Lsi01G019680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G019680
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L35a-1-like
Locationchr01: 25705673 .. 25708733 (-)
RNA-Seq ExpressionLsi01G019680
SyntenyLsi01G019680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAAATAACAAGAATAACCTAATAGCAGAAACCCTAGAAACACTTTAAATCATTTTTGACCCTCAAATCCCCACTATAAAAGCTTCCTCTTCTTCAAGCAGCTACCTTCTTCACTGAACGGCAGCTCCATCTTCCTTACTTCAACCTGCAAATCTAAGGTGATTATTCCTCTAAGATTTTTTTTTTTCCCTTCTCCATATCGTTTTCACTTGATTACCGATCTTAGTTCTTAGTTTCTTTGTTTGAAGGAGTCGTTTTTCAGAACCCTAGACTGCGGCAGCCATGGTGAAGGGAAGGCAGGGAGAAAGAGTTAGGTCTCTCTCCAAACCCTAGATCAACCCGATTTGATTATTTGGTTTCTTTGTGTTTTTACGGCTGTGCTAATGTATTGTATTTGTTTCAGACTCTACGTCAGGGGAACGGTCCTTGGTTACAAGAGGTAATTGGTTTCGCTTTGGTAATGGAATATTGGGTTGTTTCCTTTTTAGCGATGAATGCTACGTATCTGGTTATAGTTAGGAAAACAGAAAATGATGCAAAAGGGTACTTTTTAAGTTTAGTGCGATGCCGAGAACATTGATGAAACTTGAATAGAAATATTCGTTAGGTTTAGTGATAAATTACTGAGGGATGTTATAATTTGTGCGGGAGCTAAGAATGTGAAATTGGTGTTTAGATCGAAGTCAAACCAGTATCCAAGAACATCGCTGATCCAAATTGAAGGGGTGAACACCAGGGAAGAGGTCGCATGGTATGCTGGAAAGCGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTACCGATGCATTTGGGGCAAGGTTTCCAGGCCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCTAACTTGCCCCCAAAATCCATGGTAATGTGTAATGAGTAGCTGTTTCTTAATATTGGTTTAATTATGGTAAATTGGGATATGTTTTCTGATTGAATTACTGGAAAATTTTGCAGGGCGATAAAATTAGAGTATTTATGTACCCCAGCAATATATGAGGTACATTCCCCTCCTCCACTCTTTTAGTTTTAGAAACTGTAGTTGGCATTTGCATTTGGACAAAGGGGAAAACCATTCATGCTGTTCATCTTAATCATGTGATATAATAACTGCAATATACTTGATATTGCAGACTTTGTTAGTTTTCTTTTCTGATATTCAATTTTTGTTTGCTTTGCCTTTACTTAATGGGCTTTGTGATGTAAACCGGTGATCATTATGCATGTCAATGAACATTTCATTAAATTTCTGGAATATGTTTTCTCAATCTTTGTGCTTTTCTGTTCTTGGGTGAATATCTATCTTATTTTCTGTTGATTTTAGAATGATTATGTACGGATTGTCTTGTTTCTTCAATCTCTAATTAGAGCATGATGGCAATCAGAAATTCTTGAGACGTCTTTATCTATTCTTCCCACAGTTCAGTGCTTTTTTAGAGCTGCAGTACTGTGATGTTTTGTGTTTCGAAGAAAAAAGTTTGTTTCAATTTATATTTTCCTCTAGTGTTTTAACTTTCATATTCTATTCTTTTCTGTACATATGTTCGGTAGTTCACAAAAACCACTTTTTATCACAATTTTATTCTTCTTACATTAGTGTCTTTGGCTTATACCTTTATTTCTTGTCCGCACACTGGGATTTTTAGTTTTACATTTGGACCAAATTCATTTAATTTTTTTTTCTGAGTTCACTTCTTCAAAATTTACAGATTCCGGTCCACACCCCACTTACTGATCAGATGTCTTTCACTTGTCTGAAAGTACTTTTGGAGCCCTGGTTCTAACCACCTTTCTGTCCTATAGTGGTCCTGTGGATTTCATATGAACCATTAGAAGCCTAAATCGATACTAGTTGTTTTGGATCAATCTATATTTTTCTTTTATTATATTGTTCTTACAGCACTTCATGTTTAGGTGATAAGTTTAGGTTTAACTTCATTAGATTTAGATGATGTTTTCATGTGTGTTGAATGTGATGTTTGGGATTTGTTCACATGAACTAACATTATTTGACTACGAATTTCAGACTATTTTTTTCATCATTTTTTTGTTTAACTTTGTTGGGTGTGTGGTATGATGGTCATGTAATTCATCACATTGTGTGCACTATAAGTTTCATAAACTTGTTAGGTTAAACTTTTAATGTTTCATTCCCTTTACTCTTCATGGAAATTTGGCACGTCATCTTAAAATGAAGATTTTTCATCATCATGAATCAAGACATCACAAATTGTTATTCTTTGACCAGTGTTCATCCATGAATTAGAGCTTCATTTCCTGTACTGCTGATGCTAGGATCTGTGATTTTATTTTGTTACTTTTAAGCAATACTTCATAATGTCTTTTTTGAAAAGGTACTAGATCCTTCGTTTATTTCAGACTAACGATTGGAGTTTTTAGTTTGAGCAATTCAAATTGCATTGTTTCTGTGTCGTGAAACAAATTAATATTCGAGTCCGTTGGTGGATTTGTCAAAACTTGTAAAACCAGACGCCTTCTTCAAAATGTTTGGTTGTATGGTTTATTTAGTGTTGTTTCTGATGTCTTCTCTTTTATTATTTTTTGCAGTTCCTCTGATCAGCTAGCTAGAGGTCGGGTTTCATTTCTTTGTTGACTTGGGTGGATCGGTATTTTTGTTTTACTTTTCTTCCTACTGGACCCAATGTTTAGGTGTTATGTTTTCGTGTAAAACTTGACTAAATTTGGAACGTTCATCATGGAATATTTCTACTTTCAATTTTGACCGAGTTTCATTTCATATCAAGGCTTCTCTGGCAAGACATGCTGAGTATCAATGGTGGGTCACTTCGCTTGCATTTACACATATTATTCTTTTCATGGTTGACATTACTTGATGCTATTGTGAGTTTGAGAAACTTCATAGCAATGGCATGGCATGGCTTCACGTTAAATTGAGAAATGATTACATGTTACTTGTCTCTATACTTTTAGATTTGGTTCATTTTGGTTTTTGTATTTTAAAGATTAAAGAGGTTCATTTTGGCTCCTACACTTTTAA

mRNA sequence

TTGAAAATAACAAGAATAACCTAATAGCAGAAACCCTAGAAACACTTTAAATCATTTTTGACCCTCAAATCCCCACTATAAAAGCTTCCTCTTCTTCAAGCAGCTACCTTCTTCACTGAACGGCAGCTCCATCTTCCTTACTTCAACCTGCAAATCTAAGGAGTCGTTTTTCAGAACCCTAGACTGCGGCAGCCATGGTGAAGGGAAGGCAGGGAGAAAGAGTTAGACTCTACGTCAGGGGAACGGTCCTTGGTTACAAGAGGTTTAGTGATAAATTACTGAGGGATGTTATAATTTGTGCGGGAGCTAAGAATGTGAAATTGGTGTTTAGATCGAAGTCAAACCAGTATCCAAGAACATCGCTGATCCAAATTGAAGGGGTGAACACCAGGGAAGAGGTCGCATGGTATGCTGGAAAGCGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTACCGATGCATTTGGGGCAAGGTTTCCAGGCCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCTAACTTGCCCCCAAAATCCATGGGCGATAAAATTAGAGTATTTATGTACCCCAGCAATATATGAGTTCCTCTGATCAGCTAGCTAGAGGTCGGGTTTCATTTCTTTGTTGACTTGGGTGGATCGGTATTTTTGTTTTACTTTTCTTCCTACTGGACCCAATGTTTAGGTGTTATGTTTTCGTGTAAAACTTGACTAAATTTGGAACGTTCATCATGGAATATTTCTACTTTCAATTTTGACCGAGTTTCATTTCATATCAAGGCTTCTCTGGCAAGACATGCTGAGTATCAATGGTGGGTCACTTCGCTTGCATTTACACATATTATTCTTTTCATGGTTGACATTACTTGATGCTATTGTGAGTTTGAGAAACTTCATAGCAATGGCATGGCATGGCTTCACGTTAAATTGAGAAATGATTACATGTTACTTGTCTCTATACTTTTAGATTTGGTTCATTTTGGTTTTTGTATTTTAAAGATTAAAGAGGTTCATTTTGGCTCCTACACTTTTAA

Coding sequence (CDS)

ATGGTGAAGGGAAGGCAGGGAGAAAGAGTTAGACTCTACGTCAGGGGAACGGTCCTTGGTTACAAGAGGTTTAGTGATAAATTACTGAGGGATGTTATAATTTGTGCGGGAGCTAAGAATGTGAAATTGGTGTTTAGATCGAAGTCAAACCAGTATCCAAGAACATCGCTGATCCAAATTGAAGGGGTGAACACCAGGGAAGAGGTCGCATGGTATGCTGGAAAGCGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTACCGATGCATTTGGGGCAAGGTTTCCAGGCCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCTAACTTGCCCCCAAAATCCATGGGCGATAAAATTAGAGTATTTATGTACCCCAGCAATATATGA

Protein sequence

MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Homology
[Close]
BLAST of Lsi01G019680 vs. ExPASy Swiss-Prot
Match: Q9LMK0 (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.1e-50
Identity = 95/135 (70.37%), Postives = 106/135 (78.52%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKGRQGERVRLYVRGT+LGYK                       RSKSNQYP TSL+Q+
Sbjct: 1   MVKGRQGERVRLYVRGTILGYK-----------------------RSKSNQYPNTSLVQV 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNT EEV+WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPK
Sbjct: 61  EGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMG ++RVFMYPSNI
Sbjct: 121 SMGSRVRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. ExPASy Swiss-Prot
Match: Q9C912 (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.1e-50
Identity = 96/135 (71.11%), Postives = 106/135 (78.52%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKGRQGERVRLYVRGT+LGYK                       RSKSNQYP TSL+QI
Sbjct: 1   MVKGRQGERVRLYVRGTILGYK-----------------------RSKSNQYPNTSLVQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNT+EEV WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPK
Sbjct: 61  EGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMG ++RVFMYPSNI
Sbjct: 121 SMGSRVRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. ExPASy Swiss-Prot
Match: Q9FZH0 (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.5e-49
Identity = 96/134 (71.64%), Postives = 105/134 (78.36%), Query Frame = 0 

Query: 2   VKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQIE 61
           +KGRQGERVRLYVRGTVLGYK                       RSKSNQYP TSLIQIE
Sbjct: 1   MKGRQGERVRLYVRGTVLGYK-----------------------RSKSNQYPNTSLIQIE 60

Query: 62  GVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKS 121
           GVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKS
Sbjct: 61  GVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKS 111

Query: 122 MGDKIRVFMYPSNI 136
           MG ++RVFMYPSNI
Sbjct: 121 MGARVRVFMYPSNI 111

[Close]
BLAST of Lsi01G019680 vs. ExPASy Swiss-Prot
Match: P51422 (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 5.9e-49
Identity = 95/134 (70.90%), Postives = 105/134 (78.36%), Query Frame = 0 

Query: 2   VKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQIE 61
           +KGRQGERVRLYVRGTVLGYK                       RSKSNQYP TSL+QIE
Sbjct: 1   MKGRQGERVRLYVRGTVLGYK-----------------------RSKSNQYPNTSLVQIE 60

Query: 62  GVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKS 121
           GVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKS
Sbjct: 61  GVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKS 111

Query: 122 MGDKIRVFMYPSNI 136
           MG ++RVFMYPSNI
Sbjct: 121 MGARVRVFMYPSNI 111

[Close]
BLAST of Lsi01G019680 vs. ExPASy Swiss-Prot
Match: P41056 (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL33B PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 0 

Query: 8   ERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQIEGVNTRE 67
           E  RLYV+G  L Y+                       RSK    P  SLI+IEGV T +
Sbjct: 3   ESHRLYVKGKHLSYQ-----------------------RSKRVNNPNVSLIKIEGVATPQ 62

Query: 68  EVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIR 127
           E  +Y GKR+AY+Y+A  +  G+  R +WGKV+R HGNSG+VRA F++NLP K+ G  +R
Sbjct: 63  EAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVR 107

Query: 128 VFMYPSNI 136
           +F+YPSNI
Sbjct: 123 IFLYPSNI 107

[Close]
BLAST of Lsi01G019680 vs. ExPASy TrEMBL
Match: A0A6J1HTF7 (60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111467293 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 110/135 (81.48%), Postives = 112/135 (82.96%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKGRQGER+RLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGRQGERIRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDKIRVFMYPSNI
Sbjct: 121 SMGDKIRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. ExPASy TrEMBL
Match: A0A5A7TGR3 (60S ribosomal protein L35a-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002100 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.1e-53
Identity = 110/135 (81.48%), Postives = 111/135 (82.22%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKG QGER+RLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDKIRVFMYPSNI
Sbjct: 121 SMGDKIRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. ExPASy TrEMBL
Match: A0A1S3B4N4 (60S ribosomal protein L35a-1-like OS=Cucumis melo OX=3656 GN=LOC103486112 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.1e-53
Identity = 110/135 (81.48%), Postives = 111/135 (82.22%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKG QGER+RLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDKIRVFMYPSNI
Sbjct: 121 SMGDKIRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. ExPASy TrEMBL
Match: A0A6J1EL43 (60S ribosomal protein L35a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435550 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.0e-53
Identity = 109/135 (80.74%), Postives = 111/135 (82.22%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKG QGER+RLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDKIRVFMYPSNI
Sbjct: 121 SMGDKIRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. ExPASy TrEMBL
Match: A0A6J1HSC2 (60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111466132 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.7e-51
Identity = 107/135 (79.26%), Postives = 110/135 (81.48%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKG +GERVRLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGSKGERVRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDK+RVFMYPSNI
Sbjct: 121 SMGDKVRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. NCBI nr
Match: XP_038883794.1 (60S ribosomal protein L35a-1-like [Benincasa hispida])

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 112/135 (82.96%), Postives = 112/135 (82.96%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKGRQGERVRLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGRQGERVRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDKIRVFMYPSNI
Sbjct: 121 SMGDKIRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. NCBI nr
Match: XP_011653915.1 (60S ribosomal protein L35a-1 [Cucumis sativus] >KAE8649740.1 hypothetical protein Csa_012440 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 111/135 (82.22%), Postives = 112/135 (82.96%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKGRQGER+RLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGRQGERIRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDKIRVFMYPSNI
Sbjct: 121 SMGDKIRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. NCBI nr
Match: XP_022967923.1 (60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022967925.1 60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022967926.1 60S ribosomal protein L35a-1-like [Cucurbita maxima])

HSP 1 Score: 218.8 bits (556), Expect = 2.9e-53
Identity = 110/135 (81.48%), Postives = 112/135 (82.96%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKGRQGER+RLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGRQGERIRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDKIRVFMYPSNI
Sbjct: 121 SMGDKIRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. NCBI nr
Match: XP_008442180.1 (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo] >KAA0041236.1 60S ribosomal protein L35a-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 6.5e-53
Identity = 110/135 (81.48%), Postives = 111/135 (82.22%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKG QGER+RLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDKIRVFMYPSNI
Sbjct: 121 SMGDKIRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. NCBI nr
Match: XP_022928725.1 (60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022928726.1 60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022928728.1 60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_023522925.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >XP_023543608.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >XP_023543609.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >XP_023543610.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >KAG7033574.1 60S ribosomal protein L35a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-52
Identity = 109/135 (80.74%), Postives = 111/135 (82.22%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKG QGER+RLYVRGTVLGYK                       RSKSNQYPRTSLIQI
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYK-----------------------RSKSNQYPRTSLIQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK
Sbjct: 61  EGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMGDKIRVFMYPSNI
Sbjct: 121 SMGDKIRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. TAIR 10
Match: AT1G07070.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 198.7 bits (504), Expect = 2.9e-51
Identity = 95/135 (70.37%), Postives = 106/135 (78.52%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKGRQGERVRLYVRGT+LGYK                       RSKSNQYP TSL+Q+
Sbjct: 1   MVKGRQGERVRLYVRGTILGYK-----------------------RSKSNQYPNTSLVQV 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNT EEV+WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPK
Sbjct: 61  EGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMG ++RVFMYPSNI
Sbjct: 121 SMGSRVRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. TAIR 10
Match: AT1G74270.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 198.7 bits (504), Expect = 2.9e-51
Identity = 96/135 (71.11%), Postives = 106/135 (78.52%), Query Frame = 0 

Query: 1   MVKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQI 60
           MVKGRQGERVRLYVRGT+LGYK                       RSKSNQYP TSL+QI
Sbjct: 1   MVKGRQGERVRLYVRGTILGYK-----------------------RSKSNQYPNTSLVQI 60

Query: 61  EGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPK 120
           EGVNT+EEV WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPK
Sbjct: 61  EGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPK 112

Query: 121 SMGDKIRVFMYPSNI 136
           SMG ++RVFMYPSNI
Sbjct: 121 SMGSRVRVFMYPSNI 112

[Close]
BLAST of Lsi01G019680 vs. TAIR 10
Match: AT1G41880.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 195.3 bits (495), Expect = 3.2e-50
Identity = 96/134 (71.64%), Postives = 105/134 (78.36%), Query Frame = 0 

Query: 2   VKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQIE 61
           +KGRQGERVRLYVRGTVLGYK                       RSKSNQYP TSLIQIE
Sbjct: 1   MKGRQGERVRLYVRGTVLGYK-----------------------RSKSNQYPNTSLIQIE 60

Query: 62  GVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKS 121
           GVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKS
Sbjct: 61  GVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKS 111

Query: 122 MGDKIRVFMYPSNI 136
           MG ++RVFMYPSNI
Sbjct: 121 MGARVRVFMYPSNI 111

[Close]
BLAST of Lsi01G019680 vs. TAIR 10
Match: AT3G55750.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 194.9 bits (494), Expect = 4.2e-50
Identity = 95/134 (70.90%), Postives = 105/134 (78.36%), Query Frame = 0 

Query: 2   VKGRQGERVRLYVRGTVLGYKRFSDKLLRDVIICAGAKNVKLVFRSKSNQYPRTSLIQIE 61
           +KGRQGERVRLYVRGTVLGYK                       RSKSNQYP TSL+QIE
Sbjct: 1   MKGRQGERVRLYVRGTVLGYK-----------------------RSKSNQYPNTSLVQIE 60

Query: 62  GVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKS 121
           GVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKS
Sbjct: 61  GVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKS 111

Query: 122 MGDKIRVFMYPSNI 136
           MG ++RVFMYPSNI
Sbjct: 121 MGARVRVFMYPSNI 111

The following BLAST results are available for this feature:
BLAST of Lsi01G019680 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LMK04.1e-5070.3760S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=... [more]
Q9C9124.1e-5071.1160S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=... [more]
Q9FZH04.5e-4971.6460S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=... [more]
P514225.9e-4970.9060S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=... [more]
P410561.1e-2344.5360S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
BLAST of Lsi01G019680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HTF71.4e-5381.4860S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111467293 PE... [more]
A0A5A7TGR33.1e-5381.4860S ribosomal protein L35a-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A1S3B4N43.1e-5381.4860S ribosomal protein L35a-1-like OS=Cucumis melo OX=3656 GN=LOC103486112 PE=3 S... [more]
A0A6J1EL437.0e-5380.7460S ribosomal protein L35a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435550 ... [more]
A0A6J1HSC21.7e-5179.2660S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111466132 PE... [more]
BLAST of Lsi01G019680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038883794.11.0e-5382.9660S ribosomal protein L35a-1-like [Benincasa hispida][more]
XP_011653915.11.3e-5382.2260S ribosomal protein L35a-1 [Cucumis sativus] >KAE8649740.1 hypothetical protei... [more]
XP_022967923.12.9e-5381.4860S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022967925.1 60S ribosom... [more]
XP_008442180.16.5e-5381.48PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo] >KAA0041236.1 60S ri... [more]
XP_022928725.11.4e-5280.7460S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022928726.1 60S ribos... [more]
BLAST of Lsi01G019680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07070.12.9e-5170.37Ribosomal protein L35Ae family protein [more]
AT1G74270.12.9e-5171.11Ribosomal protein L35Ae family protein [more]
AT1G41880.13.2e-5071.64Ribosomal protein L35Ae family protein [more]
AT3G55750.14.2e-5070.90Ribosomal protein L35Ae family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038661Ribosomal protein L35A superfamilyGENE3D2.40.10.190translation elongation factor selb, chain A, domain 4coord: 38..135
e-value: 4.8E-42
score: 144.3
IPR001780Ribosomal protein L35APFAMPF01247Ribosomal_L35Aecoord: 46..129
e-value: 1.5E-36
score: 124.4
IPR001780Ribosomal protein L35APANTHERPTHR1090260S RIBOSOMAL PROTEIN L35Acoord: 1..25
IPR001780Ribosomal protein L35APANTHERPTHR1090260S RIBOSOMAL PROTEIN L35Acoord: 45..135
IPR001780Ribosomal protein L35AHAMAPMF_00573Ribosomal_L35Aecoord: 37..129
score: 21.291874
NoneNo IPR availablePANTHERPTHR10902:SF2060S RIBOSOMAL PROTEIN L35A-1coord: 45..135
NoneNo IPR availablePANTHERPTHR10902:SF2060S RIBOSOMAL PROTEIN L35A-1coord: 1..25
IPR018266Ribosomal protein L35Ae, conserved sitePROSITEPS01105RIBOSOMAL_L35AEcoord: 97..118
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 46..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G019680.1Lsi01G019680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006412 translation
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005829 cytosol
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome