Lsi01G015060 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G015060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	proteasome assembly chaperone 4
Location	chr01: 13128531 .. 13131423 (-)
RNA-Seq Expression	Lsi01G015060
Synteny	Lsi01G015060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGAGTGTAATTACCATATTTCACGGGTAATTTTAGCAATTTGCCCCATTCATTAATATTCGCTATCGAGCCAGCCGCTCACCGTTCGTCGTCGGGTTCTCATCTCACAGCCTTACCATCGTTCCTTTTCTGGCAACGACGCCAACCGTTCGCCGTTCGGTTGGGGTTGGTGTTCTTGAGCGTTTAGGGGTTTGGAGAAGAAGAAGGTGAGTCTGCTTCTTTTTGTTTATGGGTTTATGTCTGTGGGGATCGGGTCGGATTTTCCGAAACTCGACCGACTCAATTTCACCCCCTAATCTTGCCCAATAAAATTATTTGATTCTGGGGTCGGATTTGCATCTGTATACTCTTGTCTCAACGGCTATTGGAATCCAATCGGTGATTATTTGTTCAAAATTGCAATGTGCTAGAATTTTCATATCCTTGAATCTTGATTAGAAACTTTGAAAAAATCACCTGCAGTTGTATGTTTGCATCTGATGCTCCTATCGGAATTAAGTTTATGTTTGCGATGTTACTTAATTGGATTATTCTTTTGCTGTTAATATTAGTTTGTCTGTCGTTTTGGACTAGGAGATAACCGTTGTGGGCAATTTTTCTTCAAAAAAGTGATATAAGATTAATATTGTAGTGTTTTAGTTAGTTTCTTTGTTTAGGTTGATAAAATGCTATATCAAGGTCAAATCTCAAAAGAAGAACAGCCACTTGCTAGTCCATCAAGTAGCAACAACGATGACAACCTTGATGGTGGTGGGGTTCGGGTTACTTGCTTCAGTGAAGCTATAAATGACGTCCCCATCCATTTTCAGATTATATGTCTCTCCAAACAGGTTTTTCCATGGCTTTCCTAAACCTTCCTTTGTTAGAATCAGTGTGTTAAATAGTTCAACGCTTAGTTTTTTTTATGTTCTTTTCTGTCTTATTTGTTTGTTTGTTTTTATTTTTAATGTGTAGATATATGTATGGATTGGTTGCAATTCTGCAAAACTTGGAAATTTGTATGCAGCTGCCCCCACACGGCCTGTAAGTTGAGCTGCTCTTCACCCTTTTTTTTTAAGAAAGAAACACTGATTGACTGTTTTTCCTGGAAGCACTATAAAGTTTAAACTACTTTTAGAAAATTTCAAATCTAGTTTCTTTTATTTAACCATATACCATGTAAACTTTAACTAGTGGTTCTAATTGGCTAATAATACTTTCTATCATTGCAAAAGTAGTATCAAACTCATCCTAAAAGCAAAAACCTTTTGTTACTTTTATGTATTTTCTGTTCCACCTTCCTCATCTTTTTTTCCTGCCTATTCTTCAATATTATCAGTGCATATTCCTGGTCACATAGTCATTAATATTTTGCAACTGAATCTCTGCAGAACAATACGGTGAGTGTTACTTCCATACTTGGTGGTTCATCTGATAATACAGGATCTACCATGGCACGTCGATTAGGTAATATATGAATCTAGTTTTGACCTCTGAGTACTTAAGATGTCATGTCCTGTCTTTTCTTTATCATCTATTCTTCAATATTATCAGTCCTATTCTTCAATATTATCACTAATACGCTTGTTCCTCCTTTCCTAGTGTTAAAAACTGGTCTAAATATCATCTTGGCTAGCAATATTCCAAAAAACAGCCCCATGATCGAGGTTTGACGATCCTCCTCCTCCTGGTTTTTTCTAACAGGCGAACTATGCATGAGATGATTGGTCTAAGAAAGAACTATGCCTGGAATATTTTGTGCTCGTTTGATAACCATTCAAACTTTTCTATCAGTATGTTGGCCTTGTTATCTACTTCATAAAAATGGAAGTCAATTTTGACGAACTGAGAAAAATAGTTTCCTAAACCTTGAGCTTTGTTTTTTAAAAAAATTTGGTTACAGCTTTCAAAAAAAAAAAAAAAAGTGAAGGTGAAAAATAAAGCAAAGAAATTGTTTGAGGAAACCAGTATAGTTTTTGTAAACAAGAAAACTGAAGTCCCGTTTGATAACAATTTAATTTTTAGTTTTCTGTTTTTGAAATTTATGCTTTGTCTTCCCCCAATTTTCTTAATATCAGTTTCACATTTCAAGAAACATTTGAATTCTTAGTCATATTCTAAAAAAAGAAAAATATAAATAAAACTACTTTTTCTAGTTTTCAAAACTTGTCTGAGTTTGAAGATGGATAACAAAACAAAAATTATAGGTGAAAGAAGTGCTTAATGACTTAAATTCTAACCATACAAGAAATAAAAAAAACTAAATGGTTATTAAATAGGGTCTAAATCATTATCATGCTTTCAAGTTTTAGATTTCTACTTAGCTGTTGTTTTTGTTTGATCATTTTAGGTAGCAGCTGAAAAAATATTAGTGCAAAAGCTGGCCACTTTAGGGCACATTAGGCCTAAATCAGAAGGGCCATCTAGATAATTGGTACTGATGATTAGTCTTCTTTGCAAGAGCCAAAGAGGCATTTGTTACTCTGGTTCAAAGAGGCATTTGCTACTCTGGTTATGGTAGCTGCTTTCTTCTCTGCAACCTTGTGACTTGAATATAGGCTAGGACTTTGGAGGAGAATATCCCCAAACAAACCGCCTATCAAGGTACTCAATGAGGTTCTCTTTTACTTCATCCTGCTTAGATATTGGTTAAGAACATTATTCATTTGTCGTTATAATATTGGATAAATCAATAGCAAAATACAAAATGAAGGTGTAAATATGTTGTACATTTATTTGTTTAATTTCTCATTGGAAGAAGAATTTCGAGAATGAGTTACATTAAGGGAAAAAAATTCACCCCGATGTTCGACTCGTGAGTTGATCTCTATGCATATAGATGTATGTCGTATTCTTCGTACACCCTTGTATTTTTTTTATTTTTTTTCAAAAAGCGTGGTTACCAAAAAAAA

mRNA sequence

TTGAGAGTGTAATTACCATATTTCACGGGTAATTTTAGCAATTTGCCCCATTCATTAATATTCGCTATCGAGCCAGCCGCTCACCGTTCGTCGTCGGGTTCTCATCTCACAGCCTTACCATCGTTCCTTTTCTGGCAACGACGCCAACCGTTCGCCGTTCGGTTGGGGTTGGTGTTCTTGAGCGTTTAGGGGTTTGGAGAAGAAGAAGTTAGTTTCTTTGTTTAGGTTGATAAAATGCTATATCAAGGTCAAATCTCAAAAGAAGAACAGCCACTTGCTAGTCCATCAAGTAGCAACAACGATGACAACCTTGATGGTGGTGGGGTTCGGGTTACTTGCTTCAGTGAAGCTATAAATGACGTCCCCATCCATTTTCAGATTATATGTCTCTCCAAACAGATATATGTATGGATTGGTTGCAATTCTGCAAAACTTGGAAATTTGTATGCAGCTGCCCCCACACGGCCTAACAATACGGTGAGTGTTACTTCCATACTTGGTGGTTCATCTGATAATACAGGATCTACCATGGCACGTCGATTAGTCCTATTCTTCAATATTATCACTAATACGCTTGTTCCTCCTTTCCTAGTGTTAAAAACTGGTCTAAATATCATCTTGGCTAGCAATATTCCAAAAAACAGCCCCATGATCGAGGTAGCAGCTGAAAAAATATTAGTGCAAAAGCTGGCCACTTTAGGGCACATTAGGCCTAAATCAGAAGGGCCATCTAGATAATTGGTACTGATGATTAGTCTTCTTTGCAAGAGCCAAAGAGGCATTTGTTACTCTGGTTCAAAGAGGCATTTGCTACTCTGGTTATGGTAGCTGCTTTCTTCTCTGCAACCTTGTGACTTGAATATAGGCTAGGACTTTGGAGGAGAATATCCCCAAACAAACCGCCTATCAAGGTACTCAATGAGGTTCTCTTTTACTTCATCCTGCTTAGATATTGGTTAAGAACATTATTCATTTGTCGTTATAATATTGGATAAATCAATAGCAAAATACAAAATGAAGGTGTAAATATGTTGTACATTTATTTGTTTAATTTCTCATTGGAAGAAGAATTTCGAGAATGAGTTACATTAAGGGAAAAAAATTCACCCCGATGTTCGACTCGTGAGTTGATCTCTATGCATATAGATGTATGTCGTATTCTTCGTACACCCTTGTATTTTTTTTATTTTTTTTCAAAAAGCGTGGTTACCAAAAAAAA

Coding sequence (CDS)

ATGCTATATCAAGGTCAAATCTCAAAAGAAGAACAGCCACTTGCTAGTCCATCAAGTAGCAACAACGATGACAACCTTGATGGTGGTGGGGTTCGGGTTACTTGCTTCAGTGAAGCTATAAATGACGTCCCCATCCATTTTCAGATTATATGTCTCTCCAAACAGATATATGTATGGATTGGTTGCAATTCTGCAAAACTTGGAAATTTGTATGCAGCTGCCCCCACACGGCCTAACAATACGGTGAGTGTTACTTCCATACTTGGTGGTTCATCTGATAATACAGGATCTACCATGGCACGTCGATTAGTCCTATTCTTCAATATTATCACTAATACGCTTGTTCCTCCTTTCCTAGTGTTAAAAACTGGTCTAAATATCATCTTGGCTAGCAATATTCCAAAAAACAGCCCCATGATCGAGGTAGCAGCTGAAAAAATATTAGTGCAAAAGCTGGCCACTTTAGGGCACATTAGGCCTAAATCAGAAGGGCCATCTAGATAA

Protein sequence

MLYQGQISKEEQPLASPSSSNNDDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVWIGCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFLVLKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEGPSR

Homology

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BLAST of Lsi01G015060 vs. ExPASy Swiss-Prot
Match: Q5JS54 (Proteasome assembly chaperone 4 OS=Homo sapiens OX=9606 GN=PSMG4 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 5.5e-04
Identity = 25/76 (32.89%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 28  GGGVRVTCFSEAINDVPIHFQIICLSKQIYVWIGCNSAKLGNLYAAAPTRPNNTVSVTSI 87
           GG V +  FS  + +  +HF ++ L+  +++W+G  +  L NL  A  +R ++    TS+
Sbjct: 9   GGDVSLHNFSARLWEQLVHFHVMRLTDSLFLWVGA-TPHLRNLAVAMCSRYDSIPVSTSL 68

Query: 88  LGGSSDNTGSTMARRL 104
           LG +SD T + +A+RL
Sbjct: 69  LGDTSDTTSTGLAQRL 83

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BLAST of Lsi01G015060 vs. ExPASy TrEMBL
Match: A0A1S3BJY7 (proteasome assembly chaperone 4 OS=Cucumis melo OX=3656 GN=LOC103490859 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.0e-69
Identity = 140/167 (83.83%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVWI 60
           ML++GQISKEEQPLASPSSSN++DNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIY+WI
Sbjct: 1   MLHEGQISKEEQPLASPSSSNSNDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYIWI 60

Query: 61  GCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFLV 120
           GCNSAK GNLYAAAPTRPNNTVSVTS+LGGSSDNTGS+MARR                LV
Sbjct: 61  GCNSAKFGNLYAAAPTRPNNTVSVTSLLGGSSDNTGSSMARR----------------LV 120

Query: 121 LKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEGPSR 168
           LKTGLNIILASNIPKNSPMIEVAAEK+LVQKL TLG+IRPKSEGPSR
Sbjct: 121 LKTGLNIILASNIPKNSPMIEVAAEKVLVQKLVTLGYIRPKSEGPSR 151

[Close]

BLAST of Lsi01G015060 vs. ExPASy TrEMBL
Match: A0A5D3BBH2 (Proteasome assembly chaperone 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00260 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.3e-68
Identity = 137/164 (83.54%), Postives = 146/164 (89.02%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVWI 60
           ML++GQISKEEQPLASPSSSN++DNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIY+WI
Sbjct: 1   MLHEGQISKEEQPLASPSSSNSNDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYIWI 60

Query: 61  GCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFLV 120
           GCNSAK GNLYAAAPTRPNNTVSVTS+LGGSSDNTGS+MARR                LV
Sbjct: 61  GCNSAKFGNLYAAAPTRPNNTVSVTSLLGGSSDNTGSSMARR----------------LV 120

Query: 121 LKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEG 165
           LKTGLNIILASNIPKNSPMIEVAAEK+LVQKL TLG+IRPKSEG
Sbjct: 121 LKTGLNIILASNIPKNSPMIEVAAEKVLVQKLVTLGYIRPKSEG 148

[Close]

BLAST of Lsi01G015060 vs. ExPASy TrEMBL
Match: A0A0A0KZU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G304800 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 132/167 (79.04%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVWI 60
           ML++GQISKEEQ  ASPS+SN++ NLD   VRVTCFSEAINDVPIHFQIICLSKQIYVWI
Sbjct: 1   MLHEGQISKEEQSFASPSNSNSNGNLD--DVRVTCFSEAINDVPIHFQIICLSKQIYVWI 60

Query: 61  GCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFLV 120
           GCNSAK GNLYAAAPTRPNNTVSVTSILGGSSDNTGS+MARR                LV
Sbjct: 61  GCNSAKFGNLYAAAPTRPNNTVSVTSILGGSSDNTGSSMARR----------------LV 120

Query: 121 LKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEGPSR 168
           LKTGLNIILASNIPKNSP+IEVAAEK+LVQKL TLG++RPK EGPSR
Sbjct: 121 LKTGLNIILASNIPKNSPIIEVAAEKVLVQKLVTLGYVRPKPEGPSR 149

[Close]

BLAST of Lsi01G015060 vs. ExPASy TrEMBL
Match: A0A6J1IXU6 (proteasome assembly chaperone 4 OS=Cucurbita maxima OX=3661 GN=LOC111479503 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.0e-62
Identity = 132/167 (79.04%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDD-NLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVW 60
           MLYQ QISKEEQ LASPSSSNNDD +LDGGG++VTCFSEAINDVPIHFQII L KQIY W
Sbjct: 1   MLYQAQISKEEQTLASPSSSNNDDHHLDGGGIQVTCFSEAINDVPIHFQIIRLPKQIYAW 60

Query: 61  IGCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFL 120
           IGCNSAK GNLYAAAPTRPNN VSVTS+LGGSSDNTGS+MARR                L
Sbjct: 61  IGCNSAKFGNLYAAAPTRPNNMVSVTSLLGGSSDNTGSSMARR----------------L 120

Query: 121 VLKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEGPS 167
           VLKTGLNI+LASNIPKNSP+IEVAAEK+LVQKL +LG IRPKSEGPS
Sbjct: 121 VLKTGLNIMLASNIPKNSPIIEVAAEKMLVQKLVSLGLIRPKSEGPS 151

[Close]

BLAST of Lsi01G015060 vs. ExPASy TrEMBL
Match: A0A6J1GVJ0 (proteasome assembly chaperone 4 OS=Cucurbita moschata OX=3662 GN=LOC111457557 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.8e-62
Identity = 132/167 (79.04%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDD-NLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVW 60
           ML+Q QISKEEQ LA PSSSNNDD +LDGGG++VTCFSEAINDVPIHFQII L KQIY W
Sbjct: 1   MLHQAQISKEEQTLAIPSSSNNDDHHLDGGGIQVTCFSEAINDVPIHFQIIRLPKQIYAW 60

Query: 61  IGCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFL 120
           IGCNSAK GNLYAAAPTRPNNTVSVTS+LGGSSDNTGSTMARR                L
Sbjct: 61  IGCNSAKFGNLYAAAPTRPNNTVSVTSLLGGSSDNTGSTMARR----------------L 120

Query: 121 VLKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEGPS 167
           VLKTGLNI+LASNIPKNSP+IEVAAEK+LVQKL +LG IRPKSEGPS
Sbjct: 121 VLKTGLNIMLASNIPKNSPIIEVAAEKMLVQKLVSLGLIRPKSEGPS 151

[Close]

BLAST of Lsi01G015060 vs. NCBI nr
Match: XP_038881184.1 (proteasome assembly chaperone 4 [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 7.2e-70
Identity = 142/167 (85.03%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVWI 60
           MLYQGQISKEEQP++SPS SNNDDNLDGGGV+VTCFSEAINDVPIHFQIICLSKQIYVWI
Sbjct: 1   MLYQGQISKEEQPVSSPSISNNDDNLDGGGVQVTCFSEAINDVPIHFQIICLSKQIYVWI 60

Query: 61  GCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFLV 120
           GCNSAK+GNLYAAAPTRPNNTVSVTSILGGSSDNTGS+MARR                LV
Sbjct: 61  GCNSAKIGNLYAAAPTRPNNTVSVTSILGGSSDNTGSSMARR----------------LV 120

Query: 121 LKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEGPSR 168
           LK+GLNIILASNIPKNSPMIEVAAEKILVQKL TLG+IRPKSEGPSR
Sbjct: 121 LKSGLNIILASNIPKNSPMIEVAAEKILVQKLVTLGYIRPKSEGPSR 151

[Close]

BLAST of Lsi01G015060 vs. NCBI nr
Match: XP_008448802.1 (PREDICTED: proteasome assembly chaperone 4 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 2.1e-69
Identity = 140/167 (83.83%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVWI 60
           ML++GQISKEEQPLASPSSSN++DNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIY+WI
Sbjct: 1   MLHEGQISKEEQPLASPSSSNSNDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYIWI 60

Query: 61  GCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFLV 120
           GCNSAK GNLYAAAPTRPNNTVSVTS+LGGSSDNTGS+MARR                LV
Sbjct: 61  GCNSAKFGNLYAAAPTRPNNTVSVTSLLGGSSDNTGSSMARR----------------LV 120

Query: 121 LKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEGPSR 168
           LKTGLNIILASNIPKNSPMIEVAAEK+LVQKL TLG+IRPKSEGPSR
Sbjct: 121 LKTGLNIILASNIPKNSPMIEVAAEKVLVQKLVTLGYIRPKSEGPSR 151

[Close]

BLAST of Lsi01G015060 vs. NCBI nr
Match: KAA0045091.1 (proteasome assembly chaperone 4 [Cucumis melo var. makuwa] >TYJ96236.1 proteasome assembly chaperone 4 [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 137/164 (83.54%), Postives = 146/164 (89.02%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVWI 60
           ML++GQISKEEQPLASPSSSN++DNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIY+WI
Sbjct: 1   MLHEGQISKEEQPLASPSSSNSNDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYIWI 60

Query: 61  GCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFLV 120
           GCNSAK GNLYAAAPTRPNNTVSVTS+LGGSSDNTGS+MARR                LV
Sbjct: 61  GCNSAKFGNLYAAAPTRPNNTVSVTSLLGGSSDNTGSSMARR----------------LV 120

Query: 121 LKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEG 165
           LKTGLNIILASNIPKNSPMIEVAAEK+LVQKL TLG+IRPKSEG
Sbjct: 121 LKTGLNIILASNIPKNSPMIEVAAEKVLVQKLVTLGYIRPKSEG 148

[Close]

BLAST of Lsi01G015060 vs. NCBI nr
Match: XP_023526532.1 (proteasome assembly chaperone 4 [Cucurbita pepo subsp. pepo] >XP_023526535.1 proteasome assembly chaperone 4 [Cucurbita pepo subsp. pepo] >XP_023526536.1 proteasome assembly chaperone 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.8 bits (639), Expect = 8.5e-63
Identity = 134/167 (80.24%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDD-NLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVW 60
           MLYQ QISKEEQ LASPSSSNNDD +LDGGG++VTCFSEAINDVPIHFQII L KQIY W
Sbjct: 1   MLYQAQISKEEQTLASPSSSNNDDHHLDGGGIQVTCFSEAINDVPIHFQIIRLPKQIYAW 60

Query: 61  IGCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFL 120
           IGCNSAK GNLYAAAPTRPNNTVSVTS+LGGSSDNTGSTMARR                L
Sbjct: 61  IGCNSAKFGNLYAAAPTRPNNTVSVTSLLGGSSDNTGSTMARR----------------L 120

Query: 121 VLKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEGPS 167
           VLKTGLNI+LASNIPKNSP+IEVAAEK+LVQKL +LG IRPKSEGPS
Sbjct: 121 VLKTGLNIMLASNIPKNSPIIEVAAEKMLVQKLVSLGLIRPKSEGPS 151

[Close]

BLAST of Lsi01G015060 vs. NCBI nr
Match: XP_004147905.1 (proteasome assembly chaperone 4 [Cucumis sativus] >XP_011653669.1 proteasome assembly chaperone 4 [Cucumis sativus] >XP_011653670.1 proteasome assembly chaperone 4 [Cucumis sativus] >XP_031740248.1 proteasome assembly chaperone 4 [Cucumis sativus] >KGN54334.1 hypothetical protein Csa_017960 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-62
Identity = 132/167 (79.04%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MLYQGQISKEEQPLASPSSSNNDDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVWI 60
           ML++GQISKEEQ  ASPS+SN++ NLD   VRVTCFSEAINDVPIHFQIICLSKQIYVWI
Sbjct: 1   MLHEGQISKEEQSFASPSNSNSNGNLD--DVRVTCFSEAINDVPIHFQIICLSKQIYVWI 60

Query: 61  GCNSAKLGNLYAAAPTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFLV 120
           GCNSAK GNLYAAAPTRPNNTVSVTSILGGSSDNTGS+MARR                LV
Sbjct: 61  GCNSAKFGNLYAAAPTRPNNTVSVTSILGGSSDNTGSSMARR----------------LV 120

Query: 121 LKTGLNIILASNIPKNSPMIEVAAEKILVQKLATLGHIRPKSEGPSR 168
           LKTGLNIILASNIPKNSP+IEVAAEK+LVQKL TLG++RPK EGPSR
Sbjct: 121 LKTGLNIILASNIPKNSPIIEVAAEKVLVQKLVTLGYVRPKPEGPSR 149

[Close]

BLAST of Lsi01G015060 vs. TAIR 10
Match: AT1G48170.1 (unknown protein; Has 78 Blast hits to 78 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 165.2 bits (417), Expect = 4.4e-41
Identity = 86/148 (58.11%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 14  LASPSSSNNDDNLDGGGVRVTCFSEAINDVPIHFQIICLSKQIYVWIGCNSAKLGNLYAA 73
           +A     ++D   DG GV+V+CF+E  +DV I FQII L+KQIYVW+GCNSAK G+LYAA
Sbjct: 17  IADQIGESDDVERDGNGVKVSCFTEVFDDVTIQFQIIRLAKQIYVWVGCNSAKFGSLYAA 76

Query: 74  APTRPNNTVSVTSILGGSSDNTGSTMARRLVLFFNIITNTLVPPFLVLKTGLNIILASNI 133
           A TRP+NTVSVTS+LGG+SDNTGS +ARR                LVLKTGLNIILA NI
Sbjct: 77  ASTRPSNTVSVTSVLGGTSDNTGSGIARR----------------LVLKTGLNIILACNI 136

Query: 134 PKNSPMIEVAAEKILVQKLATLGHIRPK 162
           PKN+P++E  AEK+L++KL  LG+   K
Sbjct: 137 PKNNPLLEAKAEKVLIRKLIDLGYTMSK 148

The following BLAST results are available for this feature:

BLAST of Lsi01G015060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5JS54	5.5e-04	32.89	Proteasome assembly chaperone 4 OS=Homo sapiens OX=9606 GN=PSMG4 PE=1 SV=2	[more]

BLAST of Lsi01G015060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BJY7	1.0e-69	83.83	proteasome assembly chaperone 4 OS=Cucumis melo OX=3656 GN=LOC103490859 PE=4 SV=...	[more]
A0A5D3BBH2	7.3e-68	83.54	Proteasome assembly chaperone 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0KZU0	1.2e-62	79.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G304800 PE=4 SV=1	[more]
A0A6J1IXU6	6.0e-62	79.04	proteasome assembly chaperone 4 OS=Cucurbita maxima OX=3661 GN=LOC111479503 PE=4...	[more]
A0A6J1GVJ0	7.8e-62	79.04	proteasome assembly chaperone 4 OS=Cucurbita moschata OX=3662 GN=LOC111457557 PE...	[more]

BLAST of Lsi01G015060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881184.1	7.2e-70	85.03	proteasome assembly chaperone 4 [Benincasa hispida]	[more]
XP_008448802.1	2.1e-69	83.83	PREDICTED: proteasome assembly chaperone 4 [Cucumis melo]	[more]
KAA0045091.1	1.5e-67	83.54	proteasome assembly chaperone 4 [Cucumis melo var. makuwa] >TYJ96236.1 proteasom...	[more]
XP_023526532.1	8.5e-63	80.24	proteasome assembly chaperone 4 [Cucurbita pepo subsp. pepo] >XP_023526535.1 pro...	[more]
XP_004147905.1	2.5e-62	79.04	proteasome assembly chaperone 4 [Cucumis sativus] >XP_011653669.1 proteasome ass...	[more]

BLAST of Lsi01G015060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48170.1	4.4e-41	58.11	unknown protein; Has 78 Blast hits to 78 proteins in 34 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032157	Proteasome assembly chaperone 4	PFAM	PF16093	PAC4	coord: 45..104 e-value: 3.7E-15 score: 55.9
IPR032157	Proteasome assembly chaperone 4	PANTHER	PTHR33559	PROTEASOME ASSEMBLY CHAPERONE 4	coord: 24..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G015060.1	Lsi01G015060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0000502	proteasome complex