Lsi01G013700 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G013700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA topoisomerase 6 subunit A
Location	chr01: 11902517 .. 11903779 (-)
RNA-Seq Expression	Lsi01G013700
Synteny	Lsi01G013700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACAAGAGAAAGCGCCGGCGATCTGAACTGAATCCCGACGGTGAAGCTCAACTTCCCTTTAAGAGCAGCCTCAAACATGATTCCATCATTCTTCAAATTCTCAAAGAGTTCAGTGACAGCTCCACCGCCTCATCTTCCTCTTCATCTAAAACCCTCGACGAGCTCGGCCTCTCCTCCTCCTGCCGCGAGGTCACCGATCTTTCTCTTTCGTCCGTGCAGTCCACAATTGAATCTCTAATCCTGAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCCTTTGATGTTCCTTCTCGATCGGCAGCCAACCAATTATACGTTCCGGAGCTCGATCGCATCGTCTTGAAAGACAAAACTGCCCTCCGCCCCTACGCCAATATTTCCACTGTCCGGAAATCCACCATTACTACTCGCATTATTCAGCTTGTCCACCAACTTTGCTTAAAAAATATCCATGTGACCAAGCGAGATCTGTTCTACACGGATGTAAAGCTCTTCCAGGATCAGACTCAGTCAGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGCTGTACTCGGTCGAGTCTCAATGTGATTGCTGCGGAGAAAGGGGTGGTTGTGGGAAGGCTCATTTTCAGTGACAATGGGGATATGATCGATTGCACTAAAATGGGTATGGGAGGAAAAGCAATTCCACCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATACTCTTAGTTGAGAAAGATGCTGCGTATATTAGGTTAGCAGAGGATAGATTTTACAATCGCTTTCCATGTATAATTGTGACGGCTAAGGGACAGCCAGATGTGGCCACGAGATTGTTCTTGAGGAAGATGAAGATGGAGCTGAAGCTACCAGTTCTTGCGCTTGTGGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGATGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTGGGAATTAGGCCGAGTGATTTGGATAAATATAAAATACCTGAGCAGTGCAGGTTACCTATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTCAAAAAGAATCCTGGTTGGGTTGAAGAGCTCACTTTAATGGTGAAGACAAAGCAAAAGGCTGAAATTCAGGCATTGAGCTCATTTGGGTTTCAGTATCTGTCAGAGGTTTATTTGCCATTGAAGCTACAGCAGAAGGATTGGCTGTGA

mRNA sequence

ATGGCCGACAAGAGAAAGCGCCGGCGATCTGAACTGAATCCCGACGGTGAAGCTCAACTTCCCTTTAAGAGCAGCCTCAAACATGATTCCATCATTCTTCAAATTCTCAAAGAGTTCAGTGACAGCTCCACCGCCTCATCTTCCTCTTCATCTAAAACCCTCGACGAGCTCGGCCTCTCCTCCTCCTGCCGCGAGGTCACCGATCTTTCTCTTTCGTCCGTGCAGTCCACAATTGAATCTCTAATCCTGAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCCTTTGATGTTCCTTCTCGATCGGCAGCCAACCAATTATACGTTCCGGAGCTCGATCGCATCGTCTTGAAAGACAAAACTGCCCTCCGCCCCTACGCCAATATTTCCACTGTCCGGAAATCCACCATTACTACTCGCATTATTCAGCTTGTCCACCAACTTTGCTTAAAAAATATCCATGTGACCAAGCGAGATCTGTTCTACACGGATGTAAAGCTCTTCCAGGATCAGACTCAGTCAGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGCTGTACTCGGTCGAGTCTCAATGTGATTGCTGCGGAGAAAGGGGTGGTTGTGGGAAGGCTCATTTTCAGTGACAATGGGGATATGATCGATTGCACTAAAATGGGTATGGGAGGAAAAGCAATTCCACCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATACTCTTAGTTGAGAAAGATGCTGCGTATATTAGGTTAGCAGAGGATAGATTTTACAATCGCTTTCCATGTATAATTGTGACGGCTAAGGGACAGCCAGATGTGGCCACGAGATTGTTCTTGAGGAAGATGAAGATGGAGCTGAAGCTACCAGTTCTTGCGCTTGTGGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGATGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTGGGAATTAGGCCGAGTGATTTGGATAAATATAAAATACCTGAGCAGTGCAGGTTACCTATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTCAAAAAGAATCCTGGTTGGGTTGAAGAGCTCACTTTAATGGTGAAGACAAAGCAAAAGGCTGAAATTCAGGCATTGAGCTCATTTGGGTTTCAGTATCTGTCAGAGGTTTATTTGCCATTGAAGCTACAGCAGAAGGATTGGCTGTGA

Coding sequence (CDS)

ATGGCCGACAAGAGAAAGCGCCGGCGATCTGAACTGAATCCCGACGGTGAAGCTCAACTTCCCTTTAAGAGCAGCCTCAAACATGATTCCATCATTCTTCAAATTCTCAAAGAGTTCAGTGACAGCTCCACCGCCTCATCTTCCTCTTCATCTAAAACCCTCGACGAGCTCGGCCTCTCCTCCTCCTGCCGCGAGGTCACCGATCTTTCTCTTTCGTCCGTGCAGTCCACAATTGAATCTCTAATCCTGAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCCTTTGATGTTCCTTCTCGATCGGCAGCCAACCAATTATACGTTCCGGAGCTCGATCGCATCGTCTTGAAAGACAAAACTGCCCTCCGCCCCTACGCCAATATTTCCACTGTCCGGAAATCCACCATTACTACTCGCATTATTCAGCTTGTCCACCAACTTTGCTTAAAAAATATCCATGTGACCAAGCGAGATCTGTTCTACACGGATGTAAAGCTCTTCCAGGATCAGACTCAGTCAGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGCTGTACTCGGTCGAGTCTCAATGTGATTGCTGCGGAGAAAGGGGTGGTTGTGGGAAGGCTCATTTTCAGTGACAATGGGGATATGATCGATTGCACTAAAATGGGTATGGGAGGAAAAGCAATTCCACCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATACTCTTAGTTGAGAAAGATGCTGCGTATATTAGGTTAGCAGAGGATAGATTTTACAATCGCTTTCCATGTATAATTGTGACGGCTAAGGGACAGCCAGATGTGGCCACGAGATTGTTCTTGAGGAAGATGAAGATGGAGCTGAAGCTACCAGTTCTTGCGCTTGTGGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGATGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTGGGAATTAGGCCGAGTGATTTGGATAAATATAAAATACCTGAGCAGTGCAGGTTACCTATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTCAAAAAGAATCCTGGTTGGGTTGAAGAGCTCACTTTAATGGTGAAGACAAAGCAAAAGGCTGAAATTCAGGCATTGAGCTCATTTGGGTTTCAGTATCTGTCAGAGGTTTATTTGCCATTGAAGCTACAGCAGAAGGATTGGCTGTGA

Protein sequence

MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLSSSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL

Homology

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BLAST of Lsi01G013700 vs. ExPASy Swiss-Prot
Match: Q9LZ03 (DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana OX=3702 GN=TOP6A PE=1 SV=1)

HSP 1 Score: 701.8 bits (1810), Expect = 4.6e-201
Identity = 359/429 (83.68%), Postives = 395/429 (92.07%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSS---------TASSSSSS 60
           MADK+KR+RS+   D   +LPFKS L+ D +I ++LK +  SS          +SSSS  
Sbjct: 1   MADKKKRKRSK--DDEAEELPFKSILESDDVITELLKSYISSSIKAAAGAGGASSSSSKP 60

Query: 61  KTLDELGLSSSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVP 120
            TL +L LSSSCREV DLSLSSVQ+ IE++I++IARSIL+G+GF+F VPSR+A+NQLYVP
Sbjct: 61  LTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVP 120

Query: 121 ELDRIVLKDKTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQD 180
           ELDRIVLKDK+ LRP+A++S+VRK+TITTRI+ L+HQLCL+NIHVTKRDLFYTDVKLFQD
Sbjct: 121 ELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQD 180

Query: 181 QTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240
           QTQSD+VLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN
Sbjct: 181 QTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240

Query: 241 IDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300
           IDRVGDMQSDA+FILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME
Sbjct: 241 IDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300

Query: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360
           LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC
Sbjct: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360

Query: 361 RLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLP 420
           RLPMTEQDIKTGKD+LEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYLSEVYLP
Sbjct: 361 RLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLP 420

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BLAST of Lsi01G013700 vs. ExPASy Swiss-Prot
Match: A2XFC1 (DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 PE=1 SV=2)

HSP 1 Score: 567.0 bits (1460), Expect = 1.8e-160
Identity = 288/407 (70.76%), Postives = 347/407 (85.26%), Query Frame = 0


Query: 23  KSSLKHDSIILQILKEFSDS--------STASSSSSSKTL-DELGLSSSCREVTDLSLSS 82
           +S L+ D+ IL  L+  + +        S++SSSS+SK L  E   ++S   V D   +S
Sbjct: 36  RSKLRPDASILATLRSLASACSKSKPAGSSSSSSSASKALAAEDDPAASYIVVADQDSAS 95

Query: 83  VQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYANISTV 142
           V S I  L+L  ARSILSG GF+F VPSR+A+NQ+Y+P+LDRIVL  + + RP+AN++T 
Sbjct: 96  VTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESARPFANVATA 155

Query: 143 RKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRSSL 202
           RK+TIT R++ LVH +  + IHVTKRDLFYTDVKLF DQ QSD+VLDDVSC+LGCTRSSL
Sbjct: 156 RKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCMLGCTRSSL 215

Query: 203 NVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAA 262
           +V+A+EKGVVVGRL F+D+GD IDCT+MG+GGKAIPPNIDRV  ++SDALFILLVEKDAA
Sbjct: 216 HVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKDAA 275

Query: 263 YIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVY 322
           ++RLAEDRFYNRFPCII+TAKGQPDVATRLFLR++K+ELKLPVLALVDSDPYGLKILSVY
Sbjct: 276 FMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPYGLKILSVY 335

Query: 323 GCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVK 382
            CGSKNMSYDSANLTTPDIKWLG+RPSDLDKY++PEQCRLPMT+ DIK GK+LLEEDFVK
Sbjct: 336 MCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDFVK 395

Query: 383 KNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           +N GWV+EL  M++T+QKAEIQALSSFGFQYL+EVYLPLKLQQ+DW+
Sbjct: 396 QNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442

[Close]

BLAST of Lsi01G013700 vs. ExPASy Swiss-Prot
Match: Q0DSV9 (Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-3 PE=2 SV=2)

HSP 1 Score: 567.0 bits (1460), Expect = 1.8e-160
Identity = 288/407 (70.76%), Postives = 347/407 (85.26%), Query Frame = 0


Query: 23  KSSLKHDSIILQILKEFSDS--------STASSSSSSKTL-DELGLSSSCREVTDLSLSS 82
           +S L+ D+ IL  L+  + +        S++SSSS+SK L  E   ++S   V D   +S
Sbjct: 36  RSKLRPDASILATLRSLASACSKSKPAGSSSSSSSASKALAAEDDPAASYIVVADQDSAS 95

Query: 83  VQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYANISTV 142
           V S I  L+L  ARSILSG GF+F VPSR+A+NQ+Y+P+LDRIVL  + + RP+AN++T 
Sbjct: 96  VTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESARPFANVATA 155

Query: 143 RKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRSSL 202
           RK+TIT R++ LVH +  + IHVTKRDLFYTDVKLF DQ QSD+VLDDVSC+LGCTRSSL
Sbjct: 156 RKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCMLGCTRSSL 215

Query: 203 NVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAA 262
           +V+A+EKGVVVGRL F+D+GD IDCT+MG+GGKAIPPNIDRV  ++SDALFILLVEKDAA
Sbjct: 216 HVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKDAA 275

Query: 263 YIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVY 322
           ++RLAEDRFYNRFPCII+TAKGQPDVATRLFLR++K+ELKLPVLALVDSDPYGLKILSVY
Sbjct: 276 FMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPYGLKILSVY 335

Query: 323 GCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVK 382
            CGSKNMSYDSANLTTPDIKWLG+RPSDLDKY++PEQCRLPMT+ DIK GK+LLEEDFVK
Sbjct: 336 MCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDFVK 395

Query: 383 KNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           +N GWV+EL  M++T+QKAEIQALSSFGFQYL+EVYLPLKLQQ+DW+
Sbjct: 396 QNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442

[Close]

BLAST of Lsi01G013700 vs. ExPASy Swiss-Prot
Match: Q9Y5K1 (Meiotic recombination protein SPO11 OS=Homo sapiens OX=9606 GN=SPO11 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-64
Identity = 128/355 (36.06%), Postives = 220/355 (61.97%), Query Frame = 0


Query: 70  SLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYAN 129
           S S V ++IE++I  I  S+      AF + +RS+   +   +   + +      R   +
Sbjct: 43  SSSEVLASIENIIQDIITSLARNEAPAFTIDNRSSWENIKFEDSVGLQMVSHCTTRKIKS 102

Query: 130 IS--TVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILG 189
            S  + +K ++  +I+ ++++L   N + TKRD++YTD +LF +QT  D++++D+SC+L 
Sbjct: 103 DSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLK 162

Query: 190 CTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFIL 249
            +R SL++++  KG++ G L +  ++G  ++CT  G    A+P NI  + ++ +DA F+L
Sbjct: 163 VSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCT-CGATAVAVPSNIQGIRNLVTDAKFVL 222

Query: 250 LVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 309
           +VEKDA + RL +D F N+  PCI++T KG PD+ TRL ++K+     +PV  LVD+DP+
Sbjct: 223 IVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPH 282

Query: 310 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKD 369
           G++I+ +Y  GS +MS+++ +LT P I+WLG+ PSDL +  +P+   +P+T++D      
Sbjct: 283 GIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDS 342

Query: 370 LLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           +L   +V   P W +E+ +M  +K KAEIQAL+     YLS VYLP KL+   W+
Sbjct: 343 ILRRPYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 396

[Close]

BLAST of Lsi01G013700 vs. ExPASy Swiss-Prot
Match: Q9WTK8 (Meiotic recombination protein SPO11 OS=Mus musculus OX=10090 GN=Spo11 PE=1 SV=2)

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-64
Identity = 134/363 (36.91%), Postives = 214/363 (58.95%), Query Frame = 0


Query: 70  SLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYAN 129
           S S V + IE++I  I +S+      AF + +RS+         + I+  D   LR    
Sbjct: 43  SSSEVLTAIENIIQDIIKSLARNEVPAFTIDNRSS--------WENIMFDDSVGLRMIPQ 102

Query: 130 IST----------VRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVL 189
            +T          V+K  +  +++ ++++L   + + TKRD++YTD +LF +Q   DS +
Sbjct: 103 CTTRKIRSDSPKSVKKFALILKVLSMIYKLIQSDTYATKRDIYYTDSQLFGNQAAVDSAI 162

Query: 190 DDVSCILGCTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDM 249
           DD+SC+L   R SL+V++  KG++ G L +  ++G  + CT       A+P NI  +  +
Sbjct: 163 DDISCMLKVPRRSLHVLSTSKGLIAGNLRYMEEDGTRVQCT-CSATATAVPTNIQGMQHL 222

Query: 250 QSDALFILLVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVL 309
            +DA F+L+VEKDA + RL +D F +R  PCI+VT KG PD+ TRL ++K+     +PV 
Sbjct: 223 ITDAKFLLIVEKDATFQRLLDDNFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTFHIPVF 282

Query: 310 ALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTE 369
            LVD+DPYG++I+ +Y  GS +MS+++ NLT P I+WLG+ PSD+ +  IP+   +P+T+
Sbjct: 283 TLVDADPYGIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPLTK 342

Query: 370 QDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQK 421
            D      +L+  ++   P W +EL +M  +K KAEIQAL+     YLS VYLP KL+  
Sbjct: 343 HDQMKLDSILKRPYITYQPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPNKLRFG 396

[Close]

BLAST of Lsi01G013700 vs. ExPASy TrEMBL
Match: A0A6J1GGP2 (DNA topoisomerase 6 subunit A OS=Cucurbita moschata OX=3662 GN=LOC111453780 PE=3 SV=1)

HSP 1 Score: 795.4 bits (2053), Expect = 1.1e-226
Identity = 409/420 (97.38%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSELNPDGEAQLPFK+SLK DSIILQILKEFSD STA SSSSSKTLD+LGLS
Sbjct: 1   MADKRKRRRSELNPDGEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. ExPASy TrEMBL
Match: A0A6J1IM23 (DNA topoisomerase 6 subunit A OS=Cucurbita maxima OX=3661 GN=LOC111477696 PE=3 SV=1)

HSP 1 Score: 793.5 bits (2048), Expect = 4.3e-226
Identity = 409/420 (97.38%), Postives = 414/420 (98.57%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSELNPD EAQLPFK+SLK DSIILQILKEFSD STA SSSSSKTLD+LGLS
Sbjct: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. ExPASy TrEMBL
Match: A0A5A7TWM5 (DNA topoisomerase 6 subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=TOP6A PE=3 SV=1)

HSP 1 Score: 789.3 bits (2037), Expect = 8.1e-225
Identity = 406/420 (96.67%), Postives = 413/420 (98.33%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSELNP+ EAQLPFK+ LK DS ILQILKE SDSS  SSSSSSKTLD+LGLS
Sbjct: 1   MADKRKRRRSELNPEDEAQLPFKNKLKADSFILQILKELSDSSAVSSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIES+ILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. ExPASy TrEMBL
Match: A0A6J1CR74 (DNA topoisomerase 6 subunit A OS=Momordica charantia OX=3673 GN=LOC111013584 PE=3 SV=1)

HSP 1 Score: 789.3 bits (2037), Expect = 8.1e-225
Identity = 406/420 (96.67%), Postives = 413/420 (98.33%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSELNPD EAQLPFK+ LK DS ILQI+KEF D STA SSSSSKTL++LGLS
Sbjct: 1   MADKRKRRRSELNPDDEAQLPFKNRLKPDSAILQIIKEFGDCSTAPSSSSSKTLEDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           S+CREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  STCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCMKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. ExPASy TrEMBL
Match: A0A1S3BGY2 (DNA topoisomerase 6 subunit A OS=Cucumis melo OX=3656 GN=LOC103489716 PE=3 SV=1)

HSP 1 Score: 789.3 bits (2037), Expect = 8.1e-225
Identity = 406/420 (96.67%), Postives = 413/420 (98.33%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSELNP+ EAQLPFK+ LK DS ILQILKE SDSS  SSSSSSKTLD+LGLS
Sbjct: 1   MADKRKRRRSELNPEDEAQLPFKNKLKADSFILQILKELSDSSAVSSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIES+ILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. NCBI nr
Match: XP_038881252.1 (DNA topoisomerase 6 subunit A [Benincasa hispida])

HSP 1 Score: 798.9 bits (2062), Expect = 2.1e-227
Identity = 412/420 (98.10%), Postives = 416/420 (99.05%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSE NPDGEAQLPFK SLK DS ILQILKEFSDSSTASSSSSSKTLD+LGLS
Sbjct: 1   MADKRKRRRSEPNPDGEAQLPFKKSLKPDSFILQILKEFSDSSTASSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIES+ILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. NCBI nr
Match: XP_023544835.1 (DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo] >XP_023544836.1 DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo] >XP_023544837.1 DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo] >XP_023544838.1 DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 795.4 bits (2053), Expect = 2.3e-226
Identity = 409/420 (97.38%), Postives = 414/420 (98.57%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSELNPDGE QLPFK+SLK DSIILQILKEFSD STA SSSSSKTLD+LGLS
Sbjct: 1   MADKRKRRRSELNPDGEVQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. NCBI nr
Match: XP_022950775.1 (DNA topoisomerase 6 subunit A [Cucurbita moschata] >KAG6603699.1 DNA topoisomerase 6 subunit A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033876.1 DNA topoisomerase 6 subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 795.4 bits (2053), Expect = 2.3e-226
Identity = 409/420 (97.38%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSELNPDGEAQLPFK+SLK DSIILQILKEFSD STA SSSSSKTLD+LGLS
Sbjct: 1   MADKRKRRRSELNPDGEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. NCBI nr
Match: XP_022977345.1 (DNA topoisomerase 6 subunit A [Cucurbita maxima])

HSP 1 Score: 793.5 bits (2048), Expect = 8.9e-226
Identity = 409/420 (97.38%), Postives = 414/420 (98.57%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSELNPD EAQLPFK+SLK DSIILQILKEFSD STA SSSSSKTLD+LGLS
Sbjct: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. NCBI nr
Match: XP_022143741.1 (DNA topoisomerase 6 subunit A [Momordica charantia])

HSP 1 Score: 789.3 bits (2037), Expect = 1.7e-224
Identity = 406/420 (96.67%), Postives = 413/420 (98.33%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSSTASSSSSSKTLDELGLS 60
           MADKRKRRRSELNPD EAQLPFK+ LK DS ILQI+KEF D STA SSSSSKTL++LGLS
Sbjct: 1   MADKRKRRRSELNPDDEAQLPFKNRLKPDSAILQIIKEFGDCSTAPSSSSSKTLEDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           S+CREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  STCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRKSTITTRI+QLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCMKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Lsi01G013700 vs. TAIR 10
Match: AT5G02820.1 (Spo11/DNA topoisomerase VI, subunit A protein )

HSP 1 Score: 701.8 bits (1810), Expect = 3.3e-202
Identity = 359/429 (83.68%), Postives = 395/429 (92.07%), Query Frame = 0


Query: 1   MADKRKRRRSELNPDGEAQLPFKSSLKHDSIILQILKEFSDSS---------TASSSSSS 60
           MADK+KR+RS+   D   +LPFKS L+ D +I ++LK +  SS          +SSSS  
Sbjct: 1   MADKKKRKRSK--DDEAEELPFKSILESDDVITELLKSYISSSIKAAAGAGGASSSSSKP 60

Query: 61  KTLDELGLSSSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVP 120
            TL +L LSSSCREV DLSLSSVQ+ IE++I++IARSIL+G+GF+F VPSR+A+NQLYVP
Sbjct: 61  LTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVP 120

Query: 121 ELDRIVLKDKTALRPYANISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFYTDVKLFQD 180
           ELDRIVLKDK+ LRP+A++S+VRK+TITTRI+ L+HQLCL+NIHVTKRDLFYTDVKLFQD
Sbjct: 121 ELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQD 180

Query: 181 QTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240
           QTQSD+VLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN
Sbjct: 181 QTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240

Query: 241 IDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300
           IDRVGDMQSDA+FILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME
Sbjct: 241 IDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300

Query: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360
           LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC
Sbjct: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360

Query: 361 RLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLP 420
           RLPMTEQDIKTGKD+LEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYLSEVYLP
Sbjct: 361 RLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLP 420

[Close]

BLAST of Lsi01G013700 vs. TAIR 10
Match: AT3G13170.1 (Spo11/DNA topoisomerase VI, subunit A protein )

HSP 1 Score: 220.3 bits (560), Expect = 2.9e-57
Identity = 123/314 (39.17%), Postives = 183/314 (58.28%), Query Frame = 0


Query: 111 PELDRIVLKDKTALRPYANISTVRKSTIT------TRIIQLVHQLCLKNIHVTKRDLFYT 170
           PE D +   DK   +    I T++K   T       R++ +V QL  +N H +KRD++Y 
Sbjct: 48  PEADCLCSSDKPKGQ---EIFTLKKEPQTYRIDMLLRVLLIVQQLLQENRHASKRDIYYM 107

Query: 171 DVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMG 230
               F+ Q+  D  + D+  +  C+R +LNV++   G+V+G L F + G   DC      
Sbjct: 108 HPSAFKAQSIVDRAIGDICILFQCSRYNLNVVSVGNGLVMGWLKFREAGRKFDCLNSLNT 167

Query: 231 GKAIPPNIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLF 290
              +P  ++ V D+ S A +IL+VEK+  + RLA D F     CI++T +G PDV+TR F
Sbjct: 168 AYPVPVLVEEVEDIVSLAEYILVVEKETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRF 227

Query: 291 LRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDK 350
           LR +  +L LPV  LVD DPYG +IL+ Y  GS  M+YD  +L  PD+KWLG  PSD + 
Sbjct: 228 LRLLMEKLHLPVHCLVDCDPYGFEILATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEV 287

Query: 351 YKIPEQCRLPMTEQDIKTGKDLLEEDFVKKN-PGWVEELTLMVKTKQKAEIQALSSFGFQ 410
           Y +P+QC LP+TE+D K  + +L   ++K+  P W  EL  M+K   K EI+ALS     
Sbjct: 288 YSVPKQCLLPLTEEDKKRTEAMLLRCYLKREMPQWRLELETMLKRGVKFEIEALSVHSLS 347

Query: 411 YLSEVYLPLKLQQK 418
           +LSEVY+P K++++
Sbjct: 348 FLSEVYIPSKIRRE 358

[Close]

BLAST of Lsi01G013700 vs. TAIR 10
Match: AT1G63990.1 (sporulation 11-2 )

HSP 1 Score: 190.3 bits (482), Expect = 3.2e-48
Identity = 118/360 (32.78%), Postives = 200/360 (55.56%), Query Frame = 0


Query: 75  QSTIESLILKIARSILSGNGFAFDVP------SRSAANQLYVPELDRIVLKDKTALRPYA 134
           ++ IE  +L + R + S +    D+       S S  N+  + ++  I L          
Sbjct: 30  RARIEVSVLNLLRILNSPDPAISDLSLINRKRSNSCINKGILTDVSYIFLSTSFTKSSLT 89

Query: 135 NISTVRKSTITTRIIQLVHQLCLKNIHVTKRDLFY----TDVKLFQDQTQSDSVLDDVSC 194
           N  T +      +++++  Q+ L+   VT+R+LFY         F  Q + +  + DV  
Sbjct: 90  NAKTAKAFVRVWKVMEICFQILLQEKRVTQRELFYKLLCDSPDYFSSQIEVNRSVQDVVA 149

Query: 195 ILGCTRSSLNVIAAEKGVVVGRLIFSDNG-DMIDCTKMGMGGKAIPPNIDRVGD--MQSD 254
           +L C+R SL ++A+ +G+V GRL   + G + +DC+  G  G AI  +++ + +  M++D
Sbjct: 150 LLRCSRYSLGIMASSRGLVAGRLFLQEPGKEAVDCSACGSSGFAITGDLNLLDNTIMRTD 209

Query: 255 ALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMEL-KLPVLALV 314
           A +I++VEK A + RL EDR +N  PC+ +TAKG PD+ATR FL +M      LP+L LV
Sbjct: 210 ARYIIIVEKHAIFHRLVEDRVFNHIPCVFITAKGYPDIATRFFLHRMSTTFPDLPILVLV 269

Query: 315 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 374
           D +P GL IL  +  GS  M  ++      ++KW+G+R  DL+   IPE+  +P+  +D 
Sbjct: 270 DWNPAGLAILCTFKFGSIGMGLEAYRYAC-NVKWIGLRGDDLN--LIPEESLVPLKPKDS 329

Query: 375 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           +  K LL    +++N  ++EEL+LMV+T ++AEI+AL   G+ YL + Y+  K+ Q  ++
Sbjct: 330 QIAKSLLSSKILQEN--YIEELSLMVQTGKRAEIEALYCHGYNYLGK-YIATKIVQGKYI 383

The following BLAST results are available for this feature:

BLAST of Lsi01G013700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ03	4.6e-201	83.68	DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana OX=3702 GN=TOP6A PE=1 SV=1	[more]
A2XFC1	1.8e-160	70.76	DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 ...	[more]
Q0DSV9	1.8e-160	70.76	Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-3 P...	[more]
Q9Y5K1	1.4e-64	36.06	Meiotic recombination protein SPO11 OS=Homo sapiens OX=9606 GN=SPO11 PE=1 SV=1	[more]
Q9WTK8	3.1e-64	36.91	Meiotic recombination protein SPO11 OS=Mus musculus OX=10090 GN=Spo11 PE=1 SV=2	[more]

BLAST of Lsi01G013700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGP2	1.1e-226	97.38	DNA topoisomerase 6 subunit A OS=Cucurbita moschata OX=3662 GN=LOC111453780 PE=3...	[more]
A0A6J1IM23	4.3e-226	97.38	DNA topoisomerase 6 subunit A OS=Cucurbita maxima OX=3661 GN=LOC111477696 PE=3 S...	[more]
A0A5A7TWM5	8.1e-225	96.67	DNA topoisomerase 6 subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=TOP6A PE...	[more]
A0A6J1CR74	8.1e-225	96.67	DNA topoisomerase 6 subunit A OS=Momordica charantia OX=3673 GN=LOC111013584 PE=...	[more]
A0A1S3BGY2	8.1e-225	96.67	DNA topoisomerase 6 subunit A OS=Cucumis melo OX=3656 GN=LOC103489716 PE=3 SV=1	[more]

BLAST of Lsi01G013700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881252.1	2.1e-227	98.10	DNA topoisomerase 6 subunit A [Benincasa hispida]	[more]
XP_023544835.1	2.3e-226	97.38	DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo] >XP_023544836.1 DNA t...	[more]
XP_022950775.1	2.3e-226	97.38	DNA topoisomerase 6 subunit A [Cucurbita moschata] >KAG6603699.1 DNA topoisomera...	[more]
XP_022977345.1	8.9e-226	97.38	DNA topoisomerase 6 subunit A [Cucurbita maxima]	[more]
XP_022143741.1	1.7e-224	96.67	DNA topoisomerase 6 subunit A [Momordica charantia]	[more]

BLAST of Lsi01G013700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02820.1	3.3e-202	83.68	Spo11/DNA topoisomerase VI, subunit A protein	[more]
AT3G13170.1	2.9e-57	39.17	Spo11/DNA topoisomerase VI, subunit A protein	[more]
AT1G63990.1	3.2e-48	32.78	sporulation 11-2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002815	Spo11/DNA topoisomerase VI subunit A	PRINTS	PR01550	TOP6AFAMILY	coord: 269..290 score: 49.43 coord: 158..169 score: 53.65 coord: 172..189 score: 39.24 coord: 301..317 score: 55.15 coord: 190..205 score: 44.92 coord: 245..262 score: 51.04
IPR002815	Spo11/DNA topoisomerase VI subunit A	PANTHER	PTHR10848	MEIOTIC RECOMBINATION PROTEIN SPO11	coord: 46..420
IPR004085	DNA topoisomerase VI, subunit A	PRINTS	PR01552	TPISMRASE6A	coord: 391..414 score: 42.19 coord: 166..183 score: 32.64 coord: 275..295 score: 47.62 coord: 100..120 score: 30.95 coord: 219..237 score: 34.87
IPR004085	DNA topoisomerase VI, subunit A	HAMAP	MF_00132	Top6A	coord: 68..420 score: 36.478775
IPR013049	Spo11/DNA topoisomerase VI, subunit A, N-terminal	PFAM	PF04406	TP6A_N	coord: 134..195 e-value: 1.8E-20 score: 72.6
None	No IPR available	GENE3D	3.40.1360.10		coord: 199..420 e-value: 3.5E-78 score: 264.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR10848:SF4	DNA TOPOISOMERASE 6 SUBUNIT A	coord: 46..420
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 60..198 e-value: 1.9E-38 score: 133.6
IPR034136	Topoisomerase 6 subunit A/Spo11, TOPRIM domain	CDD	cd00223	TOPRIM_TopoIIB_SPO	coord: 244..404 e-value: 3.05215E-72 score: 222.13
IPR036078	Spo11/DNA topoisomerase VI subunit A superfamily	SUPERFAMILY	56726	DNA topoisomerase IV, alpha subunit	coord: 134..420

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G013700.1	Lsi01G013700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006265	DNA topological change
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0000706	meiotic DNA double-strand break processing
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0009330	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
cellular_component	GO:0000228	nuclear chromosome
cellular_component	GO:0005694	chromosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003824	catalytic activity