Lsi02G004070 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G004070
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCopper amine oxidase 1-like
Locationchr02: 3434868 .. 3436353 (+)
RNA-Seq ExpressionLsi02G004070
SyntenyLsi02G004070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGTTTGAAAGAAATATCTGATGCAGAACAGGAATTAATGAATTACATTTATTTTTCCCTACTATTATTTACAAGGATCTAAATGATGGATTAATTTCAAACCAAATGGACAGATATTGAACAGAGAACTCCAACATAACTAAAGCAAAACCATTACCCCATCGATTGTCAGTGTTGTTCTGAGTCCCTATCGACACGATATTCAAGTTAAAATCACGTAATTCGTTTAAGCAATTTTATATTAGTAATCTTCTCATAAGGAATAAGTACTAGAAATATGACCATGATAAGAGACTTAGACACAACGTTGAACAAATTTTTTGCAGCTCTAATGATAATATTAGGACATCTTCGAATCAGCAGCAATGAATACTTTGCAAAGGAATAGTTGGGAAAAATTCAATTTACACCCCTAACTTTGTAGTTTTATCACAGGTTAATTGTATAAATTAAAGTCCTAAGCTTTTCACAAGTGTATTAATTAACCCCTAGCAAAACAAAGTTTAGGGTTGTAAATGGATACTTTTCCAAAATAGTTTTTTCCAAATCTCACATGGTTGAGGATGAAAATGAAGTAGATCTTATATAAATAACATCATCAAAACAAGTAAAAACAGCAGATCATTTAGGAGGAAAATTGCACTGCTTCCATGGAGACAATCAAGTTCTTTGTTAGTGAGCCGAGTAAGATCTAACAAGAATGCGAGTAGCATTCTCAAACGTTGGGGACTTTAATAATGATAGCAAAAGCCCATAAAACTATAGAAATTAACAATGTATAACATTCAAGAAAAATGATGATTCAAGAAACACATTCAAAATCGGACTGAGTTCAAAGTGAAGATAACTGAAACACAAAGTTTGATAACATTACTCCAATACTTCGAATAACGCCACAAGAAATATCAAAACTAATTTGGAAACAAAATCATAAACTAAAAGTTACCCAATAAACCTAAGCCGTAAGGACAACCGCACCACCATTCTCTTTGATCTTCTTCTCTGCAATTTTGGAGATGAGCTTGGCTTTCACAACGACGGGCTGGTTCTCAGGCAAAACCCCTTTCCCCAAAACTTTGAAGTACCCAAACTGGGTAACATCAATCAAAGGAACATTATCCTTAGAAGCCTTGTCCTTGACCTCCTGAGGGACGAGAGACCAGAGCTTGTCGACGTTTACAATGGGGCAATAGAATTTGTTACGGAGCTTGTGGAAGTACCTCATACCAACTTTACCGAAATAACCAGGATGGTATTTGTCGAAGAGGATTCTGTGATGGTGCATACCTCCGGCGTTACCACGACCACCAGGATGCTTGCGGTGCTTGCCGATACGACCATGGCCGGCGCTCACGTGACCGCGCTTCTTTCTGTTCTTCTTGAAGCGGGTCGTCATTTCGTCGGCGAGTGTAGGAGAATTAGGTTTTCAGAGTTGCAGGGAGCGGCGAGCGCGAGGAAGTGCAAATTAGGGTTTGATTGA

mRNA sequence

ATGGAGCATTACCCAATAAACCTAAGCCGTAAGGACAACCGCACCACCATTCTCTTTGATCTTCTTCTCTGCAATTTTGGAGATGAGCTTGGCTTTCACAACGACGGGCTGGTTCTCAGGCAAAACCCCTTTCCCCAAAACTTTGAAGTACCCAAACTGGGTAACATCAATCAAAGGAACATTATCCTTAGAAGCCTTGTCCTTGACCTCCTGAGGGACGAGAGACCAGAGCTTGTCGACGTTTACAATGGGGCAATAGAATTTGTTACGGAGCTTGTGGAAGTACCTCATACCAACTTTACCGAAATAACCAGGATGGTATTTGTCGAAGAGGATTCTGTGATGGTGCATACCTCCGGCGTTACCACGACCACCAGGATGCTTGCGGTGCTTGCCGATACGACCATGGCCGGCGCTCACGTGACCGCGCTTCTTTCTGTTCTTCTTGAAGCGGGTCGTCATTTCGTCGGCGAGTGTAGGAGAATTAGGTTTTCAGAGTTGCAGGGAGCGGCGAGCGCGAGGAAGTGCAAATTAGGGTTTGATTGA

Coding sequence (CDS)

ATGGAGCATTACCCAATAAACCTAAGCCGTAAGGACAACCGCACCACCATTCTCTTTGATCTTCTTCTCTGCAATTTTGGAGATGAGCTTGGCTTTCACAACGACGGGCTGGTTCTCAGGCAAAACCCCTTTCCCCAAAACTTTGAAGTACCCAAACTGGGTAACATCAATCAAAGGAACATTATCCTTAGAAGCCTTGTCCTTGACCTCCTGAGGGACGAGAGACCAGAGCTTGTCGACGTTTACAATGGGGCAATAGAATTTGTTACGGAGCTTGTGGAAGTACCTCATACCAACTTTACCGAAATAACCAGGATGGTATTTGTCGAAGAGGATTCTGTGATGGTGCATACCTCCGGCGTTACCACGACCACCAGGATGCTTGCGGTGCTTGCCGATACGACCATGGCCGGCGCTCACGTGACCGCGCTTCTTTCTGTTCTTCTTGAAGCGGGTCGTCATTTCGTCGGCGAGTGTAGGAGAATTAGGTTTTCAGAGTTGCAGGGAGCGGCGAGCGCGAGGAAGTGCAAATTAGGGTTTGATTGA

Protein sequence

MEHYPINLSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSLVLDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTRMLAVLADTTMAGAHVTALLSVLLEAGRHFVGECRRIRFSELQGAASARKCKLGFD
Homology
BLAST of Lsi02G004070 vs. ExPASy Swiss-Prot
Match: P53143 (Putative uncharacterized protein YGL102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YGL102C PE=5 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-12
Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 0

Query: 6   INLSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRS 65
           + LS + N TT   D      GDE  F +D   +  +   Q+  V    ++N  +  LRS
Sbjct: 1   MRLSDQFNNTTSSSDFFFSQLGDESSF-DDNWNIWNSTLTQDLTVTGCQSVNNWSSFLRS 60

Query: 66  ----LVLDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGV 125
               LV  +  D+ P+ V V +   E    LVEV HTN TEIT MVF+  +SV++ T+G 
Sbjct: 61  RFQVLVSLVFWDQCPQFVQVQDWLPEMSLLLVEVSHTNLTEITWMVFIHVNSVVMLTTGH 120

Query: 126 TTTTRMLAVLADTTMAG 139
           T+TT +L+VL DTT  G
Sbjct: 121 TSTTGVLSVLTDTTFTG 136

BLAST of Lsi02G004070 vs. ExPASy TrEMBL
Match: W9RN37 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027707 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.8e-38
Identity = 87/148 (58.78%), Postives = 116/148 (78.38%), Query Frame = 0

Query: 7   NLSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSL 66
           +L  +D+    L +LLL + GDELG  +D L+LRQ+ F QN EV +L +I++R+++L  L
Sbjct: 34  DLGGEDDGAAGLLNLLLGDLGDELGLDDDRLILRQDSFAQNLEVSELSDIDERDVVLGGL 93

Query: 67  VLDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTR 126
           VLDLLR+  PELVDV + A+EFVTELVE+PHT+  E+ R++ VEEDSV+VHT+GVT TT 
Sbjct: 94  VLDLLRNHGPELVDVDDRAVEFVTELVEIPHTDLAEVARVILVEEDSVVVHTTGVTATTG 153

Query: 127 MLAVLADTTMAGAHVTALLSVLLEAGRH 155
           +L VLAD++MAGAHV ALL VLLE+GRH
Sbjct: 154 VLPVLADSSMAGAHVPALLPVLLESGRH 181

BLAST of Lsi02G004070 vs. ExPASy TrEMBL
Match: A0A5D2GZF1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A04G182500v1 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 0

Query: 7   NLSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSL 66
           NLS + N TT L + L      +L   +  L+LRQN F ++F+VP+L +++ R+ IL  L
Sbjct: 12  NLSGEHNSTTSLLNFLFSGLRHQLSLDDHRLILRQNTFSEDFKVPELCHVDHRSGILGGL 71

Query: 67  VLDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTR 126
              +LRD+RPELVDV +GA+E VTE VEVPHTN TEITRMV VEED V+VH S VT T  
Sbjct: 72  GFHVLRDKRPELVDVDDGAMELVTEPVEVPHTNLTEITRMVLVEEDPVVVHASSVTATPG 131

Query: 127 MLAVLADTTMAGAHVTALLSVLLEAGRHF 156
           +L VL DTT+ GAH+ ALL+VLLEAG HF
Sbjct: 132 VLPVLPDTTVTGAHMAALLAVLLEAGCHF 160

BLAST of Lsi02G004070 vs. ExPASy TrEMBL
Match: A0A7N0T5V7 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.3e-32
Identity = 79/151 (52.32%), Postives = 108/151 (71.52%), Query Frame = 0

Query: 8   LSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSLV 67
           L  K +    L +LLL +FG++   H++GL  R++P PQ+ EVP+L +I+QR +I R LV
Sbjct: 23  LGSKHDSAASLLNLLLSSFGNQFRLHHNGLGCRKHPLPQDLEVPELRDIDQRKVIRRGLV 82

Query: 68  LDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTRM 127
           L LLR ERP+LVDV + A+E V +L+EV H +  E++ MV VEED+V+VH S VT  + M
Sbjct: 83  LHLLRHERPQLVDVDDRAVELVAKLMEVAHADLAEVSGMVLVEEDAVVVHASSVTAPSGM 142

Query: 128 LAVLADTTMAGAHVTALLSVLLEAGRHFVGE 159
           L VLADT +AGA V ALL+VL +AG H+VGE
Sbjct: 143 LTVLADTAVAGADVAALLTVLPKAGGHWVGE 173

BLAST of Lsi02G004070 vs. ExPASy TrEMBL
Match: A0A7N0U1I4 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 0

Query: 8   LSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSLV 67
           LS ++N    L DLLL   G++LG H++ L LRQ+P PQ+ EV +L ++++R + L  LV
Sbjct: 40  LSGENNGAASLLDLLLRGLGNKLGLHHNRLRLRQHPLPQHLEVSELRHVDERYVALGRLV 99

Query: 68  LDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTRM 127
           L LLR +RP+LV V + A+E V +LVEVPHT+ TE+T MV VE++ V+VH SGVT T+ M
Sbjct: 100 LHLLRHQRPQLVHVDDRAVELVPQLVEVPHTDLTEVTWMVLVEQNPVVVHASGVTPTSGM 159

Query: 128 LAVLADTTMAGAHVTALLSVLLEAGRHF 156
           L VL DT+M G HV +LL VL +  RHF
Sbjct: 160 LPVLPDTSMPGTHVASLLPVLAKPRRHF 187

BLAST of Lsi02G004070 vs. ExPASy TrEMBL
Match: A0A5D2VXZ0 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D02G188100v1 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.3e-25
Identity = 65/125 (52.00%), Postives = 89/125 (71.20%), Query Frame = 0

Query: 7   NLSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSL 66
           NLS + N TT LF+LLL + G +L  ++D L+L Q+ FPQ+ ++P+ G+++ R  I+  L
Sbjct: 11  NLSGEHNHTTSLFNLLLSSLGHQLSLNHDRLILGQHTFPQDLKIPESGHVDHRRRIVVGL 70

Query: 67  VLDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTR 126
            L +L DERPELVDV +GA++ V E VEVPHT+F EI R+V VEED V+VHTSGV +T  
Sbjct: 71  CLHVLWDERPELVDVDDGAVKLVAEFVEVPHTHFLEIPRVVLVEEDPVVVHTSGVFSTPG 130

Query: 127 MLAVL 132
            L  L
Sbjct: 131 CLRCL 135

BLAST of Lsi02G004070 vs. NCBI nr
Match: EXB82531.1 (hypothetical protein L484_027707 [Morus notabilis])

HSP 1 Score: 167.9 bits (424), Expect = 7.9e-38
Identity = 87/148 (58.78%), Postives = 116/148 (78.38%), Query Frame = 0

Query: 7   NLSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSL 66
           +L  +D+    L +LLL + GDELG  +D L+LRQ+ F QN EV +L +I++R+++L  L
Sbjct: 34  DLGGEDDGAAGLLNLLLGDLGDELGLDDDRLILRQDSFAQNLEVSELSDIDERDVVLGGL 93

Query: 67  VLDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTR 126
           VLDLLR+  PELVDV + A+EFVTELVE+PHT+  E+ R++ VEEDSV+VHT+GVT TT 
Sbjct: 94  VLDLLRNHGPELVDVDDRAVEFVTELVEIPHTDLAEVARVILVEEDSVVVHTTGVTATTG 153

Query: 127 MLAVLADTTMAGAHVTALLSVLLEAGRH 155
           +L VLAD++MAGAHV ALL VLLE+GRH
Sbjct: 154 VLPVLADSSMAGAHVPALLPVLLESGRH 181

BLAST of Lsi02G004070 vs. NCBI nr
Match: KAG8500153.1 (hypothetical protein CXB51_004461 [Gossypium anomalum])

HSP 1 Score: 155.2 bits (391), Expect = 5.3e-34
Identity = 85/149 (57.05%), Postives = 108/149 (72.48%), Query Frame = 0

Query: 7   NLSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSL 66
           NLS + N TT L + LL     +L   +  L+LRQN F ++F+VP+L +++ R+ IL  L
Sbjct: 12  NLSGEHNSTTSLLNFLLGGLRHQLSLDDHRLILRQNTFSEDFKVPELCHVDHRSRILGGL 71

Query: 67  VLDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTR 126
              +LRD+RPELVDV +GA+E VTE VEVPHTN TEITRMVFVEED V++H S VT T  
Sbjct: 72  GFHVLRDKRPELVDVDDGAMELVTEPVEVPHTNLTEITRMVFVEEDPVVMHASSVTATPG 131

Query: 127 MLAVLADTTMAGAHVTALLSVLLEAGRHF 156
           +L VL DTT+ GAH+ ALL+VLLEAG HF
Sbjct: 132 VLPVLPDTTVTGAHMAALLAVLLEAGCHF 160

BLAST of Lsi02G004070 vs. NCBI nr
Match: TYH23088.1 (hypothetical protein ES288_A04G182500v1 [Gossypium darwinii])

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-33
Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 0

Query: 7   NLSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSL 66
           NLS + N TT L + L      +L   +  L+LRQN F ++F+VP+L +++ R+ IL  L
Sbjct: 12  NLSGEHNSTTSLLNFLFSGLRHQLSLDDHRLILRQNTFSEDFKVPELCHVDHRSGILGGL 71

Query: 67  VLDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTR 126
              +LRD+RPELVDV +GA+E VTE VEVPHTN TEITRMV VEED V+VH S VT T  
Sbjct: 72  GFHVLRDKRPELVDVDDGAMELVTEPVEVPHTNLTEITRMVLVEEDPVVVHASSVTATPG 131

Query: 127 MLAVLADTTMAGAHVTALLSVLLEAGRHF 156
           +L VL DTT+ GAH+ ALL+VLLEAG HF
Sbjct: 132 VLPVLPDTTVTGAHMAALLAVLLEAGCHF 160

BLAST of Lsi02G004070 vs. NCBI nr
Match: KAG4163103.1 (hypothetical protein ERO13_D01G150701v2 [Gossypium hirsutum])

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-32
Identity = 79/149 (53.02%), Postives = 107/149 (71.81%), Query Frame = 0

Query: 7   NLSRKDNRTTILFDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSL 66
           NL  + N TT L +LL    G +L  ++D LVL QN   ++ +VP+LG+++ R  +L   
Sbjct: 14  NLGGEHNSTTSLLNLLFSCLGHQLSLNHDRLVLGQNTLSKDLKVPELGHVDHRRSVLVGF 73

Query: 67  VLDLLRDERPELVDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTR 126
            L +L DERPELVDV NGA++ V ELVEVPHT+FTEI R++FV+ED V+VH SGV+ T+R
Sbjct: 74  CLHVLWDERPELVDVDNGAVKLVAELVEVPHTDFTEIPRVIFVKEDPVVVHASGVSATSR 133

Query: 127 MLAVLADTTMAGAHVTALLSVLLEAGRHF 156
           ML +L +T++  A V ALL+VLLEAG HF
Sbjct: 134 MLPMLTNTSVTSADVAALLAVLLEAGCHF 162

BLAST of Lsi02G004070 vs. NCBI nr
Match: KAF3783033.1 (hypothetical protein EJ110_NYTH32983 [Nymphaea thermarum])

HSP 1 Score: 128.3 bits (321), Expect = 6.9e-26
Identity = 70/157 (44.59%), Postives = 103/157 (65.61%), Query Frame = 0

Query: 19  FDLLLCNFGDELGFHNDGLVLRQNPFPQNFEVPKLGNINQRNIILRSLVLDLLRDERPEL 78
           F L     G +L   N+GL   + P  ++ EVP+LG++N+  ++ R L+L + R+ERP+L
Sbjct: 27  FKLQPGQLGHDLCLDNNGLRWGKVPLAKHLEVPELGDVNEGGVVCRRLLLGVRREERPKL 86

Query: 79  VDVYNGAIEFVTELVEVPHTNFTEITRMVFVEEDSVMVHTSGVTTTTRMLAVLADTTMAG 138
           VDV  GA+E V +LV+VPHT+  E+ R+V VEED V+V  + +T TT +L VLADT++ G
Sbjct: 87  VDVDGGAVELVPQLVKVPHTHLPEVPRVVLVEEDPVVVEATSITATTGVLPVLADTSVTG 146

Query: 139 AHVTALLSVLLEAGRHFVGECRRIRFSELQGAASARK 176
           A++T+LL VLLE GRH +    R R   + G  + RK
Sbjct: 147 ANMTSLLPVLLEPGRHLLRRRGRARGEGIGGRRTLRK 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P531437.7e-1237.96Putative uncharacterized protein YGL102C OS=Saccharomyces cerevisiae (strain ATC... [more]
Match NameE-valueIdentityDescription
W9RN373.8e-3858.78Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027707 PE=4 SV=1[more]
A0A5D2GZF11.3e-3356.38Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A04G182500v1 PE=... [more]
A0A7N0T5V75.3e-3252.32Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A7N0U1I41.7e-3052.03Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A5D2VXZ08.3e-2552.00Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D02G188100v1 P... [more]
Match NameE-valueIdentityDescription
EXB82531.17.9e-3858.78hypothetical protein L484_027707 [Morus notabilis][more]
KAG8500153.15.3e-3457.05hypothetical protein CXB51_004461 [Gossypium anomalum][more]
TYH23088.12.6e-3356.38hypothetical protein ES288_A04G182500v1 [Gossypium darwinii][more]
KAG4163103.13.8e-3253.02hypothetical protein ERO13_D01G150701v2 [Gossypium hirsutum][more]
KAF3783033.16.9e-2644.59hypothetical protein EJ110_NYTH32983 [Nymphaea thermarum][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G004070.1Lsi02G004070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0022857 transmembrane transporter activity