Lsi01G019900 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G019900
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPectin lyase-like superfamily protein
Locationchr01: 26578345 .. 26596453 (-)
RNA-Seq ExpressionLsi01G019900
SyntenyLsi01G019900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCGACCTCATGTCAAGATTATTTTTTCTTTGAGGAAATACGGTACTATTGTGTCTGGTGACGATATCACCCAGGTAAAATTTCAATAGAATGTACATTAAAGGTATCACTTTGTTGAGTTAACAATCAATTGTTTTCTAATTTCGATCACTTGTGAAATGTAGGCATTAACAAATGCATGGAAGGATGCATGTGCATCCCTTCAACCAAGTGCGTTTGTCATTCCAAGAGGGATATTTAAAGTAAGTGAAGCCAAATTTAAAGGCCCTTGCAAGAGCCCTATTGAAGTTCGACTTCGAGGAACATTGCAGGCTCCACAACACCTTAATGGAGATAGTTGGATTACTTTTGCATATGTTGATCGGTTGACATTATCAGGTGGAGGGGTTTTTGATGGGCAAGGAAAGAAAGGTTGGGAAAAAAATGATTGTCACAAAAACATAAACTGTGCTGACCTTCCCATTGTAAGCTTTATGAATTTGGTTTTCGTTTTTCAATCTCATGCATTATATGGTTGATTGTGAAAGAGTTTGTTCGAGTTTTTTCGTCTTTTAGGATAATATTTAAGCAACCAAGTTTTGAATTAAATTTTAATCATTAAAAAATTCATATAAAAAGTTAGGATTTAAAAACAAAATTACCAATTATATATACATATGTATAAAAGTTAGAAGTCATGGCTTTCTCCATGTGTATACAATTTTTTCATTTTCCCCAACTCTAATTCAATATTATTGATCATATAAAATGAGCAGAGTTTAAGGTTCAACTTCATTACCAATTCAGTTGTGAGGAGAATTATATCACTCGATAGTAAGAACTTCCATGTCAACGTTCTAGGTTGCAACAACCTTACATTTCATGGTGTCAACATAATTGCACCAGAAAATAGTCCCAATACTGATGGAATACACATTGGCCGGTCAAATGGGATCACAATCACAAAGTCTCAAATTGCAACAGGAGATGATTGCATCTCCCTTGGAGATGGAAGCAAACGAATTAAAGTCACCAATGTGACATGTGGGCCAGGGCATGGCATAAGCATAGGAAGTCTAGGAAAGTATAATAAAGAAGAAACCGTTGAAGGTATCATAGTAAAGAATTGCACCATAATGAACACAACTAACGGCGTCAGGATCAAAACATGGCCAGCTTCTCCTACTAGCGGCACTGCCACCAACATGCATTTTTCGGACATTATAATGGTCAATGTCAGCAACCCTATTCTCATAGACCAAGAGTATTGCCCATGGAATCAATGTAATCGACAGGTATTGATCATATTCTCAAAACTTTGATATTAAAACTCTTCTTGTCAACTTACCCCCTTTTTTTTTTAAATTTTGGTCATTTCATTTTAATTTTTCAGATCCCTTCAAAGATTAAGATTAGTAAAGTGAGCTTCAAGAATATTAGAGGAAGTTCTGCAACTCCCGTGGCAATCAAACTTATTTGCAGTAGTGACTTTCCATGTGACGAAGTAAAAATAACCAACATTGATCTTACTTACAATGGAATAAAAGGTTCCATTACATCTCAATGTACGAATGTAAACCCCATTATTCTAGGAAAACAAAACCCTCGAATATGCTCTTCCCCTTATGTTTACCCATAATTAGTTCATTGTGATAGTAGTTCAAAATGATGAACCAACCTTAACTAAAATAAGAACTCCTATCCATATTTAAATTTATATCTTTTGCAAACACATTTGTTCTACTTAAGTACCCTAACTTTTTTTCTTCTTATTATTATTATTATGGAAGTTCCCAAGTTCAAGTGTACACTATCAAAATAAAATAGTAATGTAAAATAGAAATGATCTAAGTATTGAATCCACAGGGAATGAAGTTTGCAAAAATCCAATTTTCAAGGCAAAGATCTCTTCAAAGCTTGAAACTAAATGTGACCTAAAATAGCTGAAAATGTTTGTGGGTTATGGAGACTAAAAGTTAAAGAAATTGAAAATGGAAAAACAAATGTCAATACTAAGGAGAGAATGGGGATTCAAAAAACTTTGAACTCTAGGGGAATATGCACCCACTTTATGATAAAGTCTAAATAATACCAAATAAAGTCCAAATCTATTTAAGTAAAATTTCAAATACTTATACACTTATGAAATTATAAATTGTGGTGTAGCCTATTTACCCAAATATTTAGTTAGAAAATTACTATAAATTGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTCATTGTCTATCTGTGATAGATCGCGATAGACTTCTATCGTTGTCTATCGCTCAAGTGATAGAATTCTATCACGATCTATCACTAATAGACAATAAAAAAAAAATTATATTTGTAAATAGTTTGGCTCATTTTTCTATATTTAAAAACAACCCTTTATTTATTTTCATATATAAACTTAATGGAAATTATTATAAACTGGAAAAATATCAAACTATTTACAAATATAAGAAAATTTTTCCTGTCTATCAGTGATAGACCGCGATCCTATCATCGAGCGATAAATGTCTATCGCGATCTATCGTTGATAAACAGTAAAAAAATTTCTATATTTATAAATATTTTATCTCATTTTTTTATATTTGAAAATATCCCTAAACTTAACCCAATTATTGACTTTAACTTGGTTAACTTTCAGATTCTACCATCAAAAGTCAAATTTTTCTCACTTCTAATTTTACAAGTCCAACTCTAAAATTAAATTGGTGGGAATTTTTAAAAATAGAAAAATAAGGAAAACTATTTATACAAAATAGCAAAATTTTTAGATAGTTGTGATAGACGCTGATAGAAGTCTATCAGGGTCTATCAGAGATAGAAATGATAGAAGTCTATCACTAATAGATGCTGATAGAAGTCTATCACTGTCTATGAGTATTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGATAGAATTCTATCGCGATCTATTAGTGATAAACTGTAAATTTTTTCTATATTTGTAAATAGTTTGGTTCATTTTTCTAAATTTGAAAAGAACCCTAAAATTTAACACTCTAAACTTGTGCTTTTGTCTACTATACATTAATAGCACAACAGTTGGCCAATGATTAGTTGGTAACCCTCTTATCATTTGAGTTGATTAATATCCTTTAGTTTGAATTTTCATGATTAATTTGATTAAATTATTAAGTTTAAAATTATATTTGTTGGGAATGCCTTGAGCTTTTTGACCCATAGCAAAAAGCTTTTTCCAAAAGATATTTGTTGTTCCACATTTCGAAGATTTTGATTTGCTTGAAAGTTTTGTGAATGTAAAATATATATTTAAGGGAAAATATATATTTAGGGGATTTTAGAAATCTAGATCCATTATTGTTGCTTCTTTCCTTATTTGTATTATTCTTCAAATTGTATTTAATCCTTTGTAATATACACAAAAAGACAAGGAAAATACATTCAAGATATATCTTGCAATATGGTATCAGAGCTTAGGGTTTCTTTAACCTAGCTCCCGACGCCGCCATCGCCGCCGCATCACCGGTGACCTGTACTCTGCCCAGATCCGTGCATCGCCGCCGCAGCACAAGATCTGATCCATCTGCCCAGATCCGTTCCATCCGTCGCAGCACTAGCATCACCGCCGCATCACCGGTGGGCTAGCCCGTTCACGGATCTGTCCCCGCCGTCGCCGCCCCAGCATCAGGTCCAGATCTCGATCGTTGCAGGCGTCGACCCGTGCGACTTCAGTCACCCAGATCTCGACTCGTGTTTTTCAGTCGTCCGCCGAAGATCTCGACCTGTGCACAACCGTCGCAGATCTCGCCGCCACTGTTCGCCGCAGTATTTTCCAGATTATTGCAGTGTTTTTTTTTTCAGTCGTTCATCCGCCGTTTGTATTTTCCAGACCTGGTATCAGTTCAAATCAGTCCGTCCAGATCCTTTACTCGCTCGCCTTGGTTAGTTCGCCTCAGTTCATCCCAATCAGTTTCTGTCTGGATCTGTCGCAGCTATCGACCTATCTGTCGCTCAGATTTACAGCAAACCTGTCAAACAGTATCTAGATCAATTGATATTGTGAGAGATATTTTTTTTTTTGCTATTCAATTAATTTGAGTAACAGTTGTTTCACTTATTGCCATCTGTTTACTATTGTGGGTATACTGTTTTGATTATCTAATCTCTTTTTCAATGGAAAAAGATCATATTTTTCGTCCCATTAGTACTATTCTTGATGGGACCAATTATCTTACGTGGGCCCATCAAATGAAAATCTTTCTCATTGGGAGAAAATTATGGCGTATTGTCACTGGTGATATATCTCAACCAGTTAAATCAGACTCTGAAGATGACGTTAAGTTTGGTGAGCGACTCGAAGATTGGGACAGTAAAAATCATCAAATTATCACCTGGCTCGGTAACACATCTATTCCTGCTATTCATGTTCAGTTCGATGCCTTTGATAATGCTAAGAAACTGTGGGATTTTTTGTCTGCTCGGTTTAAATCTATTGGATTAGCTCACTATTATCAGTTGCACAGTACACTTATCAGTCTTAATCAAGATACTGGGCAATCAGTCAATGAATATCTTACAGCTCTCCAGCCTATATGGACCCAGTTGGATCAAGCTAAAATTAGCCCAGATCATCTTCGACTTATTAAAGTCCTTATGGGACTCCGTCCAGAATACGAATCTGTCCGGGCTGCATTACTACATCGCAGTCCTTTACCTTCATTAGATGCAGCGATTCAAGAAATATTATTCGAAGAAAAACGACTTGGTATCATCCCATCCAAGCAATCCGAAGTTGTACTTGCAAGCACTCATTCACATAATTCCTCTGGAGCTCTCTTCTGCAAAAATTGTAAGCTCACTGGTCATAAATTTGTTGATTGTCCCAAAATAGAATGCAGGTAATGTAACAAACGAGGCCATATTTTGGACAATTGTCCCACACGACCACCTAGACCGCCAGGTTATCCAACAAAGTTAAAACCCTTTACTAAACCTGGTTCCTCATCAGTTGCTGCTGCCGCCACCTCCTCTGATGATCCATCCCCGCTCAATCCTCAGATAAGTGATCTTCAGGATCTGCTAAAGCAGTTAATTTCATCCACCTCTTCTGCTCTTGCCGTCTCACCAGGTAATAGATGGCTTCTTGACTCAGCTTGTTGTAATCATATGACCTCTGATTTTTCACTTATGACTGCAACTACTCCTGCAAAATCACTTCCTCCAATTTATGCTGCGGATGGTAATTGTATGACAATCTCTCATGTTGGCACAATTGTCACCTCCACATTGACCCTTCCCAACACTTGTCATGTCCCAAACCTGACTTTCAATCTTGCTTCAGTGGGACAATTATGTGATCTTGGTTTAACTGTTTCATTTTCTTCTCATGGTTGTCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGTACTGGTCGCAAAGTGGGAAGATTGTTTGAGCTCACATCACTTCAACTCCCTCCTTCCTCCGTTTCTGCTTCTGTCACTGACTCTGCTATATATCAGTGGCACCTTCGTCTTGGTCATGCTTCTTCTGATAAACTTCGTCATTTAATTTCTATTAGAAACTTAAATAATGTTAGCAAGTTTGTTCCTTTTCATTGCTTAAACTGCAAACTTGCAAAACAACCTACTTTATCCTTTTCTCAGTCTAATTCTCAATGTGATCAACCTTTTGACTTAATTCATTATGATATTTGGGGCCCTGCTCCTACTTCTACTGTCAATGGTTATCGCTATTTTGTTTTATTCATTGATGATTTTTCTCATTTTACGTGGATATATTTCCTCAAAAATCGTTCTGCCTTACCTCAAATTTATATTGACTTTGCTCATATGATTCAAACTCAATTCTCCCGTACTATTAAAATTCTTCACACAGATAATGCCATGGAATACAAAGACTTCAATCTCCTTACCTTTCTAACTCAGCAGGGCACTCTCGTTCAGCGCTCTTGTCCTCATACATCCCAACAAAATGGACGGGCAGAATGTAAACATCGACATATTCTGGATTCTGTTCATGCTCAACTCCTATCTGCCTCTTGTCCTGAAAAATTTTGGGGTGAGGCTGCACTTACTTCTGTTTATACCATCAATCGTCTCCCTTCTTCTGCTCTTCAGAATATCTCCCCATTTGAACGATTATATGGTACTCCTCCTACCTACTCTAATCTTAAAGTCTTTGGTTGTGCTTGTTTTGTTCTCCTTCATCCCCATGAACACACCAAATTAGAACCTCGTGCTCGTCTCTGTTGCTTCCTTGGCTACGGAACCGAACATAAAGGATTTCGCTGTTGGGACCCCCTCTCTGATAGGCTACGCATCTCTCGTCATGTCACTTTTTGGGAACATCCCATGTACTCTAGTCTCTCATCATTTCATACCTCCCTATCGAGTCCTCACTCTTTCTTCACAGATGCTTCCATTGATCTCTTCCCTTCGTCTGAGTCTATTCCTGACATTGAGCTCGATCAATCTATACCAGTATCTGTAGACCCGGATCAGCCTTCTGTCTCCACTGAGGAACCTGCACCTACACATGAACCAGTTCGCATTGTTCGTCGCTCCACTCGGGTAAGAGAAACTCCCACTCATCTCCAAGATTATCATTATTTTTCTACTGTAGCATCCTTGATTGAACCCACCTCTTATCACGAGGCAAGTACTAATCCTTTATGGCAGCAAGCAATAAATGAGGAACTTCAAGCTCTAGAAAAGACACACACGTGGGACTTTGTTGATCTTCCACCTGGCAAAAGACCCATTGGTTGCAAATGGATCTATAAAATCAAAACACATTCTGATGGATCCATTGAACGATATAAAGCTCGACTTGTGGCGAAAGGTTATTCACAAGAATATGGCATAGATTATGAAGAGACCTTTGCTCCTGTCGCTCGGATGACATCCGTTCGTAGTCTCTTGGTCGTTGCTGCTGCCAAACAGTGGCTCCTTCTTTAGATGGATGTCAAGAATGCTTTTCTTAATGGGACTTTATCTGAGGAAGTATATATGAAACCACCTTCAGGTACTTCTCCTCCACCGCAAAAAGTATGTCTTCTTCGTCGAGCATTGTATGGTCTAAAACAGGCTCCGCGCGCCTGGTTTGCAACCTTTAGTTCCACCATCACTCAACTAGGGTTTAATTCGAGCCCTCATGATACAACACTCTTTATGCGCCAGACACCTCATGGTATGGTTCTTCTTCTTCTATATGTTGATGATATGATTATTACTGGTGATGATCCTCAGGCCATATCAGACCTACAAACTTACCTTGGAGCACAGTTCGAGATGAAAGATCTCGGATCCCTAAATTATTTTCTTGGCCTTGAGGCATCAATGCGATCTAATGGTTACTTGTTGTCTCAAGCCAAATATGCCTCTGATCTGTTAGCTCGCTCCGGTATCACTGATTCTGCCACAGCTTCCACACCACTTGATCCTAATGTTCATTTGACTCCGTTTGAAGGTGTTCCTCTTGAAGATGCGAGCCTATATCGTCAACTTGTTGGCAGTCTTATTTATCTGACAGTGACACGTCCAGACATTGCATACGCTGTCCATATTGTTAGTCAATTCATGGCTGCTCCAAGGACCATCCATTTCACAGCTGCTCTTCGTATTCTTCGCTATGCCAAGGGTACCTTGGGACATGGACTTCAGTTCTCGTCCCAGTCTTCTCTTGTGTTATCTAGTTACTCCGATGTTGATTGGGCTGGCGACCCCACTGATCGACGCTCTACCACAGGTTATTGCTTCTACTTAGGTGATTCTCTCATATCTTGGCGGAGTAAGAAACAAAGTGTTGTTTCTCGTTCTAGCACTGAATCTGAATATCGTGCTCTTGCTGATGCTACTTCAGAATTATTATGGCTCCGCTGGCTCCTTGCAGACATGGGGGTACCTCAACAGTCTGCTACTATACTTCATTGTGACCATCGCAGTGCCATCCAGATTGCTCACAACGATGTCTTTCATGAACGCACTAAACATATTGAGAATGACTGTCACTTTGTTCGTCATCACCTCCTGAATAACACTCTTCTCTTACGATCTATTTCCACTACCGAACAACCAGCTGACATCTTCACCAAAGCCTTGTCACCTGGTCGCTTTCATCAGTTATCTACCAAACTCAAGCTGGTTGCTACTCTACCATCTTGAGTTTGAGGGAGGGTGTGAATGTAAAATATATATTTAGGGGATTTTAGAAATCTAGATCCATTATTGTTTCTTATTTCCTTATTTGTATTATTCTTCAATTTGTATTTAATCCTTTGTAATATACACAAAAAGACAAGGAAAATACATTCAAGATATATCTTGCAATAAGTTTAATTACCAAGTTTTCATGTGAAATTCCAAAATGTAGTTGTGGTGATAATAGAATCTTTCACCACGCACTCTTGTGCTGAACTCTTTTCCTACGACTACTCATGTATCAAGAATGTTGTGTTAATCTTGGAGAGCAACCAATGGGAGACGATGAACACTAAGGTCGTGTTGTAATTGCTTTCAAGGTAGTGGTCATTCCGCAACACATCTATTATTCTTATCAACATTCGATTTCATCAATATTTAGGTCACTCAGACTTTAAGTTGAGTCAAATTAGTATATGGATTGTGAATAAGGTCGTTAGTGGCTCTTCCTTCGAAATGCCTTAATGCTAAGTTGGAAAATCATAGAATGTTAGAATTGCTCTAAAAATGTTCTACATGTTGATTGTTGATTGTATAACGACTGATGATGAATATAATAGGAATGAACACTTCACCCTCTAGTAGAATTCTTAGGTCTCTAAACGAATTAGAAAACTAAAACTAGGATCAAGTATTTAGAATCAAACAAAAATATATAAATGTTGGGTTCTTTTCAAATATAGAAAAATAAGTCAAACTATTTATAAATATAAAAATATTTTACTATCTATTAGCGATAGACTGCAATAGAATTCTATTGATTGAGCGGTAGTCAGCGATAGAAGTCTATCGTTATCTATCGCTGATAGACAGTAAAATGTTTCTATAATTATAAATAGTTTGATATTTTTTTCTGTTTATAGTAACTTCCCTGACAGTAAAATTTTTCTATATTTGTAAATAATTTGGCTTATTTTTCTATATTTAAAAACAACTCATTTATTTAAGTATATATTTTACTAATTTGAATTTCGTTCAAATTTCAAATATATATTTTCCTTTATTGTATCTAATATATATTAATTCTTTTAATATTTAATGGATCAAATACAACGAGTACTTTTCTCTCTTATATTTAATATATTAAATGTATTAAATATTAATTCGAACATTCCAAATTAAATAATTATATTTCAATTTTTTTTCTTCAACTAAATTGGTTCTTCTAGTGTTACTATAAGCTAATGGAGAAACTTATAGACCTACAGACTATAATCTAGATTATAAGCTTTAGTGATACAAAATTAATTTGTTAAACTCTTTAATCAACAGTCATTAACTCTAGGTCACTCTAACATAGATTTGAAGTTTTCATCTTAGGCATGGTACAACAAATTGTTTTCATGGATATAACCATTACATGCAATTCGATCATTCACAAGATGTTCGTAATTGCAACTGGGTCAAAATTTTGTTTAAAACCTATCATTACACATTATACCTTAAGTACCAATAATTCTATAATAAACAATCTATTTAAAATCCAATAATAAGTCAAGTACCACTCTTGGCTAGTGAGAGGATGCGGTCCCAATGTTTAGGCCTTAAAATCAAGTGTTGACCAGATAAATAGCAAATTTAGAGGTTTCATTTGGAAAAATAGCAAAAAAAATTTTAAATTGTGAAAATAGAATAATCGAATTAAATAATTAAAAATAATAATGTCAAATTGTCAAAACTGCCCTCACTTACAAATAAATACCTAACGTTCATAAGTTGAAGCTGGAAAATTTCATAAACGTTAAAAAAACTTCAAATACACTATAACTAAACAATTATCACGGTAACCAATACAGCATACCAAAAAGAGCTAAATCAACGCAAATACACTGTATTTAAGTATTATAGAAGATACACAAACATAAATTAAAAAAAAATATTGATGCAAAAATAGAATGTGTCGAACACATTTTTAAGGCAAGCAACCAATTGCTAGAGGATTGCAGCAGAAAACAAGATTTAGCATGATGGTTTGTGGTTGGAGTAGAGAGTGATATAAGAAGAGAAAAAAAAAAAGAGGAGATGGATCTTGTTGGCATTCAATAATGGGTGAAAACATCAAAGAGAAAAGAATGTAGGATTGAATGGAAGAAAATTATAGATGGAGAGTTGTATGGCTACCGATTATAGACTCATGAACGACCAAAAAAAGTGAGAAAAAGTAAAAAAAAAAAAAAAAAAAATACCTTAACCTGCTGCTTTGCGATAATGGTAGAACAACATAAGTGGGAGGAGAGAGAAGTTGTAGCTCGTAGGGTTACATTTTTCCCTTTTTTTCTTTCATTTACTTATTATTATTATTATTATTATTTAATTTTTATTTATTAGACATTTCAAATTTTGTTGAAATTTATTGGGTTTTTAAAAAATGAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCAATTAAGGTTAACTCTATAAAATTTCAATTAACGTTGACTCTTATGCTTTTCCCTCCTAAATTTAAAATTTATAAATTTCAAATCTTTCACCAACTTAAATACAAAATTTTCAAATCTTCTATCAAATAAATTTAAATTGATTACCATCTCAATTATATCCGTTTTGACACTAAAATACAAAATTAAAAGGAAACCAAAAGAGAACACTTACTTGGTCATAAATAACAACTATTTTCGTAAAGATATAATGATATATCATTTAATATATTTCAAAAACTATATACTAACAAAATAATATATCAATGATACAATGTGAAAATGGAATATGAAAAATATACAATCAATTAATCAAAATATGTATAAAATAATTAAAAAAAGATTAAAATACAATTACAATACGTTATATTTTTTTACCAAATTTTAAATAATTGTTAAATATTAAAATAAAATAAAATTTGATAATAAATATAAATTAAAAATAAAAATCCAGAGAGAAAAATAAGGAAGAAATTTGTTGAATTTGAATTAATTAGTAAAGTAGTTATGAAATTCTATTTTAAATATTAACAATAGATTTGAATTCAATAAAATTTGATAATAAATATAAATTAAAATTAAAAGTTGAGGGAGAAAAATAAGTAAGAAATTTTTTAATTTTGAATTAATTGATAAAGTAGTTATGAAAATCTATTTTGAATACTAAAAATAGATTTGAATTCAAAATTTGGGCGAAAATCAAGGGATGACGTTGAAATTCAGTTTTGAAATCGAATGTGTTAGGTATAATCTGATAATTTCGACTATCAATCAAGTTCCACAATTACACTGTATTTTAATTTTGGTTATGAATCAATCTTGCCATTTACACTGTATTTCATTTGTCGAATATGCAAACCAATCAAGGGCAAAACAGGTATTATGGAAAATTTACCCATGTGTCTTGCACACGTTTTGCCATAAATCTTATTATTCCTCATTTTTGCCATAAATCCAAACAACATCTCACTTTTTGCTATCCCATCCAATTTCCCTAAAATCAAAACTAATCAATCCTACTTACTCTATATTGGAATGAGTAAATTTTATCGTGTGAGATTAAGTTCACAACTCCCTATTCAGTTAAGTCCTCAAAATAGTAAGTTTATTGAGTCGACTACAAAACATTCAAATCAAAAGACAATCCTTTACAAATAGAAATTCATGACTCAATCAGTATTAAAATTGAGTCACAAGTGATAGTCCAATAAAATTTTAATCTTCTCAATTAATTGATTTATTAAGAGAGGGTTAAATATATTTTGTGCACCAATCTCATACGAACTCATTGTATATGATATCACTATTCACAAGTCTTCACATGAACTATTTAGATCAAATCATTTGTAATTATTATAAAGTGAGTCATATTAATATTGTTATCAAGATAAAACATTCAACCTTATCTATATACTTCCCGTAAGTTTGAACACAATCCTCCCTTATGTAACATATTATTAGCTTATACTAACAATCTTAATTTTTTATTATAATTAAAATAATCATTAAATAATAAACATTAATTACGAAGGATTAAGGCATAAATCTCACCTAATGATTCCTGATGATTGATGAATGAAGAAATTTTAATATTGAAAGCTCAAAGTTTTTTGTCTATCCCAGTTGATGACTGTCATGAAAGGTTTTCCATGTCACCTAATAAAGAATAAATATGTTTAAGGGGGAATTTAAGGCATACCCATGTTTTGCATATCTAACATGAGAGTTAAGAAGGTTAAGCTTAGTGGACTGAGGCTGAATGTCAACTAACCATCAATTGCAAGGATCTTTCATATTCATATTGAATTAAATAAAGGAAAAATTTTAAAAATAGAAAAATAAGAGAAATTATTTATGCAAAATAGCAAATTTTTTAGATAGTTGTAGTAGACGCTGATAGAAGTCTATTAGTGATAGAAATAATAGAAGTTTATCCTATCACTGATAAATGTGAATAGAAGTGTATCAATGTCTATCAATATTTTTTTTTTTTTGTTATTTTCTGTAAATAGTTTGACATTTTTTCTATTGGTGAAAATTTTTCTTAAATTAAATGACATTTTTTTATGCATTACGAACATTTTTAAAAGATGTTGGAAATATATATAGATATTTAATTTCGACGTCAAATCCTTCAATTTACAAATATATCAACATGTCAACAGATATTTTTATTCTTGGCCAACGTTTGGTCAAAGAAGGAAGGCAAAAATTACAATAAAAATGTTTTATGCCACACCAGTTAACCATTTAGGTAATGAACAACGTCGTTTGTTGTCGTATTTAATAGTCTTAGTTCGAGAGACTTATTAATCTGATTTAATTTACGATTCGCAAAGTTTTAATGGGATTTCAAACTAAATGTTTTATGAAGGTTTACTTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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mRNA sequence

GCTCGACCTCATGTCAAGATTATTTTTTCTTTGAGGAAATACGGTACTATTGTGTCTGGTGACGATATCACCCAGGCATTAACAAATGCATGGAAGGATGCATGTGCATCCCTTCAACCAAGTGCGTTTGTCATTCCAAGAGGGATATTTAAAGTAAGTGAAGCCAAATTTAAAGGCCCTTGCAAGAGCCCTATTGAAGTTCGACTTCGAGGAACATTGCAGGCTCCACAACACCTTAATGGAGATAGTTGGATTACTTTTGCATATGTTGATCGGTTGACATTATCAGGTGGAGGGGTTTTTGATGGGCAAGGAAAGAAAGGTTGGGAAAAAAATGATTGTCACAAAAACATAAACTGTGCTGACCTTCCCATTAGTTTAAGGTTCAACTTCATTACCAATTCAGTTGTGAGGAGAATTATATCACTCGATAGTAAGAACTTCCATGTCAACGTTCTAGGTTGCAACAACCTTACATTTCATGGTGTCAACATAATTGCACCAGAAAATAGTCCCAATACTGATGGAATACACATTGGCCGGTCAAATGGGATCACAATCACAAAGTCTCAAATTGCAACAGGAGATGATTGCATCTCCCTTGGAGATGGAAGCAAACGAATTAAAGTCACCAATGTGACATGTGGGCCAGGGCATGGCATAAGCATAGGAAGTCTAGGAAAGTATAATAAAGAAGAAACCGTTGAAGGTATCATAGTAAAGAATTGCACCATAATGAACACAACTAACGGCGTCAGGATCAAAACATGGCCAGCTTCTCCTACTAGCGGCACTGCCACCAACATGCATTTTTCGGACATTATAATGGTCAATGTCAGCAACCCTATTCTCATAGACCAAGAGTATTGCCCATGGAATCAATGTAATCGACAGATCCCTTCAAAGATTAAGATTAGTAAAGTGAGCTTCAAGAATATTAGAGGAAGTTCTGCAACTCCCGTGGCAATCAAACTTATTTGCAGTAGTGACTTTCCATGTGACGAAGTAAAAATAACCAACATTGATCTTACTTACAATGGAATAAAAGGTTCCATTACATCTCAATGTACGAATGCGTCGACCCGTGCGACTTCAGTCACCCAGATCTCGACTCGTGTTTTTCAGTCGTCCGCCGAAGATCTCGACCTGTGCACAACCGTCGCAGATCTCGCCGCCACTGTTCGCCGCATCGTTCATCCGCCGTTTGTATTTTCCAGACCTGGTATCAGTTCAAATCAGTCCGTCCAGATCCTTTACTCGCTCGCCTTGATGATCCAACAAAGCATAACTAACATGCAGCCAAAGAACTTACATATTGCAAAGTTGACAAAAGAGCACATACAGCATGAGGAGAAACAAGCGGTTAAAAGAGTACCAAAACCATTACTAGCTGCTTCAGATCATGACAAAACTTTAAGGATTTTCAATTTCATATCGTCTTGGACTGTACACATTAGAACTTCAAACAAATCGGGTGACTAA

Coding sequence (CDS)

GCTCGACCTCATGTCAAGATTATTTTTTCTTTGAGGAAATACGGTACTATTGTGTCTGGTGACGATATCACCCAGGCATTAACAAATGCATGGAAGGATGCATGTGCATCCCTTCAACCAAGTGCGTTTGTCATTCCAAGAGGGATATTTAAAGTAAGTGAAGCCAAATTTAAAGGCCCTTGCAAGAGCCCTATTGAAGTTCGACTTCGAGGAACATTGCAGGCTCCACAACACCTTAATGGAGATAGTTGGATTACTTTTGCATATGTTGATCGGTTGACATTATCAGGTGGAGGGGTTTTTGATGGGCAAGGAAAGAAAGGTTGGGAAAAAAATGATTGTCACAAAAACATAAACTGTGCTGACCTTCCCATTAGTTTAAGGTTCAACTTCATTACCAATTCAGTTGTGAGGAGAATTATATCACTCGATAGTAAGAACTTCCATGTCAACGTTCTAGGTTGCAACAACCTTACATTTCATGGTGTCAACATAATTGCACCAGAAAATAGTCCCAATACTGATGGAATACACATTGGCCGGTCAAATGGGATCACAATCACAAAGTCTCAAATTGCAACAGGAGATGATTGCATCTCCCTTGGAGATGGAAGCAAACGAATTAAAGTCACCAATGTGACATGTGGGCCAGGGCATGGCATAAGCATAGGAAGTCTAGGAAAGTATAATAAAGAAGAAACCGTTGAAGGTATCATAGTAAAGAATTGCACCATAATGAACACAACTAACGGCGTCAGGATCAAAACATGGCCAGCTTCTCCTACTAGCGGCACTGCCACCAACATGCATTTTTCGGACATTATAATGGTCAATGTCAGCAACCCTATTCTCATAGACCAAGAGTATTGCCCATGGAATCAATGTAATCGACAGATCCCTTCAAAGATTAAGATTAGTAAAGTGAGCTTCAAGAATATTAGAGGAAGTTCTGCAACTCCCGTGGCAATCAAACTTATTTGCAGTAGTGACTTTCCATGTGACGAAGTAAAAATAACCAACATTGATCTTACTTACAATGGAATAAAAGGTTCCATTACATCTCAATGTACGAATGCGTCGACCCGTGCGACTTCAGTCACCCAGATCTCGACTCGTGTTTTTCAGTCGTCCGCCGAAGATCTCGACCTGTGCACAACCGTCGCAGATCTCGCCGCCACTGTTCGCCGCATCGTTCATCCGCCGTTTGTATTTTCCAGACCTGGTATCAGTTCAAATCAGTCCGTCCAGATCCTTTACTCGCTCGCCTTGATGATCCAACAAAGCATAACTAACATGCAGCCAAAGAACTTACATATTGCAAAGTTGACAAAAGAGCACATACAGCATGAGGAGAAACAAGCGGTTAAAAGAGTACCAAAACCATTACTAGCTGCTTCAGATCATGACAAAACTTTAAGGATTTTCAATTTCATATCGTCTTGGACTGTACACATTAGAACTTCAAACAAATCGGGTGACTAA

Protein sequence

ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINCADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTNASTRATSVTQISTRVFQSSAEDLDLCTTVADLAATVRRIVHPPFVFSRPGISSNQSVQILYSLALMIQQSITNMQPKNLHIAKLTKEHIQHEEKQAVKRVPKPLLAASDHDKTLRIFNFISSWTVHIRTSNKSGD
Homology
[Close]
BLAST of Lsi01G019900 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 7.0e-116
Identity = 200/341 (58.65%), Postives = 248/341 (72.73%), Query Frame = 0 

Query: 22  DITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEVRLRGTLQA---PQH 81
           D TQALT AWK+ACAS  PS  ++P+G F V     +GPCKS I ++L+GTL+A   P  
Sbjct: 1   DSTQALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADPSK 60

Query: 82  LNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKN-INCADLPISLRFNFITNSVV 141
           + G  WI    +D LT+ GGGVFDGQGK  W +NDCHKN   C  L ++LR   +TNS++
Sbjct: 61  IKGLGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSIL 120

Query: 142 RRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNGITITKSQIATGDD 201
           R + +LDSKNFHVNV+GC NLTF    I A E S NTDGIHIGRS+G+ I  ++I TGDD
Sbjct: 121 RDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDD 180

Query: 202 CISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCTIMNTTNGVRIKTW 261
           CISLGDGSK I +TN+TCGPGHGIS+GSLG+Y  EE+V GI VKNCTI  + NGVRIKTW
Sbjct: 181 CISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTW 240

Query: 262 PASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIKISKVSFKNIRGSS 321
           P S   G A+ MHF DI M +V  PILIDQ YCP+NQC  ++PS +K+SK+SFKNI+G+S
Sbjct: 241 PKS-EPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTS 300

Query: 322 ATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
            T  A+KL+CS  FPC+ V++ +IDLTY+G  G  TS C N
Sbjct: 301 TTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCEN 340

[Close]
BLAST of Lsi01G019900 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.2e-107
Identity = 180/350 (51.43%), Postives = 245/350 (70.00%), Query Frame = 0 

Query: 13  KYGTIVSG-DDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEVRLRG 72
           K+G    G  D+++   +AWK+ACAS+ PS  VIP+G + +S+   +GPCK+PIE+ ++G
Sbjct: 34  KFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQG 93

Query: 73  TLQA---PQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINCADLPISLR 132
           T+QA   P      +W+ F  V+   + GGG+FDGQG   +EKN C      + LP+++R
Sbjct: 94  TIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLPVNIR 153

Query: 133 FNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNGITIT 192
           F+F+TN++++ I S DSK FH+NV  C N+T   + I AP+ SPNTDGIH+G+S G+ I 
Sbjct: 154 FDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNII 213

Query: 193 KSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCTIMNT 252
            S I TGDDCIS+GDG+K + +  +TCGPGHGISIGSLGK+  EE VEGI + NCTI NT
Sbjct: 214 ASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNT 273

Query: 253 TNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIKISKV 312
           +NG RIKTWP     G  + +HF DI M NVS+PILIDQ+YCPWN+C +   SK+K+S +
Sbjct: 274 SNGARIKTWPGE-HGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNI 333

Query: 313 SFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SFKNIRG+SA P AIK ICS   PC  V++ +ID+ +NG + + TSQC N
Sbjct: 334 SFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAEPA-TSQCLN 381

[Close]
BLAST of Lsi01G019900 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 1.6e-107
Identity = 180/350 (51.43%), Postives = 245/350 (70.00%), Query Frame = 0 

Query: 13  KYGTIVSG-DDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEVRLRG 72
           K+G    G  D+++   +AWK+ACAS+ PS  VIP+G + +S+   +GPCK+PIE+ ++G
Sbjct: 34  KFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQG 93

Query: 73  TLQA---PQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINCADLPISLR 132
           T+QA   P      +W+ F  V+   + GGG+FDGQG   +EKN C      + LP+++R
Sbjct: 94  TIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLPVNIR 153

Query: 133 FNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNGITIT 192
           F+F+TN++++ I S DSK FH+NV  C N+T   + I AP+ SPNTDGIH+G+S G+ I 
Sbjct: 154 FDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNII 213

Query: 193 KSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCTIMNT 252
            S I TGDDCIS+GDG+K + +  +TCGPGHGISIGSLGK+  EE VEGI + NCTI NT
Sbjct: 214 ASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNT 273

Query: 253 TNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIKISKV 312
           +NG RIKTWP     G  + +HF DI M NVS+PILIDQ+YCPWN+C +   SK+K+S +
Sbjct: 274 SNGARIKTWPGE-HGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNI 333

Query: 313 SFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SFKNIRG+SA P AIK ICS   PC  V++ +ID+ +NG + + TSQC N
Sbjct: 334 SFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAEPA-TSQCLN 381

[Close]
BLAST of Lsi01G019900 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 7.8e-107
Identity = 190/371 (51.21%), Postives = 254/371 (68.46%), Query Frame = 0 

Query: 8   IFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEV 67
           +  + K+G      DI QALT+AW +ACAS   +  VIP G ++++  + KGPCK+PIE+
Sbjct: 24  VLDISKFGG-KPNSDIGQALTSAWNEACASTTAAKIVIPAGTYQLNGIELKGPCKAPIEL 83

Query: 68  RLRGTLQAPQH---LNG-DSWITFAYVDRLTLSGGGVFDGQGKKGWEKND-----CHKNI 127
           ++ GT+QAP     + G + W  F Y+D LTLSG GVFDGQG   ++K         KN 
Sbjct: 84  QVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQGATVYKKAAPASAWSGKNS 143

Query: 128 NCADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIH 187
           N + + ++  FNF+ NS+VR + S DSKNFHV V GC N+TF G  I AP +SPNTDGIH
Sbjct: 144 N-SKVFMNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIH 203

Query: 188 IGRSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGI 247
           +G+S  + I  + I TGDDC+S+GDGSK+I V  V CGPGHG+S+GSLGK+  EE VEGI
Sbjct: 204 MGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGI 263

Query: 248 IVKNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQ 307
            VKNCT+  T NGVRIKTWP +P + T +++HF DI M NV NP++IDQEY PWNQC+++
Sbjct: 264 TVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKK 323

Query: 308 IPSKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 367
            PSKIK+SK+SFKN++G+S T   + LICSS  PCD V++ N+DL +NG     T++CTN
Sbjct: 324 NPSKIKLSKISFKNVKGTSGTAEGVVLICSSAVPCDGVELNNVDLKFNG--APTTAKCTN 383

Query: 368 ASTRATSVTQI 370
                T    +
Sbjct: 384 VKPLVTGTAPV 390

[Close]
BLAST of Lsi01G019900 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 6.6e-106
Identity = 182/355 (51.27%), Postives = 245/355 (69.01%), Query Frame = 0 

Query: 8   IFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCK-SPIE 67
           +F++  YG   +G DI+QA+  AWK ACAS  PS  +IP+G + + E   +GPCK S I 
Sbjct: 9   VFNVNDYGAKGAG-DISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSKIG 68

Query: 68  VRLRGTLQA---PQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINCADL 127
            ++ G ++A   P     D W++F  +D LT+SG G  DGQG+  W KN+C KN NC   
Sbjct: 69  FQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCKHA 128

Query: 128 PISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSN 187
            ++LRF+F+ +++VR I SL+SK FH+NVL C ++TF  V + AP  S NTDGIH+G S 
Sbjct: 129 AMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISK 188

Query: 188 GITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNC 247
           G+TIT ++IATGDDCIS+G GS+ + +T V CGPGHGISIGSLG+YN E+ V GI VK C
Sbjct: 189 GVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGC 248

Query: 248 TIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKI 307
           T   T NGVR+KTWP SP  G AT++ F D+ M NV NP+++DQEYCP+ QC+RQ PS+I
Sbjct: 249 TFSGTMNGVRVKTWPNSP-PGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQAPSRI 308

Query: 308 KISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           K+S ++F NIRG+S   VA+ + CS   PC  +KI  I+L+Y G  G  TS C+N
Sbjct: 309 KLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTCSN 361

[Close]
BLAST of Lsi01G019900 vs. ExPASy TrEMBL
Match: A0A5D3DD75 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00190 PE=3 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 1.0e-178
Identity = 297/358 (82.96%), Postives = 329/358 (91.90%), Query Frame = 0 

Query: 1   ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGP 60
           +R HV +IF LRKYG IVSG D+T+AL +AW DACASL+PSA VIP+G FKV E +FKGP
Sbjct: 25  SRSHVDVIFHLRKYGNIVSGADVTEALKDAWNDACASLRPSAVVIPKGTFKVREGEFKGP 84

Query: 61  CKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINC 120
           CKSP+EVR+RGTLQAP+H +GDSWITFAYVDR+TLSGGGVFDGQGK GWEKNDCHK+I+C
Sbjct: 85  CKSPVEVRVRGTLQAPKHPHGDSWITFAYVDRMTLSGGGVFDGQGKAGWEKNDCHKHISC 144

Query: 121 ADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIG 180
           A LPISLRFNFITNS+VRRI SLDSKNFHVN+LGCNNLTF GVNIIAPE+SPNTDGIHIG
Sbjct: 145 ARLPISLRFNFITNSIVRRITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIG 204

Query: 181 RSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIV 240
           RS GI+I KS+IATGDDCISLGDGSKR+K+TNVTCGPGHGISIGSLGKY  EE VEG+IV
Sbjct: 205 RSIGISILKSRIATGDDCISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIV 264

Query: 241 KNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIP 300
           KNCTIMNTTNGVRIKTWPASP +G ATNMHF DI MVNVSNPILIDQEYCPWNQCNR+IP
Sbjct: 265 KNCTIMNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIP 324

Query: 301 SKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SKIKI+KVSFKNIRGSSATPVA+KLICSS+ PC+EVK+ NIDL YNGIKGS+TS+C N
Sbjct: 325 SKIKINKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMN 382

[Close]
BLAST of Lsi01G019900 vs. ExPASy TrEMBL
Match: A0A1S3C2F4 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495704 PE=3 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 1.0e-178
Identity = 297/358 (82.96%), Postives = 329/358 (91.90%), Query Frame = 0 

Query: 1   ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGP 60
           +R HV +IF LRKYG IVSG D+T+AL +AW DACASL+PSA VIP+G FKV E +FKGP
Sbjct: 25  SRSHVDVIFHLRKYGNIVSGADVTEALKDAWNDACASLRPSAVVIPKGTFKVREGEFKGP 84

Query: 61  CKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINC 120
           CKSP+EVR+RGTLQAP+H +GDSWITFAYVDR+TLSGGGVFDGQGK GWEKNDCHK+I+C
Sbjct: 85  CKSPVEVRVRGTLQAPKHPHGDSWITFAYVDRMTLSGGGVFDGQGKAGWEKNDCHKHISC 144

Query: 121 ADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIG 180
           A LPISLRFNFITNS+VRRI SLDSKNFHVN+LGCNNLTF GVNIIAPE+SPNTDGIHIG
Sbjct: 145 ARLPISLRFNFITNSIVRRITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIG 204

Query: 181 RSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIV 240
           RS GI+I KS+IATGDDCISLGDGSKR+K+TNVTCGPGHGISIGSLGKY  EE VEG+IV
Sbjct: 205 RSIGISILKSRIATGDDCISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIV 264

Query: 241 KNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIP 300
           KNCTIMNTTNGVRIKTWPASP +G ATNMHF DI MVNVSNPILIDQEYCPWNQCNR+IP
Sbjct: 265 KNCTIMNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIP 324

Query: 301 SKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SKIKI+KVSFKNIRGSSATPVA+KLICSS+ PC+EVK+ NIDL YNGIKGS+TS+C N
Sbjct: 325 SKIKINKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMN 382

[Close]
BLAST of Lsi01G019900 vs. ExPASy TrEMBL
Match: A0A5A7UY44 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00230 PE=3 SV=1)

HSP 1 Score: 636.0 bits (1639), Expect = 1.3e-178
Identity = 298/358 (83.24%), Postives = 327/358 (91.34%), Query Frame = 0 

Query: 1   ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGP 60
           +R HV +IF LRKYG IVSG D+T+AL +AW DACASL+PSA VIP+G FKV E +FKGP
Sbjct: 25  SRSHVDVIFHLRKYGNIVSGADVTEALKDAWNDACASLRPSAVVIPKGTFKVREGEFKGP 84

Query: 61  CKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINC 120
           CKSPIEVR+RGTLQAP+H +GDSWITFAYVDR+TLSGGGVFDGQGK GWEKNDCHK I C
Sbjct: 85  CKSPIEVRVRGTLQAPKHPHGDSWITFAYVDRMTLSGGGVFDGQGKAGWEKNDCHKRIGC 144

Query: 121 ADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIG 180
           A LPISLRFNFITNS+VRRI SLDSKNFHVN+LGCNNLTF GVNIIAPE+SPNTDGIHIG
Sbjct: 145 ARLPISLRFNFITNSIVRRITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIG 204

Query: 181 RSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIV 240
           RS GI+I KS+IATGDDCISLGDGSKR+K+TNVTCGPGHGISIGSLGKY  EE VEG+IV
Sbjct: 205 RSIGISILKSRIATGDDCISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIV 264

Query: 241 KNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIP 300
           KNCTIMNTTNGVRIKTWPASP +G ATNMHF DI MVNVSNPILIDQEYCPWNQCNR+IP
Sbjct: 265 KNCTIMNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIP 324

Query: 301 SKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SKIKI+KVSFKNIRGSSATPVA+KLICSS+ PC+EVK+ NIDL YNGIKGS+TS+C N
Sbjct: 325 SKIKINKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMN 382

[Close]
BLAST of Lsi01G019900 vs. ExPASy TrEMBL
Match: A0A6J1C2C8 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111007743 PE=3 SV=1)

HSP 1 Score: 632.1 bits (1629), Expect = 1.9e-177
Identity = 297/358 (82.96%), Postives = 328/358 (91.62%), Query Frame = 0 

Query: 1   ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGP 60
           AR  V +++ LRKYG +VSG D++QAL NAWKDACAS++PSA VIPRGIFKVS+  F+GP
Sbjct: 24  ARSRVDVVYHLRKYGAVVSGADVSQALANAWKDACASVRPSAVVIPRGIFKVSKGNFRGP 83

Query: 61  CKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINC 120
           CKS IE RLRGTLQAP H  G+SWITFAY+DRLTL GGGVFDGQGK GWEKNDCHK+INC
Sbjct: 84  CKSRIEFRLRGTLQAPTHPKGESWITFAYIDRLTLLGGGVFDGQGKAGWEKNDCHKSINC 143

Query: 121 ADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIG 180
           A LPISLRF+FITNS V+RI SLDSK+FHVN+LGCNNLTFHGVNIIAPE+SPNTDGIHIG
Sbjct: 144 AKLPISLRFDFITNSTVKRITSLDSKHFHVNILGCNNLTFHGVNIIAPEDSPNTDGIHIG 203

Query: 181 RSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIV 240
           RS GITITKS+IATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLG+Y KEE V+G+IV
Sbjct: 204 RSKGITITKSRIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGRYTKEEPVKGVIV 263

Query: 241 KNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIP 300
           KNCTIMNTTNGVRIKTWPAS  +GTATNMHF DIIMVNVS+PILIDQEYCPWNQCNRQIP
Sbjct: 264 KNCTIMNTTNGVRIKTWPASADTGTATNMHFVDIIMVNVSHPILIDQEYCPWNQCNRQIP 323

Query: 301 SKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SKIKISKV+FKNIRGSSATPVA+KLICSS  PCDEVK+T+IDLTY GI+G +TSQC+N
Sbjct: 324 SKIKISKVTFKNIRGSSATPVAVKLICSSGLPCDEVKMTDIDLTYTGIQGPVTSQCSN 381

[Close]
BLAST of Lsi01G019900 vs. ExPASy TrEMBL
Match: A0A0A0K3B7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 622.1 bits (1603), Expect = 2.0e-174
Identity = 296/358 (82.68%), Postives = 322/358 (89.94%), Query Frame = 0 

Query: 1   ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGP 60
           AR HV  IFSLRKYG IVSG D+T+AL +AW DACAS +PSA VIP+G FKV E +FKGP
Sbjct: 25  ARSHVD-IFSLRKYGNIVSGADVTEALKDAWNDACASDRPSAVVIPKGTFKVREGEFKGP 84

Query: 61  CKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINC 120
           CKSPIE R+ GTLQAP+H +GDSWITFAYVDR+ LSGGGVFDGQGK GWEKNDCHK I+C
Sbjct: 85  CKSPIEFRVHGTLQAPKHPHGDSWITFAYVDRMRLSGGGVFDGQGKAGWEKNDCHKRIDC 144

Query: 121 ADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIG 180
           A LPISLRF+FITNS+VRRI SLDSKNFHVN+LGCNNLTF GVNIIAPENSPNTDGIHIG
Sbjct: 145 AKLPISLRFDFITNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIG 204

Query: 181 RSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIV 240
           RS GI+I KS+IATGDDCISLGDGSKRIKV NV CGPGHGISIGSLGKYN EE VEG+IV
Sbjct: 205 RSIGISILKSRIATGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIV 264

Query: 241 KNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIP 300
            NCTI+NTTNGVRIKTWPASP +G ATNMHFSDI MVNVSNPILIDQEYCPWNQCNR+IP
Sbjct: 265 NNCTIINTTNGVRIKTWPASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREIP 324

Query: 301 SKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           S IKI+KVSFKNIRGSSATPVA+KLICSS+ PC+EVK+ NIDL YNGIKGSITS+C N
Sbjct: 325 SNIKINKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSITSECMN 381

[Close]
BLAST of Lsi01G019900 vs. NCBI nr
Match: XP_008455553.1 (PREDICTED: exopolygalacturonase-like [Cucumis melo] >TYK21621.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 636.3 bits (1640), Expect = 2.1e-178
Identity = 297/358 (82.96%), Postives = 329/358 (91.90%), Query Frame = 0 

Query: 1   ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGP 60
           +R HV +IF LRKYG IVSG D+T+AL +AW DACASL+PSA VIP+G FKV E +FKGP
Sbjct: 25  SRSHVDVIFHLRKYGNIVSGADVTEALKDAWNDACASLRPSAVVIPKGTFKVREGEFKGP 84

Query: 61  CKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINC 120
           CKSP+EVR+RGTLQAP+H +GDSWITFAYVDR+TLSGGGVFDGQGK GWEKNDCHK+I+C
Sbjct: 85  CKSPVEVRVRGTLQAPKHPHGDSWITFAYVDRMTLSGGGVFDGQGKAGWEKNDCHKHISC 144

Query: 121 ADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIG 180
           A LPISLRFNFITNS+VRRI SLDSKNFHVN+LGCNNLTF GVNIIAPE+SPNTDGIHIG
Sbjct: 145 ARLPISLRFNFITNSIVRRITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIG 204

Query: 181 RSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIV 240
           RS GI+I KS+IATGDDCISLGDGSKR+K+TNVTCGPGHGISIGSLGKY  EE VEG+IV
Sbjct: 205 RSIGISILKSRIATGDDCISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIV 264

Query: 241 KNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIP 300
           KNCTIMNTTNGVRIKTWPASP +G ATNMHF DI MVNVSNPILIDQEYCPWNQCNR+IP
Sbjct: 265 KNCTIMNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIP 324

Query: 301 SKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SKIKI+KVSFKNIRGSSATPVA+KLICSS+ PC+EVK+ NIDL YNGIKGS+TS+C N
Sbjct: 325 SKIKINKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMN 382

[Close]
BLAST of Lsi01G019900 vs. NCBI nr
Match: KAA0059116.1 (exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 636.0 bits (1639), Expect = 2.8e-178
Identity = 298/358 (83.24%), Postives = 327/358 (91.34%), Query Frame = 0 

Query: 1   ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGP 60
           +R HV +IF LRKYG IVSG D+T+AL +AW DACASL+PSA VIP+G FKV E +FKGP
Sbjct: 25  SRSHVDVIFHLRKYGNIVSGADVTEALKDAWNDACASLRPSAVVIPKGTFKVREGEFKGP 84

Query: 61  CKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINC 120
           CKSPIEVR+RGTLQAP+H +GDSWITFAYVDR+TLSGGGVFDGQGK GWEKNDCHK I C
Sbjct: 85  CKSPIEVRVRGTLQAPKHPHGDSWITFAYVDRMTLSGGGVFDGQGKAGWEKNDCHKRIGC 144

Query: 121 ADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIG 180
           A LPISLRFNFITNS+VRRI SLDSKNFHVN+LGCNNLTF GVNIIAPE+SPNTDGIHIG
Sbjct: 145 ARLPISLRFNFITNSIVRRITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIG 204

Query: 181 RSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIV 240
           RS GI+I KS+IATGDDCISLGDGSKR+K+TNVTCGPGHGISIGSLGKY  EE VEG+IV
Sbjct: 205 RSIGISILKSRIATGDDCISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIV 264

Query: 241 KNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIP 300
           KNCTIMNTTNGVRIKTWPASP +G ATNMHF DI MVNVSNPILIDQEYCPWNQCNR+IP
Sbjct: 265 KNCTIMNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIP 324

Query: 301 SKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SKIKI+KVSFKNIRGSSATPVA+KLICSS+ PC+EVK+ NIDL YNGIKGS+TS+C N
Sbjct: 325 SKIKINKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMN 382

[Close]
BLAST of Lsi01G019900 vs. NCBI nr
Match: XP_038887188.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 634.4 bits (1635), Expect = 8.1e-178
Identity = 299/354 (84.46%), Postives = 325/354 (91.81%), Query Frame = 0 

Query: 5   VKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSP 64
           V +IF LRKYG IV G D+T+AL +AW DACAS++P A VIP+GIFKVSEAKFKGPCKSP
Sbjct: 28  VDVIFPLRKYGNIVPGVDVTEALKDAWNDACASVRPCAVVIPKGIFKVSEAKFKGPCKSP 87

Query: 65  IEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINCADLP 124
           IE+RLRG+LQAP+H  GDSWITFAYV+RLTLSGGGVFDGQG+ GWEKNDCHKNINCA LP
Sbjct: 88  IEIRLRGSLQAPKHPYGDSWITFAYVNRLTLSGGGVFDGQGRAGWEKNDCHKNINCATLP 147

Query: 125 ISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNG 184
           ISLRF+FITNS+V+RI SLDSKNFH+NVLGCNNLTFHGVNIIAPENSPNTDGIHIGRS G
Sbjct: 148 ISLRFDFITNSIVKRITSLDSKNFHINVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSIG 207

Query: 185 ITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCT 244
           I+ITKS+IATGDDCISLGDGSKR+KVTNVTCGPGHGISIGSLGKY  EE VEG+I+KNCT
Sbjct: 208 ISITKSRIATGDDCISLGDGSKRVKVTNVTCGPGHGISIGSLGKYTNEEPVEGVIIKNCT 267

Query: 245 IMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIK 304
           IMNTTNGVRIKTWPASP SGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNR+IPSKIK
Sbjct: 268 IMNTTNGVRIKTWPASPVSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIK 327

Query: 305 ISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           ISKVSFKNIRGSSATP+A+KLICS   PCDEVK+ NIDL YNG +G I S C N
Sbjct: 328 ISKVSFKNIRGSSATPMAVKLICSRKLPCDEVKVANIDLVYNGKEGPIKSLCMN 381

[Close]
BLAST of Lsi01G019900 vs. NCBI nr
Match: XP_022135905.1 (exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 632.1 bits (1629), Expect = 4.0e-177
Identity = 297/358 (82.96%), Postives = 328/358 (91.62%), Query Frame = 0 

Query: 1   ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGP 60
           AR  V +++ LRKYG +VSG D++QAL NAWKDACAS++PSA VIPRGIFKVS+  F+GP
Sbjct: 24  ARSRVDVVYHLRKYGAVVSGADVSQALANAWKDACASVRPSAVVIPRGIFKVSKGNFRGP 83

Query: 61  CKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINC 120
           CKS IE RLRGTLQAP H  G+SWITFAY+DRLTL GGGVFDGQGK GWEKNDCHK+INC
Sbjct: 84  CKSRIEFRLRGTLQAPTHPKGESWITFAYIDRLTLLGGGVFDGQGKAGWEKNDCHKSINC 143

Query: 121 ADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIG 180
           A LPISLRF+FITNS V+RI SLDSK+FHVN+LGCNNLTFHGVNIIAPE+SPNTDGIHIG
Sbjct: 144 AKLPISLRFDFITNSTVKRITSLDSKHFHVNILGCNNLTFHGVNIIAPEDSPNTDGIHIG 203

Query: 181 RSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIV 240
           RS GITITKS+IATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLG+Y KEE V+G+IV
Sbjct: 204 RSKGITITKSRIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGRYTKEEPVKGVIV 263

Query: 241 KNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIP 300
           KNCTIMNTTNGVRIKTWPAS  +GTATNMHF DIIMVNVS+PILIDQEYCPWNQCNRQIP
Sbjct: 264 KNCTIMNTTNGVRIKTWPASADTGTATNMHFVDIIMVNVSHPILIDQEYCPWNQCNRQIP 323

Query: 301 SKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SKIKISKV+FKNIRGSSATPVA+KLICSS  PCDEVK+T+IDLTY GI+G +TSQC+N
Sbjct: 324 SKIKISKVTFKNIRGSSATPVAVKLICSSGLPCDEVKMTDIDLTYTGIQGPVTSQCSN 381

[Close]
BLAST of Lsi01G019900 vs. NCBI nr
Match: XP_031742281.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 630.2 bits (1624), Expect = 1.5e-176
Identity = 294/358 (82.12%), Postives = 327/358 (91.34%), Query Frame = 0 

Query: 1   ARPHVKIIFSLRKYGTIVSGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGP 60
           +R HV +IF LRKYG IVSG D+T+AL +AW DACAS++PSA VIP+GIFKV E +FKGP
Sbjct: 25  SRSHVDVIFPLRKYGNIVSGADVTEALKDAWNDACASVRPSAVVIPKGIFKVREGEFKGP 84

Query: 61  CKSPIEVRLRGTLQAPQHLNGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINC 120
           CKSPIE+R+RGTLQAP+H +GDSWITFAYVDR+TLSGGGVFDGQGK GWEKNDCHK I+C
Sbjct: 85  CKSPIEIRVRGTLQAPKHPHGDSWITFAYVDRMTLSGGGVFDGQGKAGWEKNDCHKRIDC 144

Query: 121 ADLPISLRFNFITNSVVRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIG 180
           A+LPISLRF+FITNS+V+RI SLDSKNFHVN+LGCNNLTF GVNIIAPE+SPNTDGIHIG
Sbjct: 145 ANLPISLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFKGVNIIAPEDSPNTDGIHIG 204

Query: 181 RSNGITITKSQIATGDDCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIV 240
           RS GI+I KSQIATGDDCISLGDGSKR+K+TNVTCGPGHGISIGSLGKY  EE VEG+IV
Sbjct: 205 RSIGISILKSQIATGDDCISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIV 264

Query: 241 KNCTIMNTTNGVRIKTWPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIP 300
           KNCTIMNTTNGVRIKTWPASP +G AT+MHFSDI MVNVSNPILIDQEYCPWNQCNR+IP
Sbjct: 265 KNCTIMNTTNGVRIKTWPASPNAGIATDMHFSDITMVNVSNPILIDQEYCPWNQCNREIP 324

Query: 301 SKIKISKVSFKNIRGSSATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           S IKI+ VSFKNIRGSSATPVA+KLICSS+ PC+EVK+ NIDL YNGI G ITSQC N
Sbjct: 325 SNIKINNVSFKNIRGSSATPVAVKLICSSNQPCEEVKVANIDLVYNGINGPITSQCMN 382

[Close]
BLAST of Lsi01G019900 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 423.7 bits (1088), Expect = 2.0e-118
Identity = 194/346 (56.07%), Postives = 251/346 (72.54%), Query Frame = 0 

Query: 19  SGDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEVRLRGTLQAPQH 78
           SG DITQAL  A+  AC S  PS  VIP+G FK+ E + +GPCK+PIEV L+GT++A  +
Sbjct: 31  SGSDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKADGN 90

Query: 79  L--NGDSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINCADLPISLRFNFITNSV 138
                + W+ F  +D   L+GGG FDG+G   W  N+CHK   C  LPIS+RF+FI NS 
Sbjct: 91  AIQGKEKWVVFGNIDGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLPISIRFDFILNSE 150

Query: 139 VRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNGITITKSQIATGD 198
           +R I S+D+KNFH+NVLG  N+T + + I+APE+SPNTDGIH+GRS+G+ I  S I+TGD
Sbjct: 151 IRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGD 210

Query: 199 DCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCTIMNTTNGVRIKT 258
           DCIS+GDG K + V  VTCGPGHGIS+GSLG+Y  E+ V GI V NCT+  T NG+RIKT
Sbjct: 211 DCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKT 270

Query: 259 WPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIKISKVSFKNIRGS 318
           WP++  S TA+++HF DII+ +VSNPILIDQEYCPWNQCN+Q  S IK+  +SFKNIRG+
Sbjct: 271 WPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGT 330

Query: 319 SATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTNASTR 363
           S    A+KL+CS  +PC  V+I +ID+ YNG  G  T  C+N S +
Sbjct: 331 SGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSNVSPK 376

[Close]
BLAST of Lsi01G019900 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 409.5 bits (1051), Expect = 3.9e-114
Identity = 187/351 (53.28%), Postives = 252/351 (71.79%), Query Frame = 0 

Query: 20  GDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEVRLRGTLQAPQHL 79
           G DIT AL  A+ +AC     S  +IP+G +K+ E    GPCK+PI + L GT++A  + 
Sbjct: 33  GSDITNALLKAFNEACQFPTKSTVMIPKGEYKLGEIVMMGPCKAPIRIALLGTVKADGNA 92

Query: 80  NG-DSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINCADLPISLRFNFITNSVVR 139
           NG + W+ F  ++   L+GGGVFDG+G   W  N+CHK  NC  LPIS+RF+F+T++ +R
Sbjct: 93  NGKEKWVAFRNINGFKLNGGGVFDGEGNAAWRVNNCHKTFNCKKLPISIRFDFVTDAKIR 152

Query: 140 RIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNGITITKSQIATGDDC 199
            I SLD+K+FH+NV+G  N+TF  V IIAP  SPNTDGIH+GRS+GI I  S I+TGDDC
Sbjct: 153 GITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDDC 212

Query: 200 ISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCTIMNTTNGVRIKTWP 259
           +S+GDG K + V  VTCGPGHGISIGSLG+Y+ EE V GI + NCT+  T NG+RIKTWP
Sbjct: 213 VSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWP 272

Query: 260 ASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIKISKVSFKNIRGSSA 319
           ++  + TA+++HF +I++ NVSNPILIDQEYCPWNQCN+Q PS IK++ +SFK IRG+S 
Sbjct: 273 SAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSG 332

Query: 320 TPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTNASTRATSVTQI 370
              A+KL+CS  +PC  V++ ++++ Y G  G  T QC+N S +    TQI
Sbjct: 333 NKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNVSPKLVG-TQI 382

[Close]
BLAST of Lsi01G019900 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 407.5 bits (1046), Expect = 1.5e-113
Identity = 189/345 (54.78%), Postives = 246/345 (71.30%), Query Frame = 0 

Query: 20  GDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEVRLRGTLQAP-QH 79
           G DITQAL  A+  AC +   S  VI +G FK+ E +  GPCK+P+E+ L+GTL+A  + 
Sbjct: 33  GSDITQALLKAFTSACQAPTASKVVITKGEFKLGEIEMTGPCKAPVEINLQGTLKADGKA 92

Query: 80  LNG-DSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINCADLPISLRFNFITNSVV 139
           + G + W+ F  ++   L+GGG+FDG+G   W  N+CHK   C  LPIS+RF+F+ N+ +
Sbjct: 93  IQGKERWVVFLRINGFKLNGGGIFDGEGNAAWRVNNCHKTFECKKLPISIRFDFVENAEI 152

Query: 140 RRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNGITITKSQIATGDD 199
           R I S+D+KNFH+NVLG  N+TF  V +IAP  SPNTDGIH+GRS G+ I  S+IATGDD
Sbjct: 153 RDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGDD 212

Query: 200 CISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCTIMNTTNGVRIKTW 259
           CIS+GDG K + V NV CGPGHGIS+GSLG+Y  E+ V GI V NCT+  T NG+RIKTW
Sbjct: 213 CISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTW 272

Query: 260 PASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIKISKVSFKNIRGSS 319
           P++  + TA+ +HF +II+ NVSNPILIDQEYCPWNQCN+Q PS IK+  +SFKNIRG+S
Sbjct: 273 PSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKPSTIKLVDISFKNIRGTS 332

Query: 320 ATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTNASTR 363
               A+KL+CS   PC  V+I NI+L Y G  G  T  C+N S +
Sbjct: 333 GNKDAVKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNVSPK 377

[Close]
BLAST of Lsi01G019900 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 405.2 bits (1040), Expect = 7.4e-113
Identity = 184/341 (53.96%), Postives = 244/341 (71.55%), Query Frame = 0 

Query: 20  GDDITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEVRLRGTLQAP-QH 79
           G DITQAL  A+  AC S  P   VIP+G FK+ E    GPCKSP+E+ L GT+ A    
Sbjct: 33  GSDITQALLRAFTTACQSPTPRKVVIPKGQFKLGEIMMSGPCKSPVEITLLGTVLADGNS 92

Query: 80  LNG-DSWITFAYVDRLTLSGGGVFDGQGKKGWEKNDCHKNINCADLPISLRFNFITNSVV 139
           ++G + W+ F  +D   L+GGG FDG+G   W  N+CHK   C  LPIS+RF+F+TN+ +
Sbjct: 93  IHGKEKWVVFQRMDGFRLNGGGTFDGEGNAAWRVNNCHKTFECKKLPISIRFDFVTNAEI 152

Query: 140 RRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNGITITKSQIATGDD 199
           R I S+D+KNFH+NV+G  N+TF  V I+AP  SPNTDGIH+GRS G++I  S+I+TGDD
Sbjct: 153 RDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGVSIINSRISTGDD 212

Query: 200 CISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCTIMNTTNGVRIKTW 259
           C+S+GDG   + V NV CGPGHGIS+GSLG+Y  E+ V GI V NCT+  T NG+RIKTW
Sbjct: 213 CVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTW 272

Query: 260 PASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIKISKVSFKNIRGSS 319
           P++  S TA+N+HF +II+ NVSNPILIDQEYCPWNQCN+Q  S IK++ +SF+ IRG+S
Sbjct: 273 PSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTS 332

Query: 320 ATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
               A+KL+CS  +PC+ V++ +I++ Y G  G  T  C+N
Sbjct: 333 GNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSN 373

[Close]
BLAST of Lsi01G019900 vs. TAIR 10
Match: AT3G14040.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 355.9 bits (912), Expect = 5.2e-98
Identity = 170/342 (49.71%), Postives = 228/342 (66.67%), Query Frame = 0 

Query: 22  DITQALTNAWKDACASLQPSAFVIPRGIFKVSEAKFKGPCKSPIEVRLRGTLQAPQHLNG 81
           D + A   AWK+ACA+   S   +P+G + V   +FKGPCK P+ + L G  +AP  +  
Sbjct: 85  DDSAAFAAAWKEACAA--GSTITVPKGEYLVESLEFKGPCKGPVTLELNGNFKAPATVKT 144

Query: 82  D----SWITFAYVDRLTLSGG-GVFDGQGKKGWEKNDCHKNINCADLPISLRFNFITNSV 141
                 WI F  +   TL+G   +FDGQG   W+ NDC K   C  LPI++RF  +TNS 
Sbjct: 145 TKPHAGWIDFENLADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLPINIRFTGLTNSK 204

Query: 142 VRRIISLDSKNFHVNVLGCNNLTFHGVNIIAPENSPNTDGIHIGRSNGITITKSQIATGD 201
           +  I S +SK FH+N+L C N+T   + I AP  S NTDGIHIGRSNG+ +  ++I TGD
Sbjct: 205 INSITSTNSKLFHMNILNCKNITLTDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGD 264

Query: 202 DCISLGDGSKRIKVTNVTCGPGHGISIGSLGKYNKEETVEGIIVKNCTIMNTTNGVRIKT 261
           DC+S+GDG++ + V NV CGPGHGISIGSLG+Y  E+ V+G+ V+ C I NT NGVRIKT
Sbjct: 265 DCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKT 324

Query: 262 WPASPTSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRQIPSKIKISKVSFKNIRGS 321
           WP SP  G A+N+ F DI M NVS P+LIDQEYCP+  C   +PSK+K+S V+ KNI+G+
Sbjct: 325 WPGSP-PGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGT 384

Query: 322 SATPVAIKLICSSDFPCDEVKITNIDLTYNGIKGSITSQCTN 359
           SAT VA+KL+CS   PC  + +++I+L +NG +G   S C+N
Sbjct: 385 SATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 423

The following BLAST results are available for this feature:
BLAST of Lsi01G019900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P245487.0e-11658.65Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1[more]
Q397661.2e-10751.43Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1[more]
Q397861.6e-10751.43Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1[more]
Q403127.8e-10751.21Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1[more]
Q6H9K06.6e-10651.27Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S... [more]
BLAST of Lsi01G019900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DD751.0e-17882.96Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3C2F41.0e-17882.96exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495704 PE=3 SV=1[more]
A0A5A7UY441.3e-17883.24Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A6J1C2C81.9e-17782.96exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111007743 PE=3 SV... [more]
A0A0A0K3B72.0e-17482.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037910 PE=3 SV=1[more]
BLAST of Lsi01G019900 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455553.12.1e-17882.96PREDICTED: exopolygalacturonase-like [Cucumis melo] >TYK21621.1 exopolygalacturo... [more]
KAA0059116.12.8e-17883.24exopolygalacturonase-like [Cucumis melo var. makuwa][more]
XP_038887188.18.1e-17884.46exopolygalacturonase-like [Benincasa hispida][more]
XP_022135905.14.0e-17782.96exopolygalacturonase-like [Momordica charantia][more]
XP_031742281.11.5e-17682.12exopolygalacturonase-like [Cucumis sativus][more]
BLAST of Lsi01G019900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G07820.12.0e-11856.07Pectin lyase-like superfamily protein [more]
AT5G48140.13.9e-11453.28Pectin lyase-like superfamily protein [more]
AT3G07840.11.5e-11354.78Pectin lyase-like superfamily protein [more]
AT3G07830.17.4e-11353.96Pectin lyase-like superfamily protein [more]
AT3G14040.15.2e-9849.71Pectin lyase-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 492..493
NoneNo IPR availablePANTHERPTHR31375:SF248POLYGALACTURONASEcoord: 13..364
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 13..364
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 235..256
e-value: 0.43
score: 19.6
coord: 205..225
e-value: 3000.0
score: 3.8
coord: 182..203
e-value: 350.0
score: 10.0
coord: 155..181
e-value: 70.0
score: 12.3
coord: 266..287
e-value: 7600.0
score: 0.9
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 3..407
e-value: 6.9E-103
score: 346.8
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 35..363
e-value: 3.0E-102
score: 342.0
IPR000743Glycoside hydrolase, family 28PROSITEPS00502POLYGALACTURONASEcoord: 212..225
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 6..368

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G019900.1Lsi01G019900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004650 polygalacturonase activity