Lsi02G004780 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G004780
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr02: 3979837 .. 3980052 (-)
RNA-Seq Expression	Lsi02G004780
Synteny	Lsi02G004780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGCACCAGCAAGTTCAGCCGCCGCAGGCGGCGGTGACGGCGAAGCAAATCCAGTGCAATAAAGCTAAGTATCCGAAGTTCAAGAGAAGTAGCTCTGATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCCCCAATTTTAGCTCCGTCGCCGGCTGA

mRNA sequence

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGCACCAGCAAGTTCAGCCGCCGCAGGCGGCGGTGACGGCGAAGCAAATCCAGTGCAATAAAGCTAAGTATCCGAAGTTCAAGAGAAGTAGCTCTGATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCCCCAATTTTAGCTCCGTCGCCGGCTGA

Coding sequence (CDS)

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGCACCAGCAAGTTCAGCCGCCGCAGGCGGCGGTGACGGCGAAGCAAATCCAGTGCAATAAAGCTAAGTATCCGAAGTTCAAGAGAAGTAGCTCTGATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCCCCAATTTTAGCTCCGTCGCCGGCTGA

Protein sequence

MVSKVEETLRRKHQQVQPPQAAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLACIAFAPNFSSVAG

Homology

[Close]

BLAST of Lsi02G004780 vs. ExPASy TrEMBL
Match: A0A0A0LTS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.0e-20
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQVQPPQ-------AAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSA 60
          MVSKVEETLRRK+QQV PPQ       AA TAKQIQCNKAKYPKFKRSSS+VEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFA 64
          MLLLACIAFA
Sbjct: 61 MLLLACIAFA 70

[Close]

BLAST of Lsi02G004780 vs. ExPASy TrEMBL
Match: A0A7J0FYN8 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_16g0004460 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.0e-12
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQVQPPQAAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLACI 60
          MVSKVEE ++++ QQ Q  Q     KQ+QCNK K  KFKRSSS++EEDGASSA+LLLACI
Sbjct: 1  MVSKVEEAMKKRQQQEQHQQ----QKQMQCNKGKASKFKRSSSNLEEDGASSAILLLACI 60

Query: 61 AFAPN 66
          AFAPN
Sbjct: 61 AFAPN 61

[Close]

BLAST of Lsi02G004780 vs. ExPASy TrEMBL
Match: A0A4D6KYW9 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1293 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQVQ--PPQAAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLA 60
          MVSKVEE ++RK Q  Q    Q     KQIQCNK K  KFKRSSS++EEDGASSA+L LA
Sbjct: 1  MVSKVEEAMKRKKQMQQEGQNQQQQVQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFLA 60

Query: 61 CIAFAPNFS 68
          CIA AP+F+
Sbjct: 61 CIACAPSFA 69

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BLAST of Lsi02G004780 vs. ExPASy TrEMBL
Match: I1K083 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_05G045400 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQVQPP---QAAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLL 60
          MVSKVEE ++R ++Q+QP    Q     KQIQCNK K  KFKRSSS++EEDGASSA+L L
Sbjct: 1  MVSKVEEAMKR-NKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFL 60

Query: 61 ACIAFAPNFS 68
          ACIA+AP+++
Sbjct: 61 ACIAYAPSYA 69

[Close]

BLAST of Lsi02G004780 vs. ExPASy TrEMBL
Match: A0A445KJ74 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_011276 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQVQPP---QAAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLL 60
          MVSKVEE ++R ++Q+QP    Q     KQIQCNK K  KFKRSSS++EEDGASSA+L L
Sbjct: 1  MVSKVEEAMKR-NKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFL 60

Query: 61 ACIAFAPNFS 68
          ACIA+AP+++
Sbjct: 61 ACIAYAPSYA 69

[Close]

BLAST of Lsi02G004780 vs. NCBI nr
Match: KAG6584135.1 (hypothetical protein SDJN03_20067, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019725.1 hypothetical protein SDJN02_18688, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 6.3e-23
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQVQPPQ---AAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLL 60
          MVSKVEETLR KHQQVQPPQ   AA TAKQIQCNKAKYPKFKRS S+VEEDGASSAMLLL
Sbjct: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60

Query: 61 ACIAFAPNFSSVAG 72
          ACIAFAP+FS V G
Sbjct: 61 ACIAFAPDFSPVLG 74

[Close]

BLAST of Lsi02G004780 vs. NCBI nr
Match: KGN64384.1 (hypothetical protein Csa_013100 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQVQPPQ-------AAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSA 60
          MVSKVEETLRRK+QQV PPQ       AA TAKQIQCNKAKYPKFKRSSS+VEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFA 64
          MLLLACIAFA
Sbjct: 61 MLLLACIAFA 70

[Close]

BLAST of Lsi02G004780 vs. NCBI nr
Match: KAG7012298.1 (hypothetical protein SDJN02_25050, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 5.1e-17
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQVQPPQAA--VTAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLA 60
          MVSKVEE LRRK QQVQ P AA    AKQIQ NKAKYPKFKRSSSDV +DGASSA+LLLA
Sbjct: 1  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLA 60

Query: 61 CIAFAPNFSSVAG 72
          CIAF+P  S V+G
Sbjct: 61 CIAFSPASSPVSG 73

[Close]

BLAST of Lsi02G004780 vs. NCBI nr
Match: GFZ03822.1 (hypothetical protein Acr_16g0004460 [Actinidia rufa])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQVQPPQAAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLACI 60
          MVSKVEE ++++ QQ Q  Q     KQ+QCNK K  KFKRSSS++EEDGASSA+LLLACI
Sbjct: 1  MVSKVEEAMKKRQQQEQHQQ----QKQMQCNKGKASKFKRSSSNLEEDGASSAILLLACI 60

Query: 61 AFAPN 66
          AFAPN
Sbjct: 61 AFAPN 61

[Close]

BLAST of Lsi02G004780 vs. NCBI nr
Match: KAG2676094.1 (hypothetical protein I3760_12G035800 [Carya illinoinensis] >KAG6633270.1 hypothetical protein CIPAW_12G036300 [Carya illinoinensis] >KAG6683880.1 hypothetical protein I3842_12G034800 [Carya illinoinensis] >KAG7951991.1 hypothetical protein I3843_12G035700 [Carya illinoinensis])

HSP 1 Score: 76.6 bits (187), Expect = 9.4e-11
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1  MVSKVEETLRRKHQQ-VQPPQAAVTAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLAC 60
          MVSKVEE+++ K QQ  QP       KQ+QCNK K  KFKRSSS++EEDGASSA+LLLAC
Sbjct: 1  MVSKVEESMKGKQQQPQQPSHQQQLQKQMQCNKGKASKFKRSSSNLEEDGASSAILLLAC 60

Query: 61 IAFAPNFS 68
          IA AP+++
Sbjct: 61 IACAPSYA 68

[Close]

BLAST of Lsi02G004780 vs. TAIR 10
Match: AT5G50335.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 3.7e-05
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 30 CNKAKYPKFKRSSSDVEEDGASSAMLLLACIA 62
          CNK K  +FKRS+S+++ DGASSA+ LLACIA
Sbjct: 35 CNKEKSCRFKRSTSNLDNDGASSAIFLLACIA 66

The following BLAST results are available for this feature:

BLAST of Lsi02G004780 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G004780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTS0	7.0e-20	84.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1	[more]
A0A7J0FYN8	7.0e-12	67.69	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_16g0004460 PE=4 SV=1	[more]
A0A4D6KYW9	1.0e-10	63.77	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1293 PE=4 SV=1	[more]
I1K083	1.3e-10	61.43	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_05G045400 PE=4 SV=1	[more]
A0A445KJ74	1.3e-10	61.43	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_011276 PE=4 SV=1	[more]

BLAST of Lsi02G004780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584135.1	6.3e-23	86.49	hypothetical protein SDJN03_20067, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN64384.1	1.4e-19	84.29	hypothetical protein Csa_013100 [Cucumis sativus]	[more]
KAG7012298.1	5.1e-17	76.71	hypothetical protein SDJN02_25050, partial [Cucurbita argyrosperma subsp. argyro...	[more]
GFZ03822.1	1.4e-11	67.69	hypothetical protein Acr_16g0004460 [Actinidia rufa]	[more]
KAG2676094.1	9.4e-11	63.24	hypothetical protein I3760_12G035800 [Carya illinoinensis] >KAG6633270.1 hypothe...	[more]

BLAST of Lsi02G004780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50335.1	3.7e-05	65.63	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR38398	EXPRESSED PROTEIN	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G004780.1	Lsi02G004780.1	mRNA