Lsi01G015640 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G015640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	BHLH domain-containing protein
Location	chr01: 13843113 .. 13843727 (-)
RNA-Seq Expression	Lsi01G015640
Synteny	Lsi01G015640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTACAACTTTCCGGCGAGCAACCCCAGCTCGTGTGGTTCATCCTCCGGCGACGGCGGCGGCGGCGAAAAGGAGAAGATGAAAAAGAACAACAACAACAACAACAACAACAACGGCGGAGGGAAGAGGAGCAAAGGGGTTGTGAAGTTATCAACAGACCCACAAAGCGTGGCGGCGAGAGAACGGCGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAGAGCTTAGTTCCCGGTGGCACTAAAATGGACACCGTTTCAATGCTTGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACTATGATTAATTTCGTTGATTATGATACTTCTTCTGCCGCCACCGCCACCGCCTCCGCCGTCGCTGCTGCCAATTCCGGTCTCCCTTTTGACCAAATTGCCGTCGGCGAGTATAATAATATGAACAACAACATGAATTTTCTCTACCCTCAAAACGACGTCGTTAAAATGGAGGAGCCTTTCTTGCCTCAGCTTGATCCCAACAACAACAACAACAATAATAATCTTTATTTCCCTTCTGATCAAGATCAATTCATCTCCTCTTCTTATGATCCTTACATCAACTTGTAG

mRNA sequence

ATGGATTACAACTTTCCGGCGAGCAACCCCAGCTCGTGTGGTTCATCCTCCGGCGACGGCGGCGGCGGCGAAAAGGAGAAGATGAAAAAGAACAACAACAACAACAACAACAACAACGGCGGAGGGAAGAGGAGCAAAGGGGTTGTGAAGTTATCAACAGACCCACAAAGCGTGGCGGCGAGAGAACGGCGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAGAGCTTAGTTCCCGGTGGCACTAAAATGGACACCGTTTCAATGCTTGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACTATGATTAATTTCGTTGATTATGATACTTCTTCTGCCGCCACCGCCACCGCCTCCGCCGTCGCTGCTGCCAATTCCGGTCTCCCTTTTGACCAAATTGCCGTCGGCGAGTATAATAATATGAACAACAACATGAATTTTCTCTACCCTCAAAACGACGTCGTTAAAATGGAGGAGCCTTTCTTGCCTCAGCTTGATCCCAACAACAACAACAACAATAATAATCTTTATTTCCCTTCTGATCAAGATCAATTCATCTCCTCTTCTTATGATCCTTACATCAACTTGTAG

Coding sequence (CDS)

ATGGATTACAACTTTCCGGCGAGCAACCCCAGCTCGTGTGGTTCATCCTCCGGCGACGGCGGCGGCGGCGAAAAGGAGAAGATGAAAAAGAACAACAACAACAACAACAACAACAACGGCGGAGGGAAGAGGAGCAAAGGGGTTGTGAAGTTATCAACAGACCCACAAAGCGTGGCGGCGAGAGAACGGCGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAGAGCTTAGTTCCCGGTGGCACTAAAATGGACACCGTTTCAATGCTTGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACTATGATTAATTTCGTTGATTATGATACTTCTTCTGCCGCCACCGCCACCGCCTCCGCCGTCGCTGCTGCCAATTCCGGTCTCCCTTTTGACCAAATTGCCGTCGGCGAGTATAATAATATGAACAACAACATGAATTTTCTCTACCCTCAAAACGACGTCGTTAAAATGGAGGAGCCTTTCTTGCCTCAGCTTGATCCCAACAACAACAACAACAATAATAATCTTTATTTCCCTTCTGATCAAGATCAATTCATCTCCTCTTCTTATGATCCTTACATCAACTTGTAG

Protein sequence

MDYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDTSSAATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEPFLPQLDPNNNNNNNNLYFPSDQDQFISSSYDPYINL

Homology

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BLAST of Lsi01G015640 vs. ExPASy Swiss-Prot
Match: Q9M041 (Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 2   DYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAAR 61
           D+N  + NP+S  ++S       + K         +  G  KRS+    LSTDPQSVAAR
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHK---------SETGNTKRSRSTSTLSTDPQSVAAR 62

Query: 62  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFV-DYDTSS 121
           +RRHRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F+ D++T+S
Sbjct: 63  DRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTS 121

Query: 122 AATATASA 129
           + T +  A
Sbjct: 123 SCTYSPGA 121

[Close]

BLAST of Lsi01G015640 vs. ExPASy Swiss-Prot
Match: Q7XAQ6 (Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX1 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.6e-24
Identity = 61/100 (61.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 40  GGGKRSKGVVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKF 99
           GGG+R  G  KLSTDPQSVAARERRHRISDRF++L+SLVPGG+KMDTVSML++AIHYVKF
Sbjct: 30  GGGRRRPG-AKLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKF 89

Query: 100 LKTQIWLHQTMINFVDYDTSSAATATASAVAAANSGLPFD 140
           LK Q+ LHQ  +  V ++        A+A +AA++ L  +
Sbjct: 90  LKAQVTLHQAAL--VQHEEGCQHADVAAAFSAADADLALE 126

[Close]

BLAST of Lsi01G015640 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 49  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 105
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of Lsi01G015640 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.3e-17
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 49  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWL 107
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180

[Close]

BLAST of Lsi01G015640 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-16
Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 28  MKKNNNNNNNNNGGGKRS-------------------------KGVVKLSTDPQSVAARE 87
           + K NN+NNNNNG    +                         +  V++S DPQSVAAR 
Sbjct: 80  LDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARH 139

Query: 88  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 105
           RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 140 RRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of Lsi01G015640 vs. ExPASy TrEMBL
Match: A0A0A0KXM0 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.9e-82
Identity = 175/205 (85.37%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAA 60
           MDYNFPASNPSSCGSSSG GGGG KEKMKK   NNNN+ G GKRSKGVVKLSTDPQSVAA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKK---NNNNHGGAGKRSKGVVKLSTDPQSVAA 60

Query: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDTSS 120
           RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD++S
Sbjct: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNS 120

Query: 121 AATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNN 180
             +A  SA A ANSG PF+QIA GEYNNMN   N LYPQNDVVKMEEP FLPQLDP   N
Sbjct: 121 --SAAVSAAATANSGFPFEQIASGEYNNMN---NLLYPQNDVVKMEEPNFLPQLDP---N 180

Query: 181 NNNNLYFPSD-QDQFISSSYDPYIN 204
           NNNN+YFPSD QDQFISSSYDPYIN
Sbjct: 181 NNNNVYFPSDHQDQFISSSYDPYIN 194

[Close]

BLAST of Lsi01G015640 vs. ExPASy TrEMBL
Match: A0A5A7T6E1 (HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00320 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.0e-81
Identity = 175/205 (85.37%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAA 60
           MDYNFPASNPSSCGSSSG GGG  KEKMKK  NNNNN+ G GKRSKGVVKLSTDPQSVAA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGG--KEKMKK--NNNNNHGGAGKRSKGVVKLSTDPQSVAA 60

Query: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDTSS 120
           RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD++S
Sbjct: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNS 120

Query: 121 AATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNN 180
             +A  SA A ANSG PF+QIA GEYNNMN   N LYPQNDVVKMEEP FLPQLDP   N
Sbjct: 121 --SAAVSAAATANSGFPFEQIASGEYNNMN---NLLYPQNDVVKMEEPNFLPQLDP---N 180

Query: 181 NNNNLYFPSD-QDQFISSSYDPYIN 204
           NNNN+YFPSD QDQFISSSYDPYIN
Sbjct: 181 NNNNVYFPSDHQDQFISSSYDPYIN 193

[Close]

BLAST of Lsi01G015640 vs. ExPASy TrEMBL
Match: A0A5D3CHB0 (HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00040 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.0e-79
Identity = 173/203 (85.22%), Postives = 179/203 (88.18%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAA 60
           MDYNFPASNPSSCGSSSG GGG  KEKMKK  NNNNN+ G GKRSKGVVKLSTDPQSVAA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGG--KEKMKK--NNNNNHGGAGKRSKGVVKLSTDPQSVAA 60

Query: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDTSS 120
           RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD++S
Sbjct: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNS 120

Query: 121 AATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNN 180
             +A  SA A ANSG PF+QIA GEYNNMN   N LYPQNDVVKMEEP FLPQLDP   N
Sbjct: 121 --SAAVSAAATANSGFPFEQIASGEYNNMN---NLLYPQNDVVKMEEPNFLPQLDP---N 180

Query: 181 NNNNLYFPSD-QDQFISSSYDPY 202
           NNNN+YFPSD QDQFISSSYDPY
Sbjct: 181 NNNNVYFPSDHQDQFISSSYDPY 191

[Close]

BLAST of Lsi01G015640 vs. ExPASy TrEMBL
Match: A0A6J1EVF6 (transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.2e-67
Identity = 154/207 (74.40%), Postives = 168/207 (81.16%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDG--GGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSV 60
           MDY FPASNPSSCGSSSG    G   KEK+KK    N++ + GGKRSKGVVKLSTDPQSV
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKK----NSSGSCGGKRSKGVVKLSTDPQSV 60

Query: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDT 120
           AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD 
Sbjct: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120

Query: 121 SSAATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP--FLPQLDPN 180
           SS +TA A+AV   N G  FDQIA GE++N N+  +F+Y QNDVVKMEEP   LPQLDP 
Sbjct: 121 SSNSTAAAAAV---NCGFHFDQIAGGEFHN-NDTNSFVYSQNDVVKMEEPPNLLPQLDP- 180

Query: 181 NNNNNNNLYFPSDQDQFISSSYDPYIN 204
                NNLYFPS QDQ++ SSYDPY+N
Sbjct: 181 -----NNLYFPSGQDQYMCSSYDPYMN 193

[Close]

BLAST of Lsi01G015640 vs. ExPASy TrEMBL
Match: A0A6J1HPK4 (transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466180 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.9e-66
Identity = 152/207 (73.43%), Postives = 167/207 (80.68%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDG--GGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSV 60
           MDYNFPASNPSSCGSSSG        KEK+KK    N++ + GGKRSKGVVKLSTDPQSV
Sbjct: 1   MDYNFPASNPSSCGSSSGGATTEATRKEKLKK----NSSGSCGGKRSKGVVKLSTDPQSV 60

Query: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDT 120
           AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD 
Sbjct: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120

Query: 121 SSAATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP--FLPQLDPN 180
           SS +TA  +A AA N G  F+QIA GE++N N+  +F+Y QNDVVKMEEP   LPQLDP 
Sbjct: 121 SSNSTAAVTA-AAVNCGFHFNQIAGGEFHN-NDTNSFVYSQNDVVKMEEPPNLLPQLDP- 180

Query: 181 NNNNNNNLYFPSDQDQFISSSYDPYIN 204
                NNLYFPS QDQ++ SSYD Y+N
Sbjct: 181 -----NNLYFPSGQDQYMCSSYDAYMN 195

[Close]

BLAST of Lsi01G015640 vs. NCBI nr
Match: XP_031739731.1 (transcription factor bHLH140 [Cucumis sativus] >KGN54395.1 hypothetical protein Csa_018056 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 1.0e-81
Identity = 175/205 (85.37%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAA 60
           MDYNFPASNPSSCGSSSG GGGG KEKMKK   NNNN+ G GKRSKGVVKLSTDPQSVAA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKK---NNNNHGGAGKRSKGVVKLSTDPQSVAA 60

Query: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDTSS 120
           RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD++S
Sbjct: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNS 120

Query: 121 AATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNN 180
             +A  SA A ANSG PF+QIA GEYNNMN   N LYPQNDVVKMEEP FLPQLDP   N
Sbjct: 121 --SAAVSAAATANSGFPFEQIASGEYNNMN---NLLYPQNDVVKMEEPNFLPQLDP---N 180

Query: 181 NNNNLYFPSD-QDQFISSSYDPYIN 204
           NNNN+YFPSD QDQFISSSYDPYIN
Sbjct: 181 NNNNVYFPSDHQDQFISSSYDPYIN 194

[Close]

BLAST of Lsi01G015640 vs. NCBI nr
Match: XP_038883835.1 (transcription factor LAX PANICLE 1 [Benincasa hispida])

HSP 1 Score: 310.8 bits (795), Expect = 8.5e-81
Identity = 177/205 (86.34%), Postives = 178/205 (86.83%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAA 60
           MDYNFP SNPSSCGSSSG GG   KEKMKK     N NNGGGKRSKGVVKLSTDPQSVAA
Sbjct: 1   MDYNFPTSNPSSCGSSSGGGG---KEKMKK-----NINNGGGKRSKGVVKLSTDPQSVAA 60

Query: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDTSS 120
           RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD SS
Sbjct: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDPSS 120

Query: 121 AATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNN 180
                A+A AAANSGLPFDQIA GEY   NNNMNFL  QNDVVKMEEP FLPQLDPN NN
Sbjct: 121 -----ATAAAAANSGLPFDQIAGGEY---NNNMNFLCSQNDVVKMEEPNFLPQLDPNYNN 180

Query: 181 NNNNLYFPSD-QDQFISSSYDPYIN 204
           NNNNLYFPSD QDQFISSSYDPYIN
Sbjct: 181 NNNNLYFPSDHQDQFISSSYDPYIN 189

[Close]

BLAST of Lsi01G015640 vs. NCBI nr
Match: KAA0037736.1 (HLH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-80
Identity = 175/205 (85.37%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAA 60
           MDYNFPASNPSSCGSSSG GGG  KEKMKK  NNNNN+ G GKRSKGVVKLSTDPQSVAA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGG--KEKMKK--NNNNNHGGAGKRSKGVVKLSTDPQSVAA 60

Query: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDTSS 120
           RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD++S
Sbjct: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNS 120

Query: 121 AATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNN 180
             +A  SA A ANSG PF+QIA GEYNNMN   N LYPQNDVVKMEEP FLPQLDP   N
Sbjct: 121 --SAAVSAAATANSGFPFEQIASGEYNNMN---NLLYPQNDVVKMEEPNFLPQLDP---N 180

Query: 181 NNNNLYFPSD-QDQFISSSYDPYIN 204
           NNNN+YFPSD QDQFISSSYDPYIN
Sbjct: 181 NNNNVYFPSDHQDQFISSSYDPYIN 193

[Close]

BLAST of Lsi01G015640 vs. NCBI nr
Match: TYK10925.1 (HLH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 2.1e-79
Identity = 173/203 (85.22%), Postives = 179/203 (88.18%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAA 60
           MDYNFPASNPSSCGSSSG GGG  KEKMKK  NNNNN+ G GKRSKGVVKLSTDPQSVAA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGG--KEKMKK--NNNNNHGGAGKRSKGVVKLSTDPQSVAA 60

Query: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDTSS 120
           RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD++S
Sbjct: 61  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNS 120

Query: 121 AATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNN 180
             +A  SA A ANSG PF+QIA GEYNNMN   N LYPQNDVVKMEEP FLPQLDP   N
Sbjct: 121 --SAAVSAAATANSGFPFEQIASGEYNNMN---NLLYPQNDVVKMEEPNFLPQLDP---N 180

Query: 181 NNNNLYFPSD-QDQFISSSYDPY 202
           NNNN+YFPSD QDQFISSSYDPY
Sbjct: 181 NNNNVYFPSDHQDQFISSSYDPY 191

[Close]

BLAST of Lsi01G015640 vs. NCBI nr
Match: XP_022931869.1 (transcription factor bHLH140 [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 2.4e-67
Identity = 154/207 (74.40%), Postives = 168/207 (81.16%), Query Frame = 0


Query: 1   MDYNFPASNPSSCGSSSGDG--GGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSV 60
           MDY FPASNPSSCGSSSG    G   KEK+KK    N++ + GGKRSKGVVKLSTDPQSV
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKK----NSSGSCGGKRSKGVVKLSTDPQSV 60

Query: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDT 120
           AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD 
Sbjct: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120

Query: 121 SSAATATASAVAAANSGLPFDQIAVGEYNNMNNNMNFLYPQNDVVKMEEP--FLPQLDPN 180
           SS +TA A+AV   N G  FDQIA GE++N N+  +F+Y QNDVVKMEEP   LPQLDP 
Sbjct: 121 SSNSTAAAAAV---NCGFHFDQIAGGEFHN-NDTNSFVYSQNDVVKMEEPPNLLPQLDP- 180

Query: 181 NNNNNNNLYFPSDQDQFISSSYDPYIN 204
                NNLYFPS QDQ++ SSYDPY+N
Sbjct: 181 -----NNLYFPSGQDQYMCSSYDPYMN 193

[Close]

BLAST of Lsi01G015640 vs. TAIR 10
Match: AT5G01310.1 (APRATAXIN-like )

HSP 1 Score: 121.3 bits (303), Expect = 8.9e-28
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 2   DYNFPASNPSSCGSSSGDGGGGEKEKMKKNNNNNNNNNGGGKRSKGVVKLSTDPQSVAAR 61
           D+N  + NP+S  ++S       + K         +  G  KRS+    LSTDPQSVAAR
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHK---------SETGNTKRSRSTSTLSTDPQSVAAR 62

Query: 62  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFV-DYDTSS 121
           +RRHRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F+ D++T+S
Sbjct: 63  DRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTS 121

Query: 122 AATATASA 129
           + T +  A
Sbjct: 123 SCTYSPGA 121

[Close]

BLAST of Lsi01G015640 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 7.5e-19
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 49  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 105
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of Lsi01G015640 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-18
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 49  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWL 107
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180

[Close]

BLAST of Lsi01G015640 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-17
Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 28  MKKNNNNNNNNNGGGKRS-------------------------KGVVKLSTDPQSVAARE 87
           + K NN+NNNNNG    +                         +  V++S DPQSVAAR 
Sbjct: 80  LDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARH 139

Query: 88  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 105
           RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 140 RRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of Lsi01G015640 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-17
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 49  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 108
           VK+STDPQ+VAAR+RR RIS++ ++LQ+LVPGGTKMDT SMLDEA +Y+KFL+ Q+   +
Sbjct: 273 VKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

Query: 109 TMINFVDYDTSSAATATASAVAAANSGLP 138
            +   +D    S ++A  S      S LP
Sbjct: 333 NLRPKLDQTNLSFSSAPTSFPLFHPSFLP 361

The following BLAST results are available for this feature:

BLAST of Lsi01G015640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M041	1.2e-26	54.69	Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=...	[more]
Q7XAQ6	7.6e-24	61.00	Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=L...	[more]
Q9SND4	1.1e-17	78.57	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q9LXD8	5.3e-17	77.59	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
Q9FHA7	1.5e-16	51.96	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]

BLAST of Lsi01G015640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXM0	4.9e-82	85.37	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 S...	[more]
A0A5A7T6E1	7.0e-81	85.37	HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3CHB0	1.0e-79	85.22	HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1EVF6	1.2e-67	74.40	transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 ...	[more]
A0A6J1HPK4	4.9e-66	73.43	transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]

BLAST of Lsi01G015640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739731.1	1.0e-81	85.37	transcription factor bHLH140 [Cucumis sativus] >KGN54395.1 hypothetical protein ...	[more]
XP_038883835.1	8.5e-81	86.34	transcription factor LAX PANICLE 1 [Benincasa hispida]	[more]
KAA0037736.1	1.4e-80	85.37	HLH domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK10925.1	2.1e-79	85.22	HLH domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_022931869.1	2.4e-67	74.40	transcription factor bHLH140 [Cucurbita moschata]	[more]

BLAST of Lsi01G015640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01310.1	8.9e-28	54.69	APRATAXIN-like	[more]
AT3G50330.1	7.5e-19	78.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	3.7e-18	77.59	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	1.1e-17	51.96	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	3.2e-17	51.69	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 57..106 e-value: 1.6E-12 score: 57.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 61..100 e-value: 1.6E-7 score: 31.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 51..100 score: 15.357671
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 54..112 e-value: 3.5E-10 score: 41.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 56..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 33..172
None	No IPR available	PANTHER	PTHR45914:SF2	TRANSCRIPTION FACTOR LAX PANICLE 1	coord: 33..172
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 52..111 e-value: 3.48952E-39 score: 127.123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G015640.1	Lsi01G015640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity