Lsi01G015680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G015680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein of unknown function (DUF688)
Location	chr01: 13910085 .. 13910663 (+)
RNA-Seq Expression	Lsi01G015680
Synteny	Lsi01G015680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATACCAAGATGATGAACGCCAAACCTATGGCCATGCCCACCACCATATTGATCGGAAACTAAACTTCAATGCCCCCCTTTTGACCACTCGCCGCCCCGCTGCCAATGTTGGTCTCGATCGTCTGAGTATCCCTGGCTCTGCTCGAATATCGTCGTCGACGACTAGTGATAGAGTTCCATTTTGTTGGGAGCAAGCTCCGGGTAGGCCAAAGGAGTACGTTGAGAGATGTCACGATACTACTCACGGTGACGACGCCACCACTCCCCGTCCTACACTTCCACCTGGATGGTGGCGGCCGCCTATTCAAACAAGTAGGGTTTATGAACTTTTTCGAGATGATAGATTATATTATTTTGAATTGTGTAGTTAGGTTATGAATTTAGTTGCAATTTCATTTCCTAGTTTTGAAATTTCGTTGGTAGGATTTAAACTTAATTTCAATTTTGTTGTTTCTAGTATTTTAAAGTTTTAGATGTACAGTTTAGTATTTAAAACTCGTAAATGGTCTCACGATATTGACATATTTATGTACGCCATAACAACTCGTGAGCTCATATTAGGATTTATAGTTTAG

mRNA sequence

ATGGAATACCAAGATGATGAACGCCAAACCTATGGCCATGCCCACCACCATATTGATCGGAAACTAAACTTCAATGCCCCCCTTTTGACCACTCGCCGCCCCGCTGCCAATGTTGGTCTCGATCGTCTGAGTATCCCTGGCTCTGCTCGAATATCGTCGTCGACGACTAGTGATAGAGTTCCATTTTGTTGGGAGCAAGCTCCGGGTAGGCCAAAGGAGTACGTTGAGAGATGTCACGATACTACTCACGGTGACGACGCCACCACTCCCCGTCCTACACTTCCACCTGGATGGTGGCGGCCGCCTATTCAAACAAGTAGGATGTACAGTTTAGTATTTAAAACTCGTAAATGGTCTCACGATATTGACATATTTATGTACGCCATAACAACTCGTGAGCTCATATTAGGATTTATAGTTTAG

Coding sequence (CDS)

ATGGAATACCAAGATGATGAACGCCAAACCTATGGCCATGCCCACCACCATATTGATCGGAAACTAAACTTCAATGCCCCCCTTTTGACCACTCGCCGCCCCGCTGCCAATGTTGGTCTCGATCGTCTGAGTATCCCTGGCTCTGCTCGAATATCGTCGTCGACGACTAGTGATAGAGTTCCATTTTGTTGGGAGCAAGCTCCGGGTAGGCCAAAGGAGTACGTTGAGAGATGTCACGATACTACTCACGGTGACGACGCCACCACTCCCCGTCCTACACTTCCACCTGGATGGTGGCGGCCGCCTATTCAAACAAGTAGGATGTACAGTTTAGTATTTAAAACTCGTAAATGGTCTCACGATATTGACATATTTATGTACGCCATAACAACTCGTGAGCTCATATTAGGATTTATAGTTTAG

Protein sequence

MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRVPFCWEQAPGRPKEYVERCHDTTHGDDATTPRPTLPPGWWRPPIQTSRMYSLVFKTRKWSHDIDIFMYAITTRELILGFIV

Homology

[Close]

BLAST of Lsi01G015680 vs. ExPASy TrEMBL
Match: A0A0A0KY11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312800 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.3e-45
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRV 60
           ME+QDD+RQ+Y   HHHI RKLNFNAPLLTTRRPAANV LDRLSI GSARIS STTSDRV
Sbjct: 1   MEHQDDDRQSY--VHHHIARKLNFNAPLLTTRRPAANVDLDRLSISGSARISLSTTSDRV 60

Query: 61  PFCWEQAPGRPKEYVERCHDTTHGDDATTPRPTLPPGWWRPPIQTSR 108
           PFCWEQAPG+PKEYVERCH   HG DA TPRPTLPPGWWRPP+QT R
Sbjct: 61  PFCWEQAPGKPKEYVERCHAAAHGGDAITPRPTLPPGWWRPPVQTRR 105

[Close]

BLAST of Lsi01G015680 vs. ExPASy TrEMBL
Match: A0A5A7T2N8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00280 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.8e-44
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRV 60
           ME+QDD+R +YG  HHHI RKLNFNAPLLTTRRPAANV LDR+S+ GS RIS STTSDRV
Sbjct: 1   MEHQDDDRHSYG--HHHIARKLNFNAPLLTTRRPAANVDLDRVSVSGSVRISLSTTSDRV 60

Query: 61  PFCWEQAPGRPKEYVERCHDTT-HGDDATTPRPTLPPGWWRPPIQTSR 108
           PFCWEQAPG+PKEY ERCHD+  HG DATTPRPTLPPGWWRPP+QT R
Sbjct: 61  PFCWEQAPGKPKEYAERCHDSADHGGDATTPRPTLPPGWWRPPVQTRR 106

[Close]

BLAST of Lsi01G015680 vs. ExPASy TrEMBL
Match: A0A1S3CKZ5 (uncharacterized protein LOC103502152 OS=Cucumis melo OX=3656 GN=LOC103502152 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.8e-44
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRV 60
           ME+QDD+R +YG  HHHI RKLNFNAPLLTTRRPAANV LDR+S+ GS RIS STTSDRV
Sbjct: 1   MEHQDDDRHSYG--HHHIARKLNFNAPLLTTRRPAANVDLDRVSVSGSVRISLSTTSDRV 60

Query: 61  PFCWEQAPGRPKEYVERCHDTT-HGDDATTPRPTLPPGWWRPPIQTSR 108
           PFCWEQAPG+PKEY ERCHD+  HG DATTPRPTLPPGWWRPP+QT R
Sbjct: 61  PFCWEQAPGKPKEYAERCHDSADHGGDATTPRPTLPPGWWRPPVQTRR 106

[Close]

BLAST of Lsi01G015680 vs. ExPASy TrEMBL
Match: A0A5D3CL22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00080 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.0e-44
Identity = 86/108 (79.63%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRV 60
           ME+QDD+R +YG  HHHI RKLNFNAPLLTTRRPAANV LDR+S+ GS RIS STTSDRV
Sbjct: 1   MEHQDDDRHSYG--HHHIARKLNFNAPLLTTRRPAANVDLDRVSVSGSVRISLSTTSDRV 60

Query: 61  PFCWEQAPGRPKEYVERCHDTT-HGDDATTPRPTLPPGWWRPPIQTSR 108
           PFCWEQAPG+PKEY ERCHD   HG D+TTPRPTLPPGWWRPP+QT R
Sbjct: 61  PFCWEQAPGKPKEYAERCHDAVDHGGDSTTPRPTLPPGWWRPPVQTRR 106

[Close]

BLAST of Lsi01G015680 vs. ExPASy TrEMBL
Match: A0A6J1ITM5 (uncharacterized protein LOC111478304 OS=Cucurbita maxima OX=3661 GN=LOC111478304 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.3e-35
Identity = 76/106 (71.70%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAA-NVGLDRLSIPGSARISSSTTSDR 60
           ME+  D  Q   + HHHI RKLNFNAPLLTTRRPAA NVG+ RLSI G      STTSDR
Sbjct: 1   MEHDHDHDQRRSYGHHHIARKLNFNAPLLTTRRPAASNVGIGRLSISG------STTSDR 60

Query: 61  VPFCWEQAPGRPKEYVERCHDTTHGDDATTPRPTLPPGWWRPPIQT 106
           VPFCWEQAPG+PK+YVERCHD  +   ATTPRPTLPP WWRPPIQT
Sbjct: 61  VPFCWEQAPGKPKDYVERCHDVVYDSSATTPRPTLPPRWWRPPIQT 100

[Close]

BLAST of Lsi01G015680 vs. NCBI nr
Match: XP_011654375.1 (uncharacterized protein LOC105435371 [Cucumis sativus] >KGN54398.1 hypothetical protein Csa_018072 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 6.7e-45
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRV 60
           ME+QDD+RQ+Y   HHHI RKLNFNAPLLTTRRPAANV LDRLSI GSARIS STTSDRV
Sbjct: 1   MEHQDDDRQSY--VHHHIARKLNFNAPLLTTRRPAANVDLDRLSISGSARISLSTTSDRV 60

Query: 61  PFCWEQAPGRPKEYVERCHDTTHGDDATTPRPTLPPGWWRPPIQTSR 108
           PFCWEQAPG+PKEYVERCH   HG DA TPRPTLPPGWWRPP+QT R
Sbjct: 61  PFCWEQAPGKPKEYVERCHAAAHGGDAITPRPTLPPGWWRPPVQTRR 105

[Close]

BLAST of Lsi01G015680 vs. NCBI nr
Match: XP_038883247.1 (uncharacterized protein LOC120074256 [Benincasa hispida])

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-44
Identity = 89/107 (83.18%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRV 60
           ME+QDDERQ   HAHHHI RKLNFNAPLLTTRRP ANVGLDRLSI  +ARISSSTTSDRV
Sbjct: 5   MEHQDDERQI--HAHHHIARKLNFNAPLLTTRRPPANVGLDRLSISTAARISSSTTSDRV 64

Query: 61  PFCWEQAPGRPKEYVERCHDTTHGDDATTPRPTLPPGWWRPPIQTSR 108
           PFCWEQ PG+PKEYVERCH + H  D TTPRPTLPPGWWRPPIQT R
Sbjct: 65  PFCWEQVPGKPKEYVERCHGSAHESDVTTPRPTLPPGWWRPPIQTRR 109

[Close]

BLAST of Lsi01G015680 vs. NCBI nr
Match: XP_008464220.1 (PREDICTED: uncharacterized protein LOC103502152 [Cucumis melo] >KAA0037732.1 uncharacterized protein E6C27_scaffold141G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 5.7e-44
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRV 60
           ME+QDD+R +YG  HHHI RKLNFNAPLLTTRRPAANV LDR+S+ GS RIS STTSDRV
Sbjct: 1   MEHQDDDRHSYG--HHHIARKLNFNAPLLTTRRPAANVDLDRVSVSGSVRISLSTTSDRV 60

Query: 61  PFCWEQAPGRPKEYVERCHDTT-HGDDATTPRPTLPPGWWRPPIQTSR 108
           PFCWEQAPG+PKEY ERCHD+  HG DATTPRPTLPPGWWRPP+QT R
Sbjct: 61  PFCWEQAPGKPKEYAERCHDSADHGGDATTPRPTLPPGWWRPPVQTRR 106

[Close]

BLAST of Lsi01G015680 vs. NCBI nr
Match: TYK10929.1 (uncharacterized protein E5676_scaffold107G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-43
Identity = 86/108 (79.63%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MEYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRV 60
           ME+QDD+R +YG  HHHI RKLNFNAPLLTTRRPAANV LDR+S+ GS RIS STTSDRV
Sbjct: 1   MEHQDDDRHSYG--HHHIARKLNFNAPLLTTRRPAANVDLDRVSVSGSVRISLSTTSDRV 60

Query: 61  PFCWEQAPGRPKEYVERCHDTT-HGDDATTPRPTLPPGWWRPPIQTSR 108
           PFCWEQAPG+PKEY ERCHD   HG D+TTPRPTLPPGWWRPP+QT R
Sbjct: 61  PFCWEQAPGKPKEYAERCHDAVDHGGDSTTPRPTLPPGWWRPPVQTRR 106

[Close]

BLAST of Lsi01G015680 vs. NCBI nr
Match: XP_023545068.1 (uncharacterized protein LOC111804477 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.2 bits (409), Expect = 3.3e-36
Identity = 76/104 (73.08%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 2   EYQDDERQTYGHAHHHIDRKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRVP 61
           ++  D+R++YG  HHHI RKLNFNAPLLTTRRPAANVG+ RLSI G      STTSDRVP
Sbjct: 8   DHDHDQRRSYG--HHHIARKLNFNAPLLTTRRPAANVGIGRLSISG------STTSDRVP 67

Query: 62  FCWEQAPGRPKEYVERCHDTTHGDDATTPRPTLPPGWWRPPIQT 106
           FCWEQAPG+PK+YVERCHD  +   ATTPRPTLPP WWRPPIQT
Sbjct: 68  FCWEQAPGKPKDYVERCHDVVYDSSATTPRPTLPPRWWRPPIQT 103

[Close]

BLAST of Lsi01G015680 vs. TAIR 10
Match: AT3G51760.1 (Protein of unknown function (DUF688) )

HSP 1 Score: 52.4 bits (124), Expect = 3.5e-07
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 20 RKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRVPFCWEQAPGRPKEYVERCH 79
          R+LNFNAP L+T+R      + +  +PG    +S      VPFCWE APG PK      +
Sbjct: 17 RRLNFNAPFLSTKR-----HVTQEKLPGQFPEAS------VPFCWETAPGMPKNSSHLKN 76

Query: 80 DTTHGDDATTPRPTLPPG 98
          D     ++ TPR  LPPG
Sbjct: 77 DA----ESETPRLKLPPG 79

[Close]

BLAST of Lsi01G015680 vs. TAIR 10
Match: AT3G51760.2 (Protein of unknown function (DUF688) )

HSP 1 Score: 52.4 bits (124), Expect = 3.5e-07
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 20 RKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRVPFCWEQAPGRPKEYVERCH 79
          R+LNFNAP L+T+R      + +  +PG    +S      VPFCWE APG PK      +
Sbjct: 17 RRLNFNAPFLSTKR-----HVTQEKLPGQFPEAS------VPFCWETAPGMPKNSSHLKN 76

Query: 80 DTTHGDDATTPRPTLPPG 98
          D     ++ TPR  LPPG
Sbjct: 77 DA----ESETPRLKLPPG 79

[Close]

BLAST of Lsi01G015680 vs. TAIR 10
Match: AT3G51760.4 (Protein of unknown function (DUF688) )

HSP 1 Score: 52.4 bits (124), Expect = 3.5e-07
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 20 RKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRVPFCWEQAPGRPKEYVERCH 79
          R+LNFNAP L+T+R      + +  +PG    +S      VPFCWE APG PK      +
Sbjct: 8  RRLNFNAPFLSTKR-----HVTQEKLPGQFPEAS------VPFCWETAPGMPKNSSHLKN 67

Query: 80 DTTHGDDATTPRPTLPPG 98
          D     ++ TPR  LPPG
Sbjct: 68 DA----ESETPRLKLPPG 70

[Close]

BLAST of Lsi01G015680 vs. TAIR 10
Match: AT3G51760.3 (Protein of unknown function (DUF688) )

HSP 1 Score: 52.4 bits (124), Expect = 3.5e-07
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 20 RKLNFNAPLLTTRRPAANVGLDRLSIPGSARISSSTTSDRVPFCWEQAPGRPKEYVERCH 79
          R+LNFNAP L+T+R      + +  +PG    +S      VPFCWE APG PK      +
Sbjct: 8  RRLNFNAPFLSTKR-----HVTQEKLPGQFPEAS------VPFCWETAPGMPKNSSHLKN 67

Query: 80 DTTHGDDATTPRPTLPPG 98
          D     ++ TPR  LPPG
Sbjct: 68 DA----ESETPRLKLPPG 70

[Close]

BLAST of Lsi01G015680 vs. TAIR 10
Match: AT1G71970.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 8.0e-04
Identity = 22/57 (38.60%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 43  LSIPGSARISSSTTSDR---VPFCWEQAPGRPKEYVERCHDTTHGDDATTPRPTLPP 97
           L  PG + ++S  T  R   VPF WEQ PG+PK+Y  R ++  + + +    P LPP
Sbjct: 47  LVFPGDSPLNSPATPLRLLGVPFSWEQLPGKPKDYSHRLNNRRNNESSNLLLP-LPP 102

The following BLAST results are available for this feature:

BLAST of Lsi01G015680 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G015680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY11	3.3e-45	83.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312800 PE=4 SV=1	[more]
A0A5A7T2N8	2.8e-44	80.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CKZ5	2.8e-44	80.56	uncharacterized protein LOC103502152 OS=Cucumis melo OX=3656 GN=LOC103502152 PE=...	[more]
A0A5D3CL22	8.0e-44	79.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1ITM5	2.3e-35	71.70	uncharacterized protein LOC111478304 OS=Cucurbita maxima OX=3661 GN=LOC111478304...	[more]

BLAST of Lsi01G015680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654375.1	6.7e-45	83.18	uncharacterized protein LOC105435371 [Cucumis sativus] >KGN54398.1 hypothetical ...	[more]
XP_038883247.1	2.0e-44	83.18	uncharacterized protein LOC120074256 [Benincasa hispida]	[more]
XP_008464220.1	5.7e-44	80.56	PREDICTED: uncharacterized protein LOC103502152 [Cucumis melo] >KAA0037732.1 unc...	[more]
TYK10929.1	1.7e-43	79.63	uncharacterized protein E5676_scaffold107G00080 [Cucumis melo var. makuwa]	[more]
XP_023545068.1	3.3e-36	73.08	uncharacterized protein LOC111804477 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G015680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51760.1	3.5e-07	41.03	Protein of unknown function (DUF688)	[more]
AT3G51760.2	3.5e-07	41.03	Protein of unknown function (DUF688)	[more]
AT3G51760.4	3.5e-07	41.03	Protein of unknown function (DUF688)	[more]
AT3G51760.3	3.5e-07	41.03	Protein of unknown function (DUF688)	[more]
AT1G71970.1	8.0e-04	38.60	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007789	Protein of unknown function DUF688	PFAM	PF05097	DUF688	coord: 19..103 e-value: 4.2E-7 score: 29.5
None	No IPR available	PANTHER	PTHR33671:SF1	BNAC07G32500D PROTEIN	coord: 15..106
None	No IPR available	PANTHER	PTHR33671	N-METHYLTRANSFERASE, PUTATIVE (DUF688)-RELATED	coord: 15..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G015680.1	Lsi01G015680.1	mRNA