Lsi02G005280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G005280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Centromere protein S-like
Location	chr02: 4586481 .. 4588701 (-)
RNA-Seq Expression	Lsi02G005280
Synteny	Lsi02G005280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCGCCAGTGGCATTTCTGGAGGGAAATAAAGGCGGATGGAAGCAGTGACAGTGCCGCCAAATGCAGTAAATTGTGAATCCAGAAGCCTCTGCTCTGCAATGGAAACTGGGATGGAAGAAGACGACTCCGCCTCCGAACTCTTGAGGGACAGATTCCGACTCTCCACCATTTCTATCGCTGAAGCTGAAGGTTAATTATCTTCATCTTACTCTCTTCATCTTCGAGCCTGTCTTCTTTTATATGTAATATAAGCTGAATCGACCGGAGAAAGAGAAAGTATTATCCTCCGATTACTGAATGCGAAGGCGAACTTTCCATATTTCTGTTTGGCTTACTCTATTTTCGAACTGTTTGGTTTGTTTTTCAGCGAAGAGAAGCGGCATGGAAATTTCTGAACCCGTGATGACTTGTGTCGCTGATTTAGCCTTCAAATATACAAGTTAGTTTACTTTTCTTTTCTGCCTGTTTTGAGTCTGCAATGTTATTTTGAGCACTTTGTTTCTACGTGACTAATCCCACCATTCGGAGCACTTTCATTTGTTGATTCTTCATTATGTGGATAATCTAATTGCTAATTATTTTAATTTCCCTTCTCTTCTACCGGTGTTTTCATCATTTTTAGGTAGCTTATATGTGATTTCAATTATAAATTTCCTTATTATTTAGCATGCATTCGGTTTGTTGGGACGCCTCTCTGAGCTTTGTTGTTAAATTGTGTGACCTAGTTGGAAGAAACTATATATCTTTGGTCAATTCTGTTTCCAGAAGAACAAATGATGGAGAGACAATTGTGATATCTTAAAGAAAGACTTTGCATGATACTTTTGGATTCTAATCAGATGTTCTTATAGTTCATATGAATGTTTCTTCTTATTCTACCTTGAGACTTACACCTTACAGCGATCATGTTAGGTGTAAACCCTTAACTCTCGTTGTGCTCTTGTGGCGCTAATCTTGAGACCTAGATTTTGTGCTTCGCTTCAAGGAATACAATGGGAAGGATAGTCCTAGTTGTCTTGTGTTTCTTTGTTTATATTTCAATCACGTAAAGAAGACATATATTATTTTAATTTATATTTATATATTAGCTTCAAGCCATTTTCTGTTATTGATGAATGTTTAATTCATTGTCTAAAAGAAGTAAATATATACTTATGAATGATTTTGTAGGTTTATAAAGTTTTGACCAGACTTTAAGTTCATATCTTGGTACAGCGTCTATTTGTAGTCAGAGGGCTAACATATGAACCACCAATGGTATATATAATATATTAGATATTATTGGGTTCTGATCCATCTCAAAATCAATTGGCAAAGAGAGGAATAGTCCATCTATCTTTTAAAGAGTGTGAGATCCCTTGATTTGTCCAATGTAGAATTCTCAACATACCCTCTCAAGATGGTGCCTCTTTTGGGTTCATCATTCTTGATGGATCCCAATTTCTTTTTATTGGACCGAATACCCATTTGAGTTTTATGGGCTCTGACCCCATATTAGATAATATGGGATTCCATCTCAAAACCAATTGATAAGGAGAGTGTAATCCATCTATCTTATAAAGAGTGTGAGGTCCCTTGATTTGTCCAATGTGGGATCCTCAACATAGTACATGCAAGGAAAGCAAATTTTTGTTTACTGTGCTGCAGTAGTTCTAGTTGCATCTAAGTCAGCAAGGAAAGAAGATAATTCTGTCATATTTATATTTGCTTTGTTTTTATGATTCTCAAAGTGTTGCAATGAGATAACGGAATGATAACTTGTGTAGCAGAACAGTTGGCGAAGGACCTTGAGTTATTTGTTCAGCATGCTGGTCGGAAATCTGTGAATACAGAAGATGTAATACTATCAGGTTAGATTGTCCGATTCCCAAGTTGTTGTATTACTGTCTAGTTATATTTAGTCCATATGCAACAGACTTTAAGTATTACTTAATTGCCTAAACCTCTTCGCTTCTGCTTCATTTTGGTCTCAGCCCATAGAAATGAGCATTTGGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACTAAAGAACCTCAAGGTGAGAGAGCGAGAAAAGGCACCAAAAAAGGAAGATAGAGATAGAGGTGTAGTGCATATTACTGACGCCTAATCACACCTCCCATCGGGCTGATCTCTAGTTAACAAGGGTGCATACCAACAAGCGATGGCAATAGCTTATGATTTCTTTCCTTTTCTTGGTTATACTAACTAG

mRNA sequence

CGTCGCCAGTGGCATTTCTGGAGGGAAATAAAGGCGGATGGAAGCAGTGACAGTGCCGCCAAATGCAGTAAATTGTGAATCCAGAAGCCTCTGCTCTGCAATGGAAACTGGGATGGAAGAAGACGACTCCGCCTCCGAACTCTTGAGGGACAGATTCCGACTCTCCACCATTTCTATCGCTGAAGCTGAAGCGAAGAGAAGCGGCATGGAAATTTCTGAACCCGTGATGACTTGTGTCGCTGATTTAGCCTTCAAATATACAACAGAACAGTTGGCGAAGGACCTTGAGTTATTTGTTCAGCATGCTGGTCGGAAATCTGTGAATACAGAAGATGTAATACTATCAGCCCATAGAAATGAGCATTTGGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACTAAAGAACCTCAAGTTAACAAGGGTGCATACCAACAAGCGATGGCAATAGCTTATGATTTCTTTCCTTTTCTTGGTTATACTAACTAG

Coding sequence (CDS)

ATGGAAGCAGTGACAGTGCCGCCAAATGCAGTAAATTGTGAATCCAGAAGCCTCTGCTCTGCAATGGAAACTGGGATGGAAGAAGACGACTCCGCCTCCGAACTCTTGAGGGACAGATTCCGACTCTCCACCATTTCTATCGCTGAAGCTGAAGCGAAGAGAAGCGGCATGGAAATTTCTGAACCCGTGATGACTTGTGTCGCTGATTTAGCCTTCAAATATACAACAGAACAGTTGGCGAAGGACCTTGAGTTATTTGTTCAGCATGCTGGTCGGAAATCTGTGAATACAGAAGATGTAATACTATCAGCCCATAGAAATGAGCATTTGGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACTAAAGAACCTCAAGTTAACAAGGGTGCATACCAACAAGCGATGGCAATAGCTTATGATTTCTTTCCTTTTCTTGGTTATACTAACTAG

Protein sequence

MEAVTVPPNAVNCESRSLCSAMETGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQVNKGAYQQAMAIAYDFFPFLGYTN

Homology

[Close]

BLAST of Lsi02G005280 vs. ExPASy Swiss-Prot
Match: Q9FI55 (Protein MHF1 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF1 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.6e-33
Identity = 77/131 (58.78%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 8   PNAVNCESRSLCSAMETGME-----------EDDSASELLRDRFRLSTISIAEAEAKRSG 67
           P     +  S C AM+ G E           E+ S  +L+RDRFRLS ISIAEAEAK++G
Sbjct: 85  PTITQAKKPSYCFAMDVGGEDISDLQVDQIVEEYSMDDLIRDRFRLSAISIAEAEAKKNG 144

Query: 68  MEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTS 127
           MEI  PV+ CVADLAFKY  E +AKDLELF  HAGRK VN +DV+LSAHRN++LAA L S
Sbjct: 145 MEIGGPVVACVADLAFKY-AENVAKDLELFAHHAGRKVVNMDDVVLSAHRNDNLAASLRS 204

[Close]

BLAST of Lsi02G005280 vs. ExPASy Swiss-Prot
Match: Q6NRI8 (Centromere protein S OS=Xenopus laevis OX=8355 GN=cenps PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-05
Identity = 33/114 (28.95%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           M  G EE  S ++ L+        S+ +  A    ++ S+  +  ++++ F+   E  AK
Sbjct: 1   MAEGQEEHFSRTQRLKAAVHYVVGSLCQEVADDKEIDFSKQAIAAISEITFR-QCESFAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTS-----ICNDLKTKEPQVNK 131
           DLE+F +HA R ++N +DV L A R+  L A ++        N L+ KE +  K
Sbjct: 61  DLEIFARHAKRTTINMDDVKLLARRSRSLYAHISKCSDEIAANSLEQKEKKKKK 113

[Close]

BLAST of Lsi02G005280 vs. ExPASy Swiss-Prot
Match: Q8N2Z9 (Centromere protein S OS=Homo sapiens OX=9606 GN=CENPS PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.6e-05
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 23  ETGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKD 82
           ET  ++  S  + L+     +   + E  A    M+ S+  +  +++L F+   E  AKD
Sbjct: 6   ETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFR-QCENFAKD 65

Query: 83  LELFVQHAGRKSVNTEDVILSAHRNEHLAAILT 116
           LE+F +HA R ++NTEDV L A R+  L   +T
Sbjct: 66  LEMFARHAKRTTINTEDVKLLARRSNSLLKYIT 97

[Close]

BLAST of Lsi02G005280 vs. ExPASy Swiss-Prot
Match: Q2TBR7 (Centromere protein S OS=Bos taurus OX=9913 GN=CENPS PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-04
Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 47  IAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHR 106
           + E  A    M+ S+  +  ++++ F    E  AKDLE+F +HA R ++NTEDV L A R
Sbjct: 30  LCEEVASDKDMQFSKQTIAAISEVTFG-QCENFAKDLEMFARHAKRSTINTEDVKLLARR 89

Query: 107 NEHLAAILTSICNDL 122
           +  L   +T    D+
Sbjct: 90  SHSLLKYITEKNEDI 103

[Close]

BLAST of Lsi02G005280 vs. ExPASy Swiss-Prot
Match: O74807 (Inner kinetochore subunit mhf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mhf1 PE=3 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 32/98 (32.65%), Postives = 50/98 (51.02%), Query Frame = 0


Query: 38  DRFRLSTISIAEAEAKRSGMEI--SEPVMTCVADLAFKYTTEQ-------LAKDLELFVQ 97
           +RF+     + +    R+  E+  SE     V +L     TE        LAKD+E F +
Sbjct: 5   ERFKAEIFHVTQEVCNRTASELTESESRNVIVDELFCVGVTEMVWEQIRVLAKDIEAFAE 64

Query: 98  HAGRKSVNTEDVILSAHRNEHLAAILTSICND-LKTKE 126
           HAGRK+V  +DV+L   RNE L  I+ +   + +K+K+
Sbjct: 65  HAGRKTVQPQDVLLCCRRNEGLYEIINNFHKESIKSKK 102

[Close]

BLAST of Lsi02G005280 vs. ExPASy TrEMBL
Match: A0A5A7UM53 (Centromere protein S isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002010 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.4e-46
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           MET MEEDDSASELLRDRFRLSTISIAEAEA +SGMEISEPVMTCVADLAFK+TTEQLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQ 128
           DLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDLK KEPQ
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQ 106

[Close]

BLAST of Lsi02G005280 vs. ExPASy TrEMBL
Match: A0A1S3B159 (centromere protein S isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484694 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.4e-46
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           MET MEEDDSASELLRDRFRLSTISIAEAEA +SGMEISEPVMTCVADLAFK+TTEQLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQ 128
           DLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDLK KEPQ
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQ 106

[Close]

BLAST of Lsi02G005280 vs. ExPASy TrEMBL
Match: A0A6J1C623 (protein MHF1 homolog OS=Momordica charantia OX=3673 GN=LOC111008732 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           METG EEDD+A+ELL DRFRLSTISIAEAEAKR+GMEISEPVMTCVA+LAFKYTTEQLAK
Sbjct: 1   METGREEDDTATELLSDRFRLSTISIAEAEAKRNGMEISEPVMTCVAELAFKYTTEQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQVNK 131
           DLELF QHAGRKSVNTEDVILSAHRNEHLAA LTS CNDLKTKEPQ  +
Sbjct: 61  DLELFAQHAGRKSVNTEDVILSAHRNEHLAASLTSFCNDLKTKEPQTER 109

[Close]

BLAST of Lsi02G005280 vs. ExPASy TrEMBL
Match: A0A0A0LR97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051770 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.0e-45
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           METGMEEDDSASELLRDRFRLS+ISIAEAEA +SGMEISEPVMTCVADLAFKY T+QLAK
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQ 128
           DLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDLKTKEPQ
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQ 105

[Close]

BLAST of Lsi02G005280 vs. ExPASy TrEMBL
Match: A0A5D3BHQ8 (Centromere protein S isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004950 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.9e-43
Identity = 97/106 (91.51%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           MET MEEDDSASELLRDRFRLSTISIAEAEA +SGMEISEPVMTCVADLAFK+ T+QLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKF-TKQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQ 128
           DLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDLK KEPQ
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQ 105

[Close]

BLAST of Lsi02G005280 vs. NCBI nr
Match: XP_011652290.1 (protein MHF1 homolog isoform X1 [Cucumis sativus] >XP_011652296.1 protein MHF1 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-47
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           METGMEEDDSASELLRDRFRLS+ISIAEAEA +SGMEISEPVMTCVADLAFKYTTEQLAK
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTTEQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQ 128
           DLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDLKTKEPQ
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQ 106

[Close]

BLAST of Lsi02G005280 vs. NCBI nr
Match: XP_038894698.1 (protein MHF1 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-46
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           M+TG+EED SASELLRDRFRLSTISIAEAEA RSGMEISEPVMTCVADLAFKYTTEQLAK
Sbjct: 1   MKTGIEEDGSASELLRDRFRLSTISIAEAEANRSGMEISEPVMTCVADLAFKYTTEQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQ 128
           DLELFVQHAGRKSVNTEDVILSAHRNEHL+AILTSICNDLKTKEPQ
Sbjct: 61  DLELFVQHAGRKSVNTEDVILSAHRNEHLSAILTSICNDLKTKEPQ 106

[Close]

BLAST of Lsi02G005280 vs. NCBI nr
Match: XP_008440142.1 (PREDICTED: centromere protein S isoform X1 [Cucumis melo] >KAA0055356.1 centromere protein S isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-45
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           MET MEEDDSASELLRDRFRLSTISIAEAEA +SGMEISEPVMTCVADLAFK+TTEQLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQ 128
           DLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDLK KEPQ
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQ 106

[Close]

BLAST of Lsi02G005280 vs. NCBI nr
Match: XP_022137214.1 (protein MHF1 homolog [Momordica charantia] >XP_022137215.1 protein MHF1 homolog [Momordica charantia])

HSP 1 Score: 191.8 bits (486), Expect = 4.3e-45
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           METG EEDD+A+ELL DRFRLSTISIAEAEAKR+GMEISEPVMTCVA+LAFKYTTEQLAK
Sbjct: 1   METGREEDDTATELLSDRFRLSTISIAEAEAKRNGMEISEPVMTCVAELAFKYTTEQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQVNK 131
           DLELF QHAGRKSVNTEDVILSAHRNEHLAA LTS CNDLKTKEPQ  +
Sbjct: 61  DLELFAQHAGRKSVNTEDVILSAHRNEHLAASLTSFCNDLKTKEPQTER 109

[Close]

BLAST of Lsi02G005280 vs. NCBI nr
Match: XP_004154006.1 (protein MHF1 homolog isoform X2 [Cucumis sativus] >XP_004154007.1 protein MHF1 homolog isoform X2 [Cucumis sativus] >KGN64440.1 hypothetical protein Csa_013391 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 22  METGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAK 81
           METGMEEDDSASELLRDRFRLS+ISIAEAEA +SGMEISEPVMTCVADLAFKY T+QLAK
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60

Query: 82  DLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQ 128
           DLELF QHAGRKSVNTEDVIL+AHRNEHLAAILTSICNDLKTKEPQ
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQ 105

[Close]

BLAST of Lsi02G005280 vs. TAIR 10
Match: AT5G50930.1 (Histone superfamily protein )

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-34
Identity = 77/131 (58.78%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 8   PNAVNCESRSLCSAMETGME-----------EDDSASELLRDRFRLSTISIAEAEAKRSG 67
           P     +  S C AM+ G E           E+ S  +L+RDRFRLS ISIAEAEAK++G
Sbjct: 85  PTITQAKKPSYCFAMDVGGEDISDLQVDQIVEEYSMDDLIRDRFRLSAISIAEAEAKKNG 144

Query: 68  MEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTS 127
           MEI  PV+ CVADLAFKY  E +AKDLELF  HAGRK VN +DV+LSAHRN++LAA L S
Sbjct: 145 MEIGGPVVACVADLAFKY-AENVAKDLELFAHHAGRKVVNMDDVVLSAHRNDNLAASLRS 204

The following BLAST results are available for this feature:

BLAST of Lsi02G005280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FI55	6.6e-33	58.78	Protein MHF1 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF1 PE=3 SV=1	[more]
Q6NRI8	3.4e-05	28.95	Centromere protein S OS=Xenopus laevis OX=8355 GN=cenps PE=2 SV=1	[more]
Q8N2Z9	7.6e-05	32.26	Centromere protein S OS=Homo sapiens OX=9606 GN=CENPS PE=1 SV=1	[more]
Q2TBR7	1.0e-04	34.67	Centromere protein S OS=Bos taurus OX=9913 GN=CENPS PE=2 SV=1	[more]
O74807	2.9e-04	32.65	Inner kinetochore subunit mhf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Lsi02G005280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UM53	5.4e-46	93.40	Centromere protein S isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3B159	5.4e-46	93.40	centromere protein S isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484694 PE=3 SV=...	[more]
A0A6J1C623	2.1e-45	88.99	protein MHF1 homolog OS=Momordica charantia OX=3673 GN=LOC111008732 PE=3 SV=1	[more]
A0A0A0LR97	6.0e-45	93.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051770 PE=3 SV=1	[more]
A0A5D3BHQ8	1.9e-43	91.51	Centromere protein S isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Lsi02G005280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652290.1	3.5e-47	95.28	protein MHF1 homolog isoform X1 [Cucumis sativus] >XP_011652296.1 protein MHF1 h...	[more]
XP_038894698.1	1.0e-46	95.28	protein MHF1 homolog isoform X1 [Benincasa hispida]	[more]
XP_008440142.1	1.1e-45	93.40	PREDICTED: centromere protein S isoform X1 [Cucumis melo] >KAA0055356.1 centrome...	[more]
XP_022137214.1	4.3e-45	88.99	protein MHF1 homolog [Momordica charantia] >XP_022137215.1 protein MHF1 homolog ...	[more]
XP_004154006.1	1.2e-44	93.40	protein MHF1 homolog isoform X2 [Cucumis sativus] >XP_004154007.1 protein MHF1 h...	[more]

BLAST of Lsi02G005280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50930.1	4.7e-34	58.78	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 18..130 e-value: 9.9E-28 score: 98.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 55..110
IPR029003	CENP-S/Mhf1	PFAM	PF15630	CENP-S	coord: 36..110 e-value: 7.5E-16 score: 58.3
None	No IPR available	PANTHER	PTHR22980:SF0	CENTROMERE PROTEIN S	coord: 25..131
None	No IPR available	PANTHER	PTHR22980	CORTISTATIN	coord: 25..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G005280.1	Lsi02G005280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007129	homologous chromosome pairing at meiosis
biological_process	GO:0036297	interstrand cross-link repair
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0031297	replication fork processing
biological_process	GO:0000712	resolution of meiotic recombination intermediates
cellular_component	GO:0071821	FANCM-MHF complex
cellular_component	GO:0043240	Fanconi anaemia nuclear complex
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046982	protein heterodimerization activity