Lsi02G005220 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G005220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein TAPETUM DETERMINANT 1-like
Locationchr02: 4474111 .. 4476111 (+)
RNA-Seq ExpressionLsi02G005220
SyntenyLsi02G005220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCAGATCTGGATATTATGAACTCGAGTCCACCGAGTTTCCTTCGGTTAGGTTTGAACAGCACAATAGTTGGCCCTCATCGGAAGCTTCTCCTCACTAGTAAGTTTATGATATTTGATTTAATCGTGGTTCGTAAATGTTACAACAAATTCGTTAACGGAGGATTCGTTATTTTTTTTCCGAGTTTGTTGTGCAGATTCTTTTTGTTTTTGTTTTAAATATCTGTTTGATTTTGGAATTATGATCTCGGGGTTGGGGGAAGGGAGAGATTGGGTACTCAATTGCTTAAATGGTTGATTTGGTGTCAGAATTGCACGCCCATCCATTCTTAGTAATGAAGCTAAGGCGCACCTTTTGCTAGGTAGGTTTTCCAGCCCTTCTTTTAGCCCTTTAACCTATATGGCCTTTCTGTAGCTGTTTTTGGAGAAATCTTCTTTAATTGATCCCATATACCCACCAGGCTTTCTTCCTTTTTCTGTCCACAATTCATTGATTACATAAAAGCAACCTTTAGCCCGAAAGCGCGGAGCATTATAATGCCTTTCTCCGTTTTAGCTTTGTAGCTTCTAATTGATTCATTGCTTTGACAAGAAAAGCTCTACCGTTGAGTGTGTGTATTATAAAATTATATATAACGATTAGCTTATGCGTGGACTCCCTTTAGTGGGATGGTTGGGGGTACATTTTTATTAGTTTTAAATTTTCATATGTTTGTAATGGACGTAATTTTGAATTTTAAATTTTGTTATGTCTAACAAATGGACTGAAATTTGATAATGCTGCCGTGGATTTTTCTTTTTCAGACTCTCTTTTCTCTTTACTTGAATTTGCTTTATCTTTTATAATTGCTTATTTATGCTTTCTCAACACATCCTTTATGAATTCCAGAAAGTGTAGTTTGTGTGTCTGTAGACCTTTTTCCCATTGGTGGGTCGATATTTATTTATAAGAGTAATGTTTGCACGTGGGTGGTGCCTTGAACAATGCCCTATATACGATGCTAACGTATGACGTCGACCTGTTTGTTTCTTTATTTGAATGTGCTTTTAGAAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACTAAATCAGACATTGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATCTATGGTATACACTTCAAATGTGGTTGGTTTAGCTCAGCCCACCTCATCAATCCCAGAGTCTTCAAGCGTCTACGTTATGACGACTGCCTCGTAAACGATGGCAAGCCTCTTGTCTACGGCGGGACACTCTCATTCCAATATGCAAACACTTATCCATACCCGCTTTCAGTCTCCTCAGTTGTCTGCAACTGAAACTACATGCGCCAAACCAATTAGGAGACGCTCATATGAAGCACTTGAAGCAGCAGCAGGTACTTTAGTCGATTACTGATTGACAATGGCGCCCCCCCACCTGCCTTTTCTTGTCCCTTCTTTTCAGTTTTTTGGGTTCTGCTTTTGCTTTATATGTGTGTGGCCTGTTAGATTGGTTGTTTTCAATTTCTGTTCCTAGGAGTTTTTTCTTTCTTTCTAGAGAGGTCTGATTTTTACTGTCGTCTCGAGGTTGGAGGGGTAAGGTTTGTGGTTTAATAATGGTCATTGAACCAACTTTGCATACACATATATAGATGGTGAGTTAGGCAAGAAATGATAGAAAACTACTTCATTTTGATATTTTTTTTTTGGGTTGTGTGAGATAGGCATGGAGGGTAGGAAGGCCAAGTGTATATATACAGTTATATAGAACTGTGTTAGTTTGACAAGTTCATGAGATTTACAGCCATTATATGCCAGAGTAGCTCCACTTGTTCGTTTGCTTACCTAATTAATGACCCTCTTAATATTTCACTCCCTTTCCCCAATCTCTCTCTCACGCAGAACACATTTTGTAGGCCATGGTGTATTAATATAGAA

mRNA sequence

ATGATTGCAGATCTGGATATTATGAACTCGAGTCCACCGAGTTTCCTTCGGTTAGGTTTGAACAGCACAATAGTTGGCCCTCATCGGAAGCTTCTCCTCACTAAAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACTAAATCAGACATTGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATCTATGGTATACACTTCAAATGTGGTTGGTTTAGCTCAGCCCACCTCATCAATCCCAGAGTCTTCAAGCGTCTACGTTATGACGACTGCCTCGTAAACGATGGCAAGCCTCTTGTCTACGGCGGGACACTCTCATTCCAATATGCAAACACTTATCCATACCCGCTTTCAGTCTCCTCAGTTGTCTGCAACTGAAACTACATGCGCCAAACCAATTAGGAGACGCTCATATGAAGCACTTGAAGCAGCAGCAGGTACTTTAGTCGATTACTGATTGACAATGGCGCCCCCCCACCTGCCTTTTCTTGTCCCTTCTTTTCAGTTTTTTGGGTTCTGCTTTTGCTTTATATGTGTGTGGCCTGTTAGATTGGTTGTTTTCAATTTCTGTTCCTAGGAGTTTTTTCTTTCTTTCTAGAGAGGTCTGATTTTTACTGTCGTCTCGAGGTTGGAGGGGTAAGGTTTGTGGTTTAATAATGGTCATTGAACCAACTTTGCATACACATATATAGATGGTGAGTTAGGCAAGAAATGATAGAAAACTACTTCATTTTGATATTTTTTTTTTGGGTTGTGTGAGATAGGCATGGAGGGTAGGAAGGCCAAGTGTATATATACAGTTATATAGAACTGTGTTAGTTTGACAAGTTCATGAGATTTACAGCCATTATATGCCAGAGTAGCTCCACTTGTTCGTTTGCTTACCTAATTAATGACCCTCTTAATATTTCACTCCCTTTCCCCAATCTCTCTCTCACGCAGAACACATTTTGTAGGCCATGGTGTATTAATATAGAA

Coding sequence (CDS)

ATGATTGCAGATCTGGATATTATGAACTCGAGTCCACCGAGTTTCCTTCGGTTAGGTTTGAACAGCACAATAGTTGGCCCTCATCGGAAGCTTCTCCTCACTAAAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACTAAATCAGACATTGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATCTATGGTATACACTTCAAATGTGGTTGGTTTAGCTCAGCCCACCTCATCAATCCCAGAGTCTTCAAGCGTCTACGTTATGACGACTGCCTCGTAAACGATGGCAAGCCTCTTGTCTACGGCGGGACACTCTCATTCCAATATGCAAACACTTATCCATACCCGCTTTCAGTCTCCTCAGTTGTCTGCAACTGA

Protein sequence

MIADLDIMNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCN
Homology
[Close]
BLAST of Lsi02G005220 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-39
Identity = 78/126 (61.90%), Postives = 91/126 (72.22%), Query Frame = 0 

Query: 28  HRKLLLTKEATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 87
           HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMS 110

Query: 88  GCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 147
           GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G TLSF YANT+PY LS
Sbjct: 111 GCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 170

Query: 148 VSSVVC 149
           V+ V C
Sbjct: 171 VAFVTC 175

[Close]
BLAST of Lsi02G005220 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-38
Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 0 

Query: 14  SFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYT 73
           SF+ +  N T +   RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YT
Sbjct: 48  SFVSINENRTALS--RKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYT 107

Query: 74  VEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQY 133
           VE+ N+CV+ C I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQY
Sbjct: 108 VEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQY 167

Query: 134 ANTYPYPLSVSSVVC 149
           AN++ YPLSV+SV C
Sbjct: 168 ANSFSYPLSVASVSC 178

[Close]
BLAST of Lsi02G005220 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 54  DIVINQGPTAPLPTGIPTYTVEVVNACVTG------CEIYGIHFKCGWFSSAHLINPRVF 113
           DI I QG   PLP+G+P YTV+V+N C  G      C I GIH +CGWFSS  L++PRVF
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 114 KRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 149
           +RL +DDCL+NDG+PL+ G T+SF+Y N++PY LSVS   C
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

[Close]
BLAST of Lsi02G005220 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-23
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 0 

Query: 44  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLIN 103
           R+  + C++ ++V+ Q     LP+GIPTY+VE++N C T C +Y +H  CG F+SA L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 104 PRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 149
           P  F+R+ ++DCLV  G  L     +SFQY+N++ YPL+V++V C
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]
BLAST of Lsi02G005220 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.4e-05
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 72  YTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTL 131
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 132 SFQYANTYPYPL 142
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]
BLAST of Lsi02G005220 vs. ExPASy TrEMBL
Match: A0A6J1C840 (protein TAPETUM DETERMINANT 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009090 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.6e-77
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0 

Query: 1   MIADLDI----MNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIV 60
           ++ DLDI    MNSSPPS+L LGLN+TIV PHRKLLLTKEATIEEPTRIWGEKCTKSDIV
Sbjct: 33  LLTDLDIIGSFMNSSPPSYLPLGLNTTIVAPHRKLLLTKEATIEEPTRIWGEKCTKSDIV 92

Query: 61  INQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 120
           INQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRLRYDDCL
Sbjct: 93  INQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 152

Query: 121 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCN 150
           VNDGKPLVYGGTLSFQYANT+PYPLSVSSVVC+
Sbjct: 153 VNDGKPLVYGGTLSFQYANTFPYPLSVSSVVCS 185

[Close]
BLAST of Lsi02G005220 vs. ExPASy TrEMBL
Match: A0A6J1EDD3 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431507 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.9e-76
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0 

Query: 1   MIADLDI----MNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIV 60
           ++ DLDI    M+SSPPSFLRLGLNSTI  PHRKLLLT+EATIEEPTRIWGEKCTKSDIV
Sbjct: 28  ILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIV 87

Query: 61  INQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 120
           INQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRL YDDCL
Sbjct: 88  INQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCL 147

Query: 121 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 149
           VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC
Sbjct: 148 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 179

[Close]
BLAST of Lsi02G005220 vs. ExPASy TrEMBL
Match: A0A1S3B0P8 (protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 135/148 (91.22%), Postives = 142/148 (95.95%), Query Frame = 0 

Query: 1   MIADLDIMNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQG 60
           ++ D +IM+SSPPSFL L LN+T V PHRKLLLT+EATIEEPTRIWGEKCTKSDIVINQG
Sbjct: 34  VLTDSNIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQG 93

Query: 61  PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG 120
           PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG
Sbjct: 94  PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG 153

Query: 121 KPLVYGGTLSFQYANTYPYPLSVSSVVC 149
           KPLVYGGTLSFQYANTYPYPLSVSSV+C
Sbjct: 154 KPLVYGGTLSFQYANTYPYPLSVSSVLC 181

[Close]
BLAST of Lsi02G005220 vs. ExPASy TrEMBL
Match: A0A5A7UPF3 (Protein TAPETUM DETERMINANT 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001940 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 135/148 (91.22%), Postives = 142/148 (95.95%), Query Frame = 0 

Query: 1   MIADLDIMNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQG 60
           ++ D +IM+SSPPSFL L LN+T V PHRKLLLT+EATIEEPTRIWGEKCTKSDIVINQG
Sbjct: 34  VLTDSNIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQG 93

Query: 61  PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG 120
           PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG
Sbjct: 94  PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG 153

Query: 121 KPLVYGGTLSFQYANTYPYPLSVSSVVC 149
           KPLVYGGTLSFQYANTYPYPLSVSSV+C
Sbjct: 154 KPLVYGGTLSFQYANTYPYPLSVSSVLC 181

[Close]
BLAST of Lsi02G005220 vs. ExPASy TrEMBL
Match: A0A0A0LUG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.5e-75
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 0 

Query: 1   MIADLDIMNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQG 60
           ++ D +IM+S PPSFL L LN+T V PHRKLLLT+EATIEEPTRIWGEKCTKSDIVINQG
Sbjct: 34  ILTDPNIMDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQG 93

Query: 61  PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG 120
           PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG
Sbjct: 94  PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG 153

Query: 121 KPLVYGGTLSFQYANTYPYPLSVSSVVC 149
           KPLVYGGTLSFQYANTYPYPLSVSSV+C
Sbjct: 154 KPLVYGGTLSFQYANTYPYPLSVSSVLC 181

[Close]
BLAST of Lsi02G005220 vs. NCBI nr
Match: XP_038893959.1 (protein TAPETUM DETERMINANT 1-like [Benincasa hispida] >XP_038893960.1 protein TAPETUM DETERMINANT 1-like [Benincasa hispida] >XP_038893961.1 protein TAPETUM DETERMINANT 1-like [Benincasa hispida] >XP_038893962.1 protein TAPETUM DETERMINANT 1-like [Benincasa hispida])

HSP 1 Score: 303.9 bits (777), Expect = 7.6e-79
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 2   IADLDIMNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQGP 61
           + DLDIMNSSPPSFLRLGLN+TIV PHRKLLLT++ATIEEPTRIWGEKCTKSDIVINQGP
Sbjct: 25  LTDLDIMNSSPPSFLRLGLNTTIVAPHRKLLLTRQATIEEPTRIWGEKCTKSDIVINQGP 84

Query: 62  TAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGK 121
           TAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGK
Sbjct: 85  TAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGK 144

Query: 122 PLVYGGTLSFQYANTYPYPLSVSSVVCN 150
           PLVYGGTLSFQYANT+PYPLSVSSV CN
Sbjct: 145 PLVYGGTLSFQYANTFPYPLSVSSVACN 172

[Close]
BLAST of Lsi02G005220 vs. NCBI nr
Match: XP_022137731.1 (protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137732.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137733.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137734.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137735.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0 

Query: 1   MIADLDI----MNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIV 60
           ++ DLDI    MNSSPPS+L LGLN+TIV PHRKLLLTKEATIEEPTRIWGEKCTKSDIV
Sbjct: 33  LLTDLDIIGSFMNSSPPSYLPLGLNTTIVAPHRKLLLTKEATIEEPTRIWGEKCTKSDIV 92

Query: 61  INQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 120
           INQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRLRYDDCL
Sbjct: 93  INQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 152

Query: 121 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCN 150
           VNDGKPLVYGGTLSFQYANT+PYPLSVSSVVC+
Sbjct: 153 VNDGKPLVYGGTLSFQYANTFPYPLSVSSVVCS 185

[Close]
BLAST of Lsi02G005220 vs. NCBI nr
Match: XP_022923940.1 (protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923941.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923942.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923943.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >KAG6584166.1 Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 294.3 bits (752), Expect = 6.0e-76
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0 

Query: 1   MIADLDI----MNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIV 60
           ++ DLDI    M+SSPPSFLRLGLNSTI  PHRKLLLT+EATIEEPTRIWGEKCTKSDIV
Sbjct: 28  ILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIV 87

Query: 61  INQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 120
           INQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRL YDDCL
Sbjct: 88  INQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCL 147

Query: 121 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 149
           VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC
Sbjct: 148 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 179

[Close]
BLAST of Lsi02G005220 vs. NCBI nr
Match: KAG7019756.1 (Protein TAPETUM DETERMINANT 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.3 bits (752), Expect = 6.0e-76
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0 

Query: 1   MIADLDI----MNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIV 60
           ++ DLDI    M+SSPPSFLRLGLNSTI  PHRKLLLT+EATIEEPTRIWGEKCTKSDIV
Sbjct: 66  ILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIV 125

Query: 61  INQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 120
           INQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRL YDDCL
Sbjct: 126 INQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCL 185

Query: 121 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 149
           VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC
Sbjct: 186 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 217

[Close]
BLAST of Lsi02G005220 vs. NCBI nr
Match: XP_008439976.1 (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439984.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439993.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008440012.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >KAA0055349.1 protein TAPETUM DETERMINANT 1 [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 135/148 (91.22%), Postives = 142/148 (95.95%), Query Frame = 0 

Query: 1   MIADLDIMNSSPPSFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQG 60
           ++ D +IM+SSPPSFL L LN+T V PHRKLLLT+EATIEEPTRIWGEKCTKSDIVINQG
Sbjct: 34  VLTDSNIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQG 93

Query: 61  PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG 120
           PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG
Sbjct: 94  PTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDG 153

Query: 121 KPLVYGGTLSFQYANTYPYPLSVSSVVC 149
           KPLVYGGTLSFQYANTYPYPLSVSSV+C
Sbjct: 154 KPLVYGGTLSFQYANTYPYPLSVSSVLC 181

[Close]
BLAST of Lsi02G005220 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 164.1 bits (414), Expect = 8.7e-41
Identity = 78/126 (61.90%), Postives = 91/126 (72.22%), Query Frame = 0 

Query: 28  HRKLLLTKEATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 87
           HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMS 110

Query: 88  GCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 147
           GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G TLSF YANT+PY LS
Sbjct: 111 GCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 170

Query: 148 VSSVVC 149
           V+ V C
Sbjct: 171 VAFVTC 175

[Close]
BLAST of Lsi02G005220 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-39
Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 0 

Query: 14  SFLRLGLNSTIVGPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYT 73
           SF+ +  N T +   RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YT
Sbjct: 48  SFVSINENRTALS--RKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYT 107

Query: 74  VEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQY 133
           VE+ N+CV+ C I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQY
Sbjct: 108 VEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQY 167

Query: 134 ANTYPYPLSVSSVVC 149
           AN++ YPLSV+SV C
Sbjct: 168 ANSFSYPLSVASVSC 178

[Close]
BLAST of Lsi02G005220 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-06
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 72  YTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTL 131
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 132 SFQYANTYPYPL 142
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

The following BLAST results are available for this feature:
BLAST of Lsi02G005220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6TLJ21.2e-3961.90Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1[more]
Q1G3T13.0e-3857.04TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1[more]
Q2QR542.0e-2956.44TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S... [more]
Q8S6P94.7e-2342.86TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S... [more]
A8MS784.4e-0538.89Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P... [more]
BLAST of Lsi02G005220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C8407.6e-7790.85protein TAPETUM DETERMINANT 1-like isoform X1 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1EDD32.9e-7691.45protein TAPETUM DETERMINANT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431507... [more]
A0A1S3B0P81.1e-7591.22protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1[more]
A0A5A7UPF31.1e-7591.22Protein TAPETUM DETERMINANT 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A0A0LUG95.5e-7590.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1[more]
BLAST of Lsi02G005220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038893959.17.6e-7993.92protein TAPETUM DETERMINANT 1-like [Benincasa hispida] >XP_038893960.1 protein T... [more]
XP_022137731.11.6e-7690.85protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_02213773... [more]
XP_022923940.16.0e-7691.45protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923941.1 protein ... [more]
KAG7019756.16.0e-7691.45Protein TAPETUM DETERMINANT 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_008439976.12.3e-7591.22PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439984.1 PREDICTE... [more]
BLAST of Lsi02G005220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24972.18.7e-4161.90tapetum determinant 1 [more]
AT1G32583.12.1e-3957.04FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G05835.13.1e-0638.89PHD finger protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040361Tapetum determinant 1PANTHERPTHR33184PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATEDcoord: 19..148
NoneNo IPR availablePANTHERPTHR33184:SF67PROTEIN TAPETUM DETERMINANT 1coord: 19..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G005220.1Lsi02G005220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001709 cell fate determination
cellular_component GO:0016021 integral component of membrane