Lsi02G000530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G000530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	UPF0426 protein At1g28150, chloroplastic
Location	chr02: 504581 .. 507080 (-)
RNA-Seq Expression	Lsi02G000530
Synteny	Lsi02G000530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTCAAATTAAATCAAATGTAGATAAAAACATGGGCATGTTCCTAGTTTTCGAAATGTTTGGTCAATTGCAGGAAGAAAACAAGGCGAATTAAAGCCATTACCTCAATTGGAACGCAAATATCTTCATCCTCTTCTTCCATCATCCTTCAATCAATCAGAAACAGCTCCATTAGCATCATCAGAGATTACCAATGGCCGCTCTTCTTCTTCATTCCTCTTCGACTGCGAGCGTTCTGGTATGTCCATCTCTACTCTTTAATTACTTTCGCTCTTTTCTATAATTTCCCTTTTATTTCTCTTCTTCGATGTTATTGATTTTCCTCTTTGATTCTATTGAAAGTTTGGAGGAGTGGGGAAACTAAAGGGACGGAATCATCATTCGATTTTATCATCCAACAAACCTATGCGCGGTAACTATCTTAGTCTCGGCTGCAATAATTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGTTGAGGATCCCGTTATCAAAGAAGCTCTTAAGGTATTCTATTAACTCAATCCCTTCCTGAGTTTTTTCTGTTGTGTTGATTCGCCTAGTTTCTACTTCGATTGAGGTATTGATTGCTGAATATGTTCAAAATATGGAGGATTTAATTAGTTTCCCATCGTATTCCCATAGCACTTAAGAGACAGATTATCTTCGAGTAGAGTTACATACATGGTCGACAAGTGCGAGTTAAGATAATATGGATGGATGGATCTAAGATTTTTCTAGTCATGTCATCTTGAAATTATTAGAACTTCGTAGGACCGTAGGGAAGATTTTCACTGTATAGGAAACCCAATTTAACCATTCTATCTCTCTGATAACTAAAGACTGCATAACATAAGTATTATTCAGTCAACTCTTATGATCTGCAAATAACAATCTCGAATTAACTTCAAAGGAGAAACATTATATGCCTTTATGATCTGGAAGGCTATTTGTTGAGGAAAATGTACGCCTAGAGGATATCTTTAGTTGGCTTTACCTTTTCACAAATCCTTTAAACCATGCTTTCACATTTATGAATCTATATTGGTAACCGTAGAACTAAAATCCTACCAGAAGAAGATAATAAGACAGTTGTTGTATTGGTTTCTTAGTTTACTGCTAGTCTACTACCACAGTGACAGAGCATTCACAGGTGCAGCTAAAAGGTGTACACTACTCTGGCTACTTTTCTCCGAGAAAAAGTCTCCTCTTCTACACTTCTACTTCATTCATTTCATGTTATACAAAAGACTGAAACTAAACACTTTTTACCTTACACCTGCCCTGCTATGATTTTTCTCTCGATTAGAATTCTGCCCATCAATGAAATCTAAGTAGGAACTTTCCCAATGGATGACCACAGGATTGATGAGTCCCGTTCTGGCTGAAAGAATCCAGCATTGGTGTTGCAACACATTTAATTTTGCCTGAAGCCTGATATATCAGGACACTAATTGAATTGTTTGAGTTTGGGAAATGTTTATTCTTCTTCTTGTTTGGTAAGATTGAAATTTGCTAGAAAGCTTACTGACATCTCATCTCCAAGACCCGTCATCTTCATCATGTTGCATTCGCTTTCACACATGATATTGTTTAACTGACCGTTTGGCACTAGGCTCACTTGAGATACCAGTCGTGTTTGGTTTGATTTTTTTAAGTGCTTAAAAACTTTAAACACCTAGAAAGTCAAAAGTTACTGCTATGGAGACTGCTGAAGCCAAAAGTTAAACATCACTTCATTATGCCAAATACATTTCCATAGAATTGAAGCAGTCCCAATTACTTCTTGCGACTAAATATTTGAGAGTTTGTTGGTTTTTCATCATTCATAACTAAATAAGCAATCCCAGTTCAAACTCTTACTGTTGCATGAGCGTTATGATTCTTTGTTGGTACGGTTCTTTCTGGACTATATAGAATAAGATGTTAAGGCTTCGTTAGCTGGGAAGCATGAATTCTTTAGATGAAAACACTCACTTCAATAACTTTGATTTTCCCTTGTGGCTTTTGGAACTGCTCTTTTATAGTTCATATCAAAGATATCGAGTCAAAGTAATTTCAATTGTTGTAGGAGCCAGTTGCCTTCGCAGGTGGGCTATTTGCTGGCCTTCTAAGGCTTGATTTGAACGAAGATCCATTGAAGGAATGGGTTAAGAAGACAGTGGAATCAGCTGGACTCACGGAAGAAGTTGATACTCAAGAATCTGTACAAGAGGATGGCCCGACCGCGATCGAGATTGAATGATCCCATCAATGGACCTAACCTCTTACAGTTCGTTCTTATTTATTCCAATAATATATAAACTGGAAAAGTGGGAATGGATTGATATTTGATTTGATTTAGTATTACTACAGCTACCTTGATTTAAAACAAGAAGTAAATCTGAGTTAGGAGTTAACCATTTTTCATATCCAGATTTAGGAGGAAACACGTCATTAGTGTTTTGAATTAATTAATTGTTCAAGTTGAATTAATATCTTTTTGTGATAATTTATT

mRNA sequence

GTGTCAAATTAAATCAAATGTAGATAAAAACATGGGCATGTTCCTAGTTTTCGAAATGTTTGGTCAATTGCAGGAAGAAAACAAGGCGAATTAAAGCCATTACCTCAATTGGAACGCAAATATCTTCATCCTCTTCTTCCATCATCCTTCAATCAATCAGAAACAGCTCCATTAGCATCATCAGAGATTACCAATGGCCGCTCTTCTTCTTCATTCCTCTTCGACTGCGAGCGTTCTGTTTGGAGGAGTGGGGAAACTAAAGGGACGGAATCATCATTCGATTTTATCATCCAACAAACCTATGCGCGGTAACTATCTTAGTCTCGGCTGCAATAATTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGTTGAGGATCCCGTTATCAAAGAAGCTCTTAAGGAGCCAGTTGCCTTCGCAGGTGGGCTATTTGCTGGCCTTCTAAGGCTTGATTTGAACGAAGATCCATTGAAGGAATGGGTTAAGAAGACAGTGGAATCAGCTGGACTCACGGAAGAAGTTGATACTCAAGAATCTGTACAAGAGGATGGCCCGACCGCGATCGAGATTGAATGATCCCATCAATGGACCTAACCTCTTACAGTTCGTTCTTATTTATTCCAATAATATATAAACTGGAAAAGTGGGAATGGATTGATATTTGATTTGATTTAGTATTACTACAGCTACCTTGATTTAAAACAAGAAGTAAATCTGAGTTAGGAGTTAACCATTTTTCATATCCAGATTTAGGAGGAAACACGTCATTAGTGTTTTGAATTAATTAATTGTTCAAGTTGAATTAATATCTTTTTGTGATAATTTATT

Coding sequence (CDS)

ATGGCCGCTCTTCTTCTTCATTCCTCTTCGACTGCGAGCGTTCTGTTTGGAGGAGTGGGGAAACTAAAGGGACGGAATCATCATTCGATTTTATCATCCAACAAACCTATGCGCGGTAACTATCTTAGTCTCGGCTGCAATAATTCTACAAATGGCATCTGCGCATTTTTCTTCAATCCTGTTGAGGATCCCGTTATCAAAGAAGCTCTTAAGGAGCCAGTTGCCTTCGCAGGTGGGCTATTTGCTGGCCTTCTAAGGCTTGATTTGAACGAAGATCCATTGAAGGAATGGGTTAAGAAGACAGTGGAATCAGCTGGACTCACGGAAGAAGTTGATACTCAAGAATCTGTACAAGAGGATGGCCCGACCGCGATCGAGATTGAATGA

Protein sequence

MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQEDGPTAIEIE

Homology

[Close]

BLAST of Lsi02G000530 vs. ExPASy Swiss-Prot
Match: Q9FZ89 (UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g28150 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-18
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 58  FNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEE---VDTQ 117
           FN  ++P++ EALKEP+AF GG+FAGLLRLDLNE+PLK+WV +TVE++G+TEE    D  
Sbjct: 50  FNLPQEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDADGV 109

Query: 118 ESVQEDGPTAIEIE 129
            S  ED P  IEIE
Sbjct: 110 VSNDEDSPQQIEIE 123

[Close]

BLAST of Lsi02G000530 vs. ExPASy Swiss-Prot
Match: P74786 (UPF0426 protein ssl0294 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=ssl0294 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 27/67 (40.30%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 64  PVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTE--EVDTQESVQEDG 123
           PV +E  ++P+AFAGG  +G+LRL L +DPLK+W++K     G+T+    D  ++ Q++ 
Sbjct: 8   PVTRELCQQPIAFAGGFVSGVLRLKLTDDPLKKWLQK----QGVTDFSGADINQTAQDNR 67

Query: 124 PTAIEIE 129
           P +I+I+
Sbjct: 68  PQSIDID 70

[Close]

BLAST of Lsi02G000530 vs. ExPASy Swiss-Prot
Match: Q8YQ06 (UPF0426 protein asl4034 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=asl4034 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.5e-04
Identity = 21/65 (32.31%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 64  PVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQEDGPT 123
           P+ K+ ++ P +F GG  +G+LRL+L +DP+K W+ K       +  V    + +  GP 
Sbjct: 8   PIFKQLVQHPASFLGGFASGVLRLNLADDPVKSWLDKQRGVNSYSFPVTDAHNGKASGPQ 67

Query: 124 AIEIE 129
           +I I+
Sbjct: 68  SISID 72

[Close]

BLAST of Lsi02G000530 vs. ExPASy TrEMBL
Match: A0A5D3BGH6 (UPF0426 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00680 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.1e-55
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MAALLLHSSSTASVLFG +GKLK R+HHSILSS KPMR ++L LG NNSTNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           VEDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQ SVQED
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. ExPASy TrEMBL
Match: A0A1S3AZP7 (UPF0426 protein At1g28150, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484480 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.1e-55
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MAALLLHSSSTASVLFG +GKLK R+HHSILSS KPMR ++L LG NNSTNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           VEDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQ SVQED
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. ExPASy TrEMBL
Match: A0A0A0LT92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032470 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.6e-53
Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MAALLLHSSSTASVLFG +GKLKGRNH+SILSS KP+R ++  LG NNSTNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKGRNHNSILSSKKPVRSSFFRLGSNNSTNGISAFFFNP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           V DPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGL EEVDTQ SVQED
Sbjct: 61  VGDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLREEVDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. ExPASy TrEMBL
Match: A0A6J1E8W6 (UPF0426 protein At1g28150, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431718 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.6e-52
Identity = 107/128 (83.59%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MA LLLHSSSTASVL GG+GK +  N HSI S  KPMR N L LGC+NSTNGICAF FNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFSPKKPMRANRLRLGCSNSTNGICAFLFNP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           +EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+TEEVDTQ SVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. ExPASy TrEMBL
Match: A0A6J1KGM3 (UPF0426 protein At1g28150, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495083 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 105/128 (82.03%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MA LLLHSSSTA VL GG+GK +  N HSI S  KPMR N L LGCNNSTN ICAF F P
Sbjct: 1   MAGLLLHSSSTACVLLGGMGKFREGNRHSIFSPKKPMRANCLRLGCNNSTNAICAFLFTP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           +EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+TEEVDTQ SVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. NCBI nr
Match: XP_038893812.1 (UPF0426 protein At1g28150, chloroplastic [Benincasa hispida])

HSP 1 Score: 225.3 bits (573), Expect = 2.9e-55
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MAALLLHSSS  SVLFG +GKLKGRNHHSILSS+KP+RGN+L L CNN TNGI AFFFNP
Sbjct: 1   MAALLLHSSSATSVLFGEMGKLKGRNHHSILSSDKPVRGNFLRLRCNNPTNGISAFFFNP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           VEDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEE+DTQ SVQED
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEIDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. NCBI nr
Match: XP_008439829.1 (PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo] >KAA0036065.1 UPF0426 protein [Cucumis melo var. makuwa] >TYJ98872.1 UPF0426 protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MAALLLHSSSTASVLFG +GKLK R+HHSILSS KPMR ++L LG NNSTNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           VEDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQ SVQED
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. NCBI nr
Match: XP_004137400.1 (UPF0426 protein At1g28150, chloroplastic [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-52
Identity = 111/128 (86.72%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MAALLLHSSSTASVLFG +GKLKGRNH+SILSS KP+R ++  LG NNSTNGI AFFFNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKGRNHNSILSSKKPVRSSFFRLGSNNSTNGISAFFFNP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           V DPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGL EEVDTQ SVQED
Sbjct: 61  VGDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLREEVDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. NCBI nr
Match: XP_022924196.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata])

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-51
Identity = 107/128 (83.59%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MA LLLHSSSTASVL GG+GK +  N HSI S  KPMR N L LGC+NSTNGICAF FNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHSIFSPKKPMRANRLRLGCSNSTNGICAFLFNP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           +EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+TEEVDTQ SVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. NCBI nr
Match: XP_023518976.1 (UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 5.7e-51
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MAALLLHSSSTASVLFGGVGKLKGRNHHSILSSNKPMRGNYLSLGCNNSTNGICAFFFNP 60
           MA LLLHSSSTASVL GG+GK +  N H I S  KPMR N L LGC+NSTNGICAF FNP
Sbjct: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNP 60

Query: 61  VEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQESVQED 120
           +EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+TEEVDTQ SVQED
Sbjct: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120

Query: 121 GPTAIEIE 129
           GPT IEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Lsi02G000530 vs. TAIR 10
Match: AT1G28150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 4.7e-19
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 58  FNPVEDPVIKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEE---VDTQ 117
           FN  ++P++ EALKEP+AF GG+FAGLLRLDLNE+PLK+WV +TVE++G+TEE    D  
Sbjct: 50  FNLPQEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDADGV 109

Query: 118 ESVQEDGPTAIEIE 129
            S  ED P  IEIE
Sbjct: 110 VSNDEDSPQQIEIE 123

The following BLAST results are available for this feature:

BLAST of Lsi02G000530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ89	6.7e-18	60.81	UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
P74786	4.0e-07	40.30	UPF0426 protein ssl0294 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=11117...	[more]
Q8YQ06	5.5e-04	32.31	UPF0426 protein asl4034 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) ...	[more]

BLAST of Lsi02G000530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGH6	7.1e-55	89.06	UPF0426 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G0068...	[more]
A0A1S3AZP7	7.1e-55	89.06	UPF0426 protein At1g28150, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484480...	[more]
A0A0A0LT92	6.6e-53	86.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032470 PE=4 SV=1	[more]
A0A6J1E8W6	5.6e-52	83.59	UPF0426 protein At1g28150, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KGM3	1.4e-50	82.03	UPF0426 protein At1g28150, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

BLAST of Lsi02G000530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893812.1	2.9e-55	88.28	UPF0426 protein At1g28150, chloroplastic [Benincasa hispida]	[more]
XP_008439829.1	1.5e-54	89.06	PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo] >KAA0036065.1...	[more]
XP_004137400.1	1.4e-52	86.72	UPF0426 protein At1g28150, chloroplastic [Cucumis sativus]	[more]
XP_022924196.1	1.2e-51	83.59	UPF0426 protein At1g28150, chloroplastic [Cucurbita moschata]	[more]
XP_023518976.1	5.7e-51	82.81	UPF0426 protein At1g28150, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi02G000530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28150.1	4.7e-19	60.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..128
IPR040278	UPF0426 protein	PANTHER	PTHR35996	OSJNBA0038O10.25 PROTEIN	coord: 25..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G000530.1	Lsi02G000530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043086	negative regulation of catalytic activity
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030599	pectinesterase activity
molecular_function	GO:0046910	pectinesterase inhibitor activity