Lsi02G005530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G005530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ankyrin repeat-containing protein
Location	chr02: 4855334 .. 4855789 (-)
RNA-Seq Expression	Lsi02G005530
Synteny	Lsi02G005530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCTTGAAGAAGAATAATATTCAAAAAAATGTGAGGATAAGGAAGAAGAGAGTGAAGTACTGTGTGAGAAAATCCCACCGCCACACAAATACTGCTGTCCCAAATTCTCCATCTTCTTCATCTACTTTTAATTATCCCATTATTAATAATATTCCCAATAACACCAATTTCATCGACAAATCATCTCATCATTCTCCCCCACACGAAATTCAACAGGAACATGCTTCTAATTCCTTCCATGTCCACTTGTCGGATACCCTTTCTTCCATTGTCGAAGATGATCCTGTTCCTCCGCCGTCTACGGCTGACGACGGCCAAGTGGAGGCGGATGCCAGTGGGGTCGGTTGCAGGGGATTGGAGAGCCGGACAATAGACATTGCAGCAGTTTTGGAAGATCAACAACGGAATTCTAATGCTAAGATCAAGATCGAAGCTCCATCACGTACGTAA

mRNA sequence

ATGGCTCCCTTGAAGAAGAATAATATTCAAAAAAATGTGAGGATAAGGAAGAAGAGAGTGAAGTACTGTGTGAGAAAATCCCACCGCCACACAAATACTGCTGTCCCAAATTCTCCATCTTCTTCATCTACTTTTAATTATCCCATTATTAATAATATTCCCAATAACACCAATTTCATCGACAAATCATCTCATCATTCTCCCCCACACGAAATTCAACAGGAACATGCTTCTAATTCCTTCCATGTCCACTTGTCGGATACCCTTTCTTCCATTGTCGAAGATGATCCTGTTCCTCCGCCGTCTACGGCTGACGACGGCCAAGTGGAGGCGGATGCCAGTGGGGTCGGTTGCAGGGGATTGGAGAGCCGGACAATAGACATTGCAGCAGTTTTGGAAGATCAACAACGGAATTCTAATGCTAAGATCAAGATCGAAGCTCCATCACGTACGTAA

Coding sequence (CDS)

ATGGCTCCCTTGAAGAAGAATAATATTCAAAAAAATGTGAGGATAAGGAAGAAGAGAGTGAAGTACTGTGTGAGAAAATCCCACCGCCACACAAATACTGCTGTCCCAAATTCTCCATCTTCTTCATCTACTTTTAATTATCCCATTATTAATAATATTCCCAATAACACCAATTTCATCGACAAATCATCTCATCATTCTCCCCCACACGAAATTCAACAGGAACATGCTTCTAATTCCTTCCATGTCCACTTGTCGGATACCCTTTCTTCCATTGTCGAAGATGATCCTGTTCCTCCGCCGTCTACGGCTGACGACGGCCAAGTGGAGGCGGATGCCAGTGGGGTCGGTTGCAGGGGATTGGAGAGCCGGACAATAGACATTGCAGCAGTTTTGGAAGATCAACAACGGAATTCTAATGCTAAGATCAAGATCGAAGCTCCATCACGTACGTAA

Protein sequence

MAPLKKNNIQKNVRIRKKRVKYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPNNTNFIDKSSHHSPPHEIQQEHASNSFHVHLSDTLSSIVEDDPVPPPSTADDGQVEADASGVGCRGLESRTIDIAAVLEDQQRNSNAKIKIEAPSRT

Homology

[Close]

BLAST of Lsi02G005530 vs. ExPASy TrEMBL
Match: A0A5D3BJ59 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005260 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-32
Identity = 103/161 (63.98%), Postives = 123/161 (76.40%), Query Frame = 0


Query: 1   MAP--LKKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPN 60
           MAP   KKN+I+  NVRIRKKRV  +YC+RKSHRHT   +P+  SSSSTFN+PI NNIPN
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTK--LPS--SSSSTFNHPINNNIPN 60

Query: 61  NTNFIDKSSHHSPPHEIQQEH-ASNSFHVHLS-DTLSSIVEDDPVPPPSTA-DDGQVEAD 120
           NTNFI +SSH SP HEIQ+EH  SNSFH HLS DT+SSI+      P STA DDGQ+EA+
Sbjct: 61  NTNFIPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIH-----PQSTADDDGQLEAN 120

Query: 121 AS-GVGCRGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPSRT 152
           A+ G+G RG + +TIDIAAVLE+QQ RNS+     +APSRT
Sbjct: 121 AAGGLGSRGSDCQTIDIAAVLENQQLRNSSNAKNSDAPSRT 152

[Close]

BLAST of Lsi02G005530 vs. ExPASy TrEMBL
Match: A0A0A0LUL7 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G058070 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 5   KKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPNNTNFID 64
           KKN I+  NVRIRKKRV  KYC+RK+H HT   +P+  SSSSTFN+PI  NIPNNTNFI 
Sbjct: 7   KKNGIKSNNVRIRKKRVNLKYCIRKAHHHTK--LPS--SSSSTFNHPININIPNNTNFIP 66

Query: 65  KSSHHSPPHEIQQE-HASNSFHVHLS-DTLSSIVEDDPVPPPSTADDGQVEADA-SGVGC 124
           +SSH SP  EIQ+E +ASNSFH HLS DT+SSI     +PPPSTADDGQ+E DA  G+G 
Sbjct: 67  RSSHQSPSREIQEEQYASNSFHAHLSEDTISSI-----IPPPSTADDGQLEVDAGGGLGS 126

Query: 125 RGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 127 RGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

[Close]

BLAST of Lsi02G005530 vs. ExPASy TrEMBL
Match: A0A5A7UP23 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002300 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 101/159 (63.52%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 1   MAP--LKKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPN 60
           MAP   KKN+I+  NVRIRKKRV  +YC+RKSHRHT   +P+  SSSSTFN+PI NNIPN
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTK--LPS--SSSSTFNHPINNNIPN 60

Query: 61  NTNFIDKSSHHSPPHEIQQEH-ASNSFHVHLS-DTLSSIVEDDPVPPPSTA-DDGQVEAD 120
           NTNFI +SSH SP HEIQ+EH  SNSFH HLS DT+SSI+      P STA DDGQ+EA+
Sbjct: 61  NTNFIPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIH-----PQSTADDDGQLEAN 120

Query: 121 AS-GVGCRGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           A+ G+G RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 121 AAGGLGSRGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150

[Close]

BLAST of Lsi02G005530 vs. ExPASy TrEMBL
Match: A0A1S4DY91 (uncharacterized protein LOC103484975 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484975 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 101/159 (63.52%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 1   MAP--LKKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPN 60
           MAP   KKN+I+  NVRIRKKRV  +YC+RKSHRHT   +P+  SSSSTFN+PI NNIPN
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTK--LPS--SSSSTFNHPINNNIPN 60

Query: 61  NTNFIDKSSHHSPPHEIQQEH-ASNSFHVHLS-DTLSSIVEDDPVPPPSTA-DDGQVEAD 120
           NTNFI +SSH SP HEIQ+EH  SNSFH HLS DT+SSI+      P STA DDGQ+EA+
Sbjct: 61  NTNFIPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIH-----PQSTADDDGQLEAN 120

Query: 121 AS-GVGCRGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           A+ G+G RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 121 AAGGLGSRGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150

[Close]

BLAST of Lsi02G005530 vs. ExPASy TrEMBL
Match: A0A1S3B243 (uncharacterized protein LOC103484975 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484975 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 101/159 (63.52%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 1   MAP--LKKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPN 60
           MAP   KKN+I+  NVRIRKKRV  +YC+RKSHRHT   +P+  SSSSTFN+PI NNIPN
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTK--LPS--SSSSTFNHPINNNIPN 60

Query: 61  NTNFIDKSSHHSPPHEIQQEH-ASNSFHVHLS-DTLSSIVEDDPVPPPSTA-DDGQVEAD 120
           NTNFI +SSH SP HEIQ+EH  SNSFH HLS DT+SSI+      P STA DDGQ+EA+
Sbjct: 61  NTNFIPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIH-----PQSTADDDGQLEAN 120

Query: 121 AS-GVGCRGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           A+ G+G RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 121 AAGGLGSRGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150

[Close]

BLAST of Lsi02G005530 vs. NCBI nr
Match: TYJ99313.1 (uncharacterized protein E5676_scaffold248G005260 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 4.1e-32
Identity = 103/161 (63.98%), Postives = 123/161 (76.40%), Query Frame = 0


Query: 1   MAP--LKKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPN 60
           MAP   KKN+I+  NVRIRKKRV  +YC+RKSHRHT   +P+  SSSSTFN+PI NNIPN
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTK--LPS--SSSSTFNHPINNNIPN 60

Query: 61  NTNFIDKSSHHSPPHEIQQEH-ASNSFHVHLS-DTLSSIVEDDPVPPPSTA-DDGQVEAD 120
           NTNFI +SSH SP HEIQ+EH  SNSFH HLS DT+SSI+      P STA DDGQ+EA+
Sbjct: 61  NTNFIPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIH-----PQSTADDDGQLEAN 120

Query: 121 AS-GVGCRGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPSRT 152
           A+ G+G RG + +TIDIAAVLE+QQ RNS+     +APSRT
Sbjct: 121 AAGGLGSRGSDCQTIDIAAVLENQQLRNSSNAKNSDAPSRT 152

[Close]

BLAST of Lsi02G005530 vs. NCBI nr
Match: XP_011652463.1 (uncharacterized protein LOC101216177 isoform X3 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-31
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 5   KKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPNNTNFID 64
           KKN I+  NVRIRKKRV  KYC+RK+H HT   +P+  SSSSTFN+PI  NIPNNTNFI 
Sbjct: 7   KKNGIKSNNVRIRKKRVNLKYCIRKAHHHTK--LPS--SSSSTFNHPININIPNNTNFIP 66

Query: 65  KSSHHSPPHEIQQE-HASNSFHVHLS-DTLSSIVEDDPVPPPSTADDGQVEADA-SGVGC 124
           +SSH SP  EIQ+E +ASNSFH HLS DT+SSI     +PPPSTADDGQ+E DA  G+G 
Sbjct: 67  RSSHQSPSREIQEEQYASNSFHAHLSEDTISSI-----IPPPSTADDGQLEVDAGGGLGS 126

Query: 125 RGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 127 RGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

[Close]

BLAST of Lsi02G005530 vs. NCBI nr
Match: XP_031736037.1 (ankyrin repeat-containing protein ITN1 isoform X2 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-31
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 5   KKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPNNTNFID 64
           KKN I+  NVRIRKKRV  KYC+RK+H HT   +P+  SSSSTFN+PI  NIPNNTNFI 
Sbjct: 7   KKNGIKSNNVRIRKKRVNLKYCIRKAHHHTK--LPS--SSSSTFNHPININIPNNTNFIP 66

Query: 65  KSSHHSPPHEIQQE-HASNSFHVHLS-DTLSSIVEDDPVPPPSTADDGQVEADA-SGVGC 124
           +SSH SP  EIQ+E +ASNSFH HLS DT+SSI     +PPPSTADDGQ+E DA  G+G 
Sbjct: 67  RSSHQSPSREIQEEQYASNSFHAHLSEDTISSI-----IPPPSTADDGQLEVDAGGGLGS 126

Query: 125 RGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 127 RGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

[Close]

BLAST of Lsi02G005530 vs. NCBI nr
Match: XP_011652459.1 (ankyrin repeat-containing protein ITN1 isoform X1 [Cucumis sativus] >KGN64472.1 hypothetical protein Csa_013218 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-31
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 5   KKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPNNTNFID 64
           KKN I+  NVRIRKKRV  KYC+RK+H HT   +P+  SSSSTFN+PI  NIPNNTNFI 
Sbjct: 7   KKNGIKSNNVRIRKKRVNLKYCIRKAHHHTK--LPS--SSSSTFNHPININIPNNTNFIP 66

Query: 65  KSSHHSPPHEIQQE-HASNSFHVHLS-DTLSSIVEDDPVPPPSTADDGQVEADA-SGVGC 124
           +SSH SP  EIQ+E +ASNSFH HLS DT+SSI     +PPPSTADDGQ+E DA  G+G 
Sbjct: 67  RSSHQSPSREIQEEQYASNSFHAHLSEDTISSI-----IPPPSTADDGQLEVDAGGGLGS 126

Query: 125 RGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 127 RGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 149

[Close]

BLAST of Lsi02G005530 vs. NCBI nr
Match: XP_008440605.2 (PREDICTED: uncharacterized protein LOC103484975 isoform X1 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-31
Identity = 101/159 (63.52%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 1   MAP--LKKNNIQ-KNVRIRKKRV--KYCVRKSHRHTNTAVPNSPSSSSTFNYPIINNIPN 60
           MAP   KKN+I+  NVRIRKKRV  +YC+RKSHRHT   +P+  SSSSTFN+PI NNIPN
Sbjct: 1   MAPSFKKKNDIKSNNVRIRKKRVNLRYCMRKSHRHTK--LPS--SSSSTFNHPINNNIPN 60

Query: 61  NTNFIDKSSHHSPPHEIQQEH-ASNSFHVHLS-DTLSSIVEDDPVPPPSTA-DDGQVEAD 120
           NTNFI +SSH SP HEIQ+EH  SNSFH HLS DT+SSI+      P STA DDGQ+EA+
Sbjct: 61  NTNFIPRSSHQSPSHEIQEEHYGSNSFHAHLSEDTISSIIH-----PQSTADDDGQLEAN 120

Query: 121 AS-GVGCRGLESRTIDIAAVLEDQQ-RNSNAKIKIEAPS 150
           A+ G+G RG + +TIDIAAVLE+QQ RNS+     +APS
Sbjct: 121 AAGGLGSRGSDCQTIDIAAVLENQQLRNSSNAKNSDAPS 150

The following BLAST results are available for this feature:

BLAST of Lsi02G005530 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G005530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJ59	2.0e-32	63.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LUL7	1.7e-31	63.82	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G058...	[more]
A0A5A7UP23	2.9e-31	63.52	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S4DY91	2.9e-31	63.52	uncharacterized protein LOC103484975 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B243	2.9e-31	63.52	uncharacterized protein LOC103484975 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lsi02G005530 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99313.1	4.1e-32	63.98	uncharacterized protein E5676_scaffold248G005260 [Cucumis melo var. makuwa]	[more]
XP_011652463.1	3.5e-31	63.82	uncharacterized protein LOC101216177 isoform X3 [Cucumis sativus]	[more]
XP_031736037.1	3.5e-31	63.82	ankyrin repeat-containing protein ITN1 isoform X2 [Cucumis sativus]	[more]
XP_011652459.1	3.5e-31	63.82	ankyrin repeat-containing protein ITN1 isoform X1 [Cucumis sativus] >KGN64472.1 ...	[more]
XP_008440605.2	6.0e-31	63.52	PREDICTED: uncharacterized protein LOC103484975 isoform X1 [Cucumis melo]	[more]

BLAST of Lsi02G005530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G005530.1	Lsi02G005530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane