYPLGSNLKVKLPLDGSSVVFQDVKCR 71

Query: 93  FSFVIEFVMNFIIGKNLSDGSLKLSHMMVPETECCRTRFPESRRRAVEFTTALETLEFQR 152
              VIEF+  FI G++   GSL  S +         TRFPES+  A  F   LE LE Q 
Sbjct: 72  SKPVIEFLPIFIPGRSEFSGSLSSSSL--------TTRFPESKSSATGFLADLEVLEDQM 131

Query: 153 ILLCSSNTTRFPSLDTAKTPDLFLRGLSLLATQKTVRTDTRLSQIPTNRSVELGGLKKPN 212
           +L    + TR PSL    TPD  +RG+SLLATQ TV  DT L  IP  R +EL GLK P 
Sbjct: 132 ML----SLTRSPSLVIFNTPDELVRGVSLLATQTTVMMDTLLYHIPKYRFLELPGLKNPI 191

Query: 213 SKKPRLDNTDSGSLRNFVD 227
            K P  +   S SL   +D
Sbjct: 192 LKLPSAETMLSPSLIEKMD 191

[Close]

BLAST of Lsi02G006860 vs. ExPASy TrEMBL
Match: A0A2P2K769 (Serine/threonine-protein kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-15
Identity = 63/149 (42.28%), Postives = 79/149 (53.02%), Query Frame = 0


Query: 60  SRESKGSIPKEKFPEDGSDGVFHDTISTFSFVIEFVMNFIIGKNLSDGSLKLSH-MMVPE 119
           S   K ++P+EK P DGS+G FHD        I  ++ FI  +N S+G  KLSH ++ P 
Sbjct: 4   SARGKEAVPEEKLPMDGSEGPFHDV------SIILLLIFIFCRNESEGCWKLSHKLLFPL 63

Query: 120 TECCRTRFPESRRRAVEFTTALETLEFQRILLCSSNTTRFPSLDTAKTPDLFLRGLSLLA 179
              C+ RFP S    +E    LET + QRI      TTR PS D   TP+    GL LLA
Sbjct: 64  EPSCKIRFPLSVSSPLELAALLETFDDQRISCFPFKTTRLPSSDIFITPEESPSGLFLLA 123

Query: 180 TQKTVRTDTRLSQIPTNRSVELGGLKKPN 208
           T   V + T L  IPT   VEL GLK P+
Sbjct: 124 THIGVISVTLLYHIPTYLLVELTGLKNPS 146

[Close]

BLAST of Lsi02G006860 vs. ExPASy TrEMBL
Match: A0A392QFG5 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.2e-13
Identity = 48/108 (44.44%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 75  DGSDGVFHDTISTFSFVIEFVMNFIIGKNLSDGSLKLSHMMVPETECCRTRFPESRRRAV 134
           DGS+GVFHD   TFS VI  ++ F+ G  + +G  KLSH+++P      TRFP SR   V
Sbjct: 2   DGSNGVFHDMSFTFSPVILLLVTFMFGNIIFEGCWKLSHIVLPVVSARSTRFPVSRCLEV 61

Query: 135 EFTTALETLEFQRILLCSSNTTRFPSLDTAKTPDLFLRGLSLLATQKT 183
           E     +T + Q       +TTR PSLD   TP+  LRG SLL+T  T
Sbjct: 62  ELVAIFDTFDVQISSFFPFSTTRLPSLDILTTPEESLRGCSLLSTNTT 109

[Close]

BLAST of Lsi02G006860 vs. ExPASy TrEMBL
Match: A0A3Q7F574 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.8e-11
Identity = 53/141 (37.59%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 44  WGSSSRRITELRLHWQSRESKGSIPK-EKFPEDGSDGVFHDTISTFSFVIEFVMNFIIGK 103
           W  S  +   L L   S  +  S+ + EK P DGS+G+ HD       V+     F++ K
Sbjct: 55  WRISEHQNPALSLTAASETNLASLAQAEKLPTDGSEGLIHDFSRFVVLVLTSTPIFMVCK 114

Query: 104 NLSDGSLKLSHMMVPETECCRTRFPESRRRAVEFTTALETLEFQRILLCSSNTTRFPSLD 163
             S+GS KLS   +P     + +FP S+  AVEF TA E  +   +L C    TRFPS D
Sbjct: 115 KQSEGSRKLSQRTLPLELSFKIKFPVSKSCAVEFLTAGEIFDDHILLFCEFKITRFPSSD 174

Query: 164 TAKTPDLFLRGLSLLATQKTV 184
               P    +GLSLLAT  TV
Sbjct: 175 IVTLPLESCKGLSLLATHTTV 195

[Close]

BLAST of Lsi02G006860 vs. NCBI nr
Match: KAF1882434.1 (hypothetical protein Lal_00039082 [Lupinus albus])

HSP 1 Score: 99.4 bits (246), Expect = 5.0e-17
Identity = 62/131 (47.33%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 64  KGSIPKEKFPEDGSDGVFHDTISTFSFVIEFVMNFIIGKNLSDGSLKLSHMMVPETECCR 123
           +GSI +EK P DGS+G+FHD  STFS ++   + F+ G  +S G LKLSH + P     R
Sbjct: 76  RGSILREKLPMDGSEGLFHDVSSTFSPLLLLFVIFMFGSKVSVGFLKLSHTLSPALS-IR 135

Query: 124 TRFPESRRRAVEFTTALETLEFQRILLCSSNTTRFPSLDTAKTPDLFLRGLSLLATQKTV 183
           TR PES+   VEF   L+T + Q   L    TTRFPS D AK P   L G  LLA   TV
Sbjct: 136 TRLPESKSWQVEFVAMLDTFDDQITFLVPFITTRFPSSDIAKLPKESLSGWFLLANHTTV 195

Query: 184 RTDTRLSQIPT 195
             D+ + QIPT
Sbjct: 196 --DSVMYQIPT 203

[Close]

BLAST of Lsi02G006860 vs. NCBI nr
Match: MCI22470.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-12
Identity = 48/108 (44.44%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 75  DGSDGVFHDTISTFSFVIEFVMNFIIGKNLSDGSLKLSHMMVPETECCRTRFPESRRRAV 134
           DGS+GVFHD   TFS VI  ++ F+ G  + +G  KLSH+++P      TRFP SR   V
Sbjct: 2   DGSNGVFHDMSFTFSPVILLLVTFMFGNIIFEGCWKLSHIVLPVVSARSTRFPVSRCLEV 61

Query: 135 EFTTALETLEFQRILLCSSNTTRFPSLDTAKTPDLFLRGLSLLATQKT 183
           E     +T + Q       +TTR PSLD   TP+  LRG SLL+T  T
Sbjct: 62  ELVAIFDTFDVQISSFFPFSTTRLPSLDILTTPEESLRGCSLLSTNTT 109

[Close]

BLAST of Lsi02G006860 vs. NCBI nr
Match: KYP40813.1 (hypothetical protein KK1_037827 [Cajanus cajan])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-09
Identity = 51/114 (44.74%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 123 RTRFPESRRRAVEFT--TALETLEFQRILLCSSN----TTRFPSLDTAKTPDLFLRGLSL 182
           +T+FP S+  A   T   A+E LE QR+L+        +TRFP +   +TP++ +RG+SL
Sbjct: 9   KTKFPVSKSLAETATLLDAIEALEDQRVLVLVLVVLWWSTRFPWVLMERTPEVSMRGVSL 68

Query: 183 LATQKTVRTDTRLSQIPTNRSVELGGLKKPNSKKPR-LDNTDSGSLRNFVDVIV 230
           LAT  TV ++  L QIPT R VE GGLKKP++K PR L++  S SL  +  V+V
Sbjct: 69  LATHTTVCSEILLYQIPTYRFVEFGGLKKPSAKFPRSLESKTSPSLMGWFAVMV 122

[Close]

BLAST of Lsi02G006860 vs. NCBI nr
Match: KYP35978.1 (hypothetical protein KK1_042932 [Cajanus cajan])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-09
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 115 MVPETECC---RTRFPESRRRAV-EFTTALETLEFQRILLCSSNTTRFPSLDTAKTPDLF 174
           M+P    C     +FPES+R A+  FT  ++ L+ Q +L   S +TR P   + + P+LF
Sbjct: 1   MLPSLVSCPLFTIKFPESKRLAIGSFTALVDILDDQMVLFVPSRSTRIPFSLSLRIPELF 60

Query: 175 LRGLSLLATQKTVRTDTRLSQIPTNRSVELGGLKKPNSKKPRLDNTDSGSL 222
            RGL LLAT  TV+ D  +  IP  R VEL GLKKP S  P L+   S SL
Sbjct: 61  SRGLFLLATHTTVKGDAFVYHIPKYRLVELPGLKKPTSIIPPLETKVSPSL 111

[Close]

BLAST of Lsi02G006860 vs. NCBI nr
Match: CBI20436.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-08
Identity = 51/124 (41.13%), Postives = 63/124 (50.81%), Query Frame = 0


Query: 101 GKNLSDGSLKLSHMMVPETEC---CRTRFPESRRRAVEFTTALETLEFQRILLCSSNTTR 160
           G+ +S G  KL H     +       TRFP+S+  AV F    + LE Q  LL     TR
Sbjct: 3   GRRVSHGQSKLCHKKFSGSSSFPFLSTRFPDSKSWAVGFCADRDALEDQMELLVPLRITR 62

Query: 161 FPSLDTAKTPDLFLRGLSLLATQKTVRTDTRLSQIPTNRSVELGGLKKPNSKKPRLDNTD 220
            P   T KTP+  + G+SLL T  TV T T L  IP  R +EL G KKP+SK P  +   
Sbjct: 63  VPWSVTFKTPNESVSGISLLPTHTTVGTLTFLYHIPRYRFLELPGWKKPSSKLPPAETMV 122

Query: 221 SGSL 222
           S SL
Sbjct: 123 SPSL 126

The following BLAST results are available for this feature:

BLAST of Lsi02G006860 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G006860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5N552	2.4e-17	47.33	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00039082 PE=4 SV=1	[more]
A0A6N2MP23	4.6e-16	40.70	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS401243 PE=4 SV=...	[more]
A0A2P2K769	3.0e-15	42.28	Serine/threonine-protein kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A392QFG5	6.2e-13	44.44	Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1	[more]
A0A3Q7F574	5.8e-11	37.59	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]

BLAST of Lsi02G006860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF1882434.1	5.0e-17	47.33	hypothetical protein Lal_00039082 [Lupinus albus]	[more]
MCI22470.1	1.3e-12	44.44	hypothetical protein [Trifolium medium]	[more]
KYP40813.1	1.3e-09	44.74	hypothetical protein KK1_037827 [Cajanus cajan]	[more]
KYP35978.1	2.3e-09	43.24	hypothetical protein KK1_042932 [Cajanus cajan]	[more]
CBI20436.3	1.9e-08	41.13	unnamed protein product, partial [Vitis vinifera]	[more]

BLAST of Lsi02G006860 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G006860.1	Lsi02G006860.1	mRNA