Lsi01G018980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G018980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 22304049 .. 22304578 (-)
RNA-Seq ExpressionLsi01G018980
SyntenyLsi01G018980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACAAGTATTTAATTATTTTTTGTACCAACATAAAAAGCTACGTGCTTAAGAACTTTGAATAAATGAGGCTCATACAAGTATCGAAAAAAAAAACAACTACAATTGATTATAATTCATTAATGATATATACTATTTTTTTATTGTCAGTTTGCGCATATAGTTGAGTCTAATATACTGTTGTGTATTGGATTTGGAGCAGACCATCTGACTGGTCCTTTGGGCATGCAAGTTAGGATGGATGAGGCAGGGGTTGGTGCGCTTGCACCCATTCCACTAAGATCAACAGTGGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGGGAAATTGATGATTTAGGTACTTCAACAATAGATTCTTTAGAAGTAGGAATGGTCGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAAGGGTTCTAGAAGTTGCCATGAGTGTGGATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA

mRNA sequence

ATGATACAATTTGCGCATATAGTTGAGTCTAATATACTGTTGTGTATTGGATTTGGAGCAGACCATCTGACTGGTCCTTTGGGCATGCAAGTTAGGATGGATGAGGCAGGGGTTGGTGCGCTTGCACCCATTCCACTAAGATCAACAGTGGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGGGAAATTGATGATTTAGGTACTTCAACAATAGATTCTTTAGAAGTAGGAATGGTCGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAAGGGTTCTAGAAGTTGCCATGAGTGTGGATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA

Coding sequence (CDS)

ATGATACAATTTGCGCATATAGTTGAGTCTAATATACTGTTGTGTATTGGATTTGGAGCAGACCATCTGACTGGTCCTTTGGGCATGCAAGTTAGGATGGATGAGGCAGGGGTTGGTGCGCTTGCACCCATTCCACTAAGATCAACAGTGGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGGGAAATTGATGATTTAGGTACTTCAACAATAGATTCTTTAGAAGTAGGAATGGTCGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAAGGGTTCTAGAAGTTGCCATGAGTGTGGATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA

Protein sequence

MIQFAHIVESNILLCIGFGADHLTGPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREIDVNSLELGGREIDDLGTSTIDSLEVGMVASKVVGACIESRRVLEVAMSVDGEDMIRRKKNVKKNVSY
Homology
BLAST of Lsi01G018980 vs. NCBI nr
Match: KAE8649712.1 (hypothetical protein Csa_012861, partial [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-21
Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 13  LLCIGFGADHLTGPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREIDVNSLELGGRE 72
           +LC+G GADH  GPLG+Q   D AG GALAPIPL S ++NS E+GGREID          
Sbjct: 1   MLCLGLGADHAIGPLGLQSNND-AGNGALAPIPLGSKLINSSEVGGREID---------- 60

Query: 73  IDDLGTSTIDSLEVGMV-ASKVVGACIESRRVLEVAMSVDGEDMIRRKKNVKKNVS 128
            DD GTS IDSL++ MV +S+VVG C +S   L VAM +DGEDM  RKKNVKK  S
Sbjct: 61  DDDSGTSAIDSLKLRMVDSSRVVGGCAKSSMPLVVAMILDGEDMAMRKKNVKKTTS 105

BLAST of Lsi01G018980 vs. NCBI nr
Match: KAG6581979.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 0

Query: 24  TGPLGMQVRMDEAGVGALAPIPLRSTVVNSLELGGREID-------------VNSLELGG 83
           T P G    ++E G+GALAP  L S V    E+GG +ID             V +  L G
Sbjct: 8   TSPKGSGFEVEE-GIGALAPTLLGSEVAKPSEVGGIQIDDLGTSTDVVGAFVVVNGALEG 67

Query: 84  REIDDLG-----TSTIDSLEVGMVASKVVGACIESRRVLEVAMSVDGEDMIRRKKNVKKN 127
            ++D        +S +D+LEVG+VAS VV AC ES   LEVA S + ED ++RKK  ++N
Sbjct: 68  TKLDPFNKKGWRSSAMDALEVGIVASNVVRACTESSMALEVATSEEEEDTVKRKKKNQEN 127

BLAST of Lsi01G018980 vs. NCBI nr
Match: KAE8649705.1 (hypothetical protein Csa_011947, partial [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-06
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 63  VNSLELGGREI--DDLGTSTIDSLEVGMV-ASKVVGACIESRRVLEVAMSVDGEDMIRRK 122
           +NS E+GGREI  DD GTS IDSL++ MV +S+VVG C +S   L VAM ++GEDM  RK
Sbjct: 18  INSSEVGGREIDDDDSGTSAIDSLKLRMVDSSRVVGGCAKSSMPLVVAMILNGEDMAMRK 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8649712.14.7e-2157.76hypothetical protein Csa_012861, partial [Cucumis sativus][more]
KAG6581979.13.9e-0739.67OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita ar... [more]
KAE8649705.15.6e-0659.68hypothetical protein Csa_011947, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G018980.1Lsi01G018980.1mRNA