Lsi01G018560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G018560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein of unknown function (DUF1138)
Location	chr01: 20235983 .. 20237576 (+)
RNA-Seq Expression	Lsi01G018560
Synteny	Lsi01G018560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTATAGGAGTCCTCATGGTTTGCTTGAGATGGCTAATAAGGATTTGCAAGAAAAGGCACCAGATGGAATGTATCTGGTTAATGTTAAGGAACTACTAGGCAATGATATCCTTTCACTAAAAAAATCAGGCAATGATATGGTTAATTTGGATATATATTTCTAAAAGTTCGGACACACCGATGTATCTAGATGCAGGACAAACAAACACTTCAACTCAATTTTTTTTAAAAAAACATTTTTTAATTCGCGCCTTTTACAATGCTTACTGTTGAACCTGTTGCTAGGTAAAACCAAACACTGAAACTTCACCTGGCCCTAAAAAACTTATGAAAGGGAAAAAGAAACCACACTGCTGCTTGTTTCTCCCCTACGAGTTCATCTCACGATGTTAAATTTACATGTTTTTATGTACTTTAGAGTATTAAATGTCAATAGATGCATATTATATTTAAAAATTCATATCTTCAACTTGTTCGCGTCTTACTTTTCTGTTGTAGTTTGTGTTTGTGGTCCTCTTCCTCTTTGTGCACATGTCTGTCTGTGTTCAAGTCCACATTAGGATACTAGCTTTTGGTTCAATATGGGTGCAGTTTGATGTAATTGTGTGTATAGTAGGTCAATTGATTTGGGAACATATTAGTCCATTGCAGTTAGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAAGTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGTAATTACCAGTCATCATCATCATTTGGTTTTGCAGTTTCTTTGATATGCTACTTGCTACCCTTACTTTGCTTTACAGTTTCTTTGATGTGCTACCATTGCTCTATTGTCCTAATTTCTCATTCTTTTTAATGGATTTTGTTCAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAGGCATGGCCTCGTACCGCCGGTCCACCAGTGGTGATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCACTCTGAAGCTTAAATATTACTTTGGTTGTCAAATTTTTACACTTTTGATTGGATCATTCTGCTTTTGGAAGTACATCCTAGTCTAGCAGTTCTAATCTGCCTTCACATTTTGAGTTGTGAACTTGAAGGATTTCTTGTTTGTTGTTCTGATGGCCATTCTTATTTCCTGTTTAAGTTGGCATCATTGGCTTGTTATGTTCAATGGTGACAGGATGTTGATTCTGAATAAATCAGTGAAAAAATAAAACTTCCCTTCATGTCTCTTTCAGACAATGTAAAATGATCATTCTTCTTATTTGCCTGATTTATAAGATCACCAAGCTCTCCATAGTTGTCTCATCTGCTTGTTTGTACAAGGACAATAACTTCTGGAAATTGTTTCCTTAGAATTGCTGCTCAAGTTGGTCTCTTTGGAGCTGTTTGGGGGTTTGTAATGGAATGAGTTTGAATTGTAATGTAGTTTAAAACCCATGTTTGGATTGAGCGTTTTGGATTTGATTTGTAATATTAAACTCGTTTTATTCCGATAATTTTTTATCAAACCCTCTTTCTTTTTC

mRNA sequence

ATGGCCTATAGGAGTCCTCATGGTTTGCTTGAGATGGCTAATAAGGATTTGCAAGAAAAGGCACCAGATGGAATGTATCTGGTTAATGTTAAGGAACTACTAGGCAATGATATCCTTTCACTAAAAAAATCAGGCAATGATATGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAAGTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAGGCATGGCCTCGTACCGCCGGTCCACCAGTGGTGATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCACTCTGAAGCTTAAATATTACTTTGGTTGTCAAATTTTTACACTTTTGATTGGATCATTCTGCTTTTGGAAGTACATCCTAGTCTAGCAGTTCTAATCTGCCTTCACATTTTGAGTTGTGAACTTGAAGGATTTCTTGTTTGTTGTTCTGATGGCCATTCTTATTTCCTGTTTAAGTTGGCATCATTGGCTTGTTATGTTCAATGGTGACAGGATGTTGATTCTGAATAAATCAGTGAAAAAATAAAACTTCCCTTCATGTCTCTTTCAGACAATGTAAAATGATCATTCTTCTTATTTGCCTGATTTATAAGATCACCAAGCTCTCCATAGTTGTCTCATCTGCTTGTTTGTACAAGGACAATAACTTCTGGAAATTGTTTCCTTAGAATTGCTGCTCAAGTTGGTCTCTTTGGAGCTGTTTGGGGGTTTGTAATGGAATGAGTTTGAATTGTAATGTAGTTTAAAACCCATGTTTGGATTGAGCGTTTTGGATTTGATTTGTAATATTAAACTCGTTTTATTCCGATAATTTTTTATCAAACCCTCTTTCTTTTTC

Coding sequence (CDS)

ATGGCCTATAGGAGTCCTCATGGTTTGCTTGAGATGGCTAATAAGGATTTGCAAGAAAAGGCACCAGATGGAATGTATCTGGTTAATGTTAAGGAACTACTAGGCAATGATATCCTTTCACTAAAAAAATCAGGCAATGATATGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAAGTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAGGCATGGCCTCGTACCGCCGGTCCACCAGTGGTGATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCACTCTGAAGCTTAA

Protein sequence

MAYRSPHGLLEMANKDLQEKAPDGMYLVNVKELLGNDILSLKKSGNDMKMAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTHSEA

Homology

[Close]

BLAST of Lsi01G018560 vs. ExPASy TrEMBL
Match: A0A5A7UM13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00430 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.1e-34
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA+AVAYI DHL++DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKT 126
           PVVMNPISRQNFIVK+
Sbjct: 61  PVVMNPISRQNFIVKS 76

[Close]

BLAST of Lsi01G018560 vs. ExPASy TrEMBL
Match: A0A1S3CSQ7 (uncharacterized protein LOC103504527 OS=Cucumis melo OX=3656 GN=LOC103504527 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.1e-34
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA+AVAYI DHL++DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKT 126
           PVVMNPISRQNFIVK+
Sbjct: 61  PVVMNPISRQNFIVKS 76

[Close]

BLAST of Lsi01G018560 vs. ExPASy TrEMBL
Match: A0A6J1HPI7 (uncharacterized protein LOC111466138 OS=Cucurbita maxima OX=3661 GN=LOC111466138 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.7e-33
Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKY+  SL+G  A+AYI+D+LV+DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVKT SEA
Sbjct: 61  PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of Lsi01G018560 vs. ExPASy TrEMBL
Match: A0A0A0KYC7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166930 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA  VAYI DHL++DKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVKT  E+
Sbjct: 61  PVVMNPISRQNFIVKTRPES 80

[Close]

BLAST of Lsi01G018560 vs. ExPASy TrEMBL
Match: A0A5J4ZM71 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015655 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.2e-32
Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 39  LSLKKSGNDMKMAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDK 98
           LSL    + + MA KYI+ SL+G+ A+A+  D+++ADKKIFGGTTPSTVSN EWWEETDK
Sbjct: 54  LSLSAIPSRLNMATKYIISSLVGSFALAFACDYIIADKKIFGGTTPSTVSNKEWWEETDK 113

Query: 99  KFQAWPRTAGPPVVMNPISRQNFIVKTHSEA 130
           KFQAWPRTAGPPVVMNPISRQNFIVK+HSEA
Sbjct: 114 KFQAWPRTAGPPVVMNPISRQNFIVKSHSEA 144

[Close]

BLAST of Lsi01G018560 vs. NCBI nr
Match: XP_038883759.1 (uncharacterized protein LOC120074644 [Benincasa hispida] >XP_038883760.1 uncharacterized protein LOC120074644 [Benincasa hispida])

HSP 1 Score: 157.5 bits (397), Expect = 7.6e-35
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA+A+AYISDHL+ADKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGATALAYISDHLIADKKIFGGTTPSTVSNREWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVK  SEA
Sbjct: 61  PVVMNPISRQNFIVKARSEA 80

[Close]

BLAST of Lsi01G018560 vs. NCBI nr
Match: XP_008467091.1 (PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo] >KAA0043508.1 uncharacterized protein E6C27_scaffold335G00010 [Cucumis melo var. makuwa] >KAA0056128.1 uncharacterized protein E6C27_scaffold697G00060 [Cucumis melo var. makuwa] >TYK02516.1 uncharacterized protein E5676_scaffold784G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-33
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA+AVAYI DHL++DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKT 126
           PVVMNPISRQNFIVK+
Sbjct: 61  PVVMNPISRQNFIVKS 76

[Close]

BLAST of Lsi01G018560 vs. NCBI nr
Match: XP_038876294.1 (uncharacterized protein LOC120068549 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 7.1e-33
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA+A AYISD L+ADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGATAFAYISD-LIADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVV+NPISRQNFIVK H+EA
Sbjct: 61  PVVVNPISRQNFIVKAHTEA 79

[Close]

BLAST of Lsi01G018560 vs. NCBI nr
Match: XP_022966506.1 (uncharacterized protein LOC111466138 [Cucurbita maxima])

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32
Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKY+  SL+G  A+AYI+D+LV+DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVKT SEA
Sbjct: 61  PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of Lsi01G018560 vs. NCBI nr
Match: XP_004149394.1 (uncharacterized protein LOC101213065 [Cucumis sativus] >XP_011653428.1 uncharacterized protein LOC101213065 [Cucumis sativus] >XP_011653429.1 uncharacterized protein LOC101213065 [Cucumis sativus] >XP_031739913.1 uncharacterized protein LOC101213065 [Cucumis sativus] >KGN53849.1 hypothetical protein Csa_019165 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 2.7e-32
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA  VAYI DHL++DKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVKT  E+
Sbjct: 61  PVVMNPISRQNFIVKTRPES 80

[Close]

BLAST of Lsi01G018560 vs. TAIR 10
Match: AT1G01170.1 (Protein of unknown function (DUF1138) )

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-30
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 52  AKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 111
           AKYI+G+L+G+  ++YI D +++D KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPV
Sbjct: 7   AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 112 VMNPISRQNFIVKTHSE 129
           VMNPISRQNFIVKT  E
Sbjct: 67  VMNPISRQNFIVKTRPE 83

[Close]

BLAST of Lsi01G018560 vs. TAIR 10
Match: AT1G01170.2 (Protein of unknown function (DUF1138) )

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-30
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 52  AKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 111
           AKYI+G+L+G+  ++YI D +++D KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPV
Sbjct: 7   AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 112 VMNPISRQNFIVKTHSE 129
           VMNPISRQNFIVKT  E
Sbjct: 67  VMNPISRQNFIVKTRPE 83

[Close]

BLAST of Lsi01G018560 vs. TAIR 10
Match: AT4G00860.1 (Protein of unknown function (DUF1138) )

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-25
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 52  AKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 111
           A YI+G+L G++ VAY+ D +++D K+FGGTTP T++N EW   T+++ QAWPR AGPPV
Sbjct: 4   ATYIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPV 63

Query: 112 VMNPISRQNFIVKTHSE 129
           VMNPISRQNFIVK+  E
Sbjct: 64  VMNPISRQNFIVKSRPE 80

The following BLAST results are available for this feature:

BLAST of Lsi01G018560 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G018560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UM13	9.1e-34	93.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CSQ7	9.1e-34	93.42	uncharacterized protein LOC103504527 OS=Cucumis melo OX=3656 GN=LOC103504527 PE=...	[more]
A0A6J1HPI7	7.7e-33	86.25	uncharacterized protein LOC111466138 OS=Cucurbita maxima OX=3661 GN=LOC111466138...	[more]
A0A0A0KYC7	1.3e-32	88.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166930 PE=4 SV=1	[more]
A0A5J4ZM71	2.2e-32	74.73	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015655 PE=4 SV=1	[more]

BLAST of Lsi01G018560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883759.1	7.6e-35	92.50	uncharacterized protein LOC120074644 [Benincasa hispida] >XP_038883760.1 unchara...	[more]
XP_008467091.1	1.9e-33	93.42	PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo] >KAA0043508.1 unc...	[more]
XP_038876294.1	7.1e-33	91.25	uncharacterized protein LOC120068549 [Benincasa hispida]	[more]
XP_022966506.1	1.6e-32	86.25	uncharacterized protein LOC111466138 [Cucurbita maxima]	[more]
XP_004149394.1	2.7e-32	88.75	uncharacterized protein LOC101213065 [Cucumis sativus] >XP_011653428.1 uncharact...	[more]

BLAST of Lsi01G018560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01170.1	3.5e-30	72.73	Protein of unknown function (DUF1138)	[more]
AT1G01170.2	3.5e-30	72.73	Protein of unknown function (DUF1138)	[more]
AT4G00860.1	4.4e-25	61.04	Protein of unknown function (DUF1138)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009515	Protein of unknown function DUF1138	PFAM	PF06592	DUF1138	coord: 52..124 e-value: 1.1E-42 score: 143.9
IPR009515	Protein of unknown function DUF1138	PANTHER	PTHR34267	OS11G0161033 PROTEIN	coord: 50..127
None	No IPR available	PANTHER	PTHR34267:SF1	OS11G0161033 PROTEIN	coord: 50..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018560.1	Lsi01G018560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane