Lcy13g015310 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g015310
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr13: 37577623 .. 37579828 (-)
RNA-Seq ExpressionLcy13g015310
SyntenyLcy13g015310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATAAGACTGTGGGTTTGGTCTAATTTATAAGATTAATCAATCAAAAGTTTTATATATGATTTTGTTCTTATTGATATTTAAGAATTGTTAGAATTCGTATACAACAATAGTTTCATTTATTTTTCGTAAATGGAATATAGAGAAAGCTAATGGGGTAATAGTTGGTGAGGAAATAATATTGAAAGTCAAGCACATGTAGAATTTCAAGAACAAAACAAAAGTCATCTTGAAGATTTGATACGAAAATCTAGCCAAGTGCTTTGGATGTGTTGAAAGAGAAAGAAAGCTCCTAGATTATGAATACATGACAACAAAGTAAAGTTTCTCATTAATTTTTGGAAGAAGAGTTAATTTACGGTGGGAGAGTGAAAAAAAAAAAGAAGCATTTTTCAATAAGGGTATTTTTTAATTTTGTTTTAAAGTTCAAGGGTATTTTTGAAACTCAAACTTTAACGGTTTCCATCCAAAATTAACGGCAAGGATATTTTTTAAACATTTTTCAAAGTTCATGGGCATTTTTGAAACTTTTTAAAGTTCAGGGGCATTTTTGAAACAAACCCCATAGTTCAGGTGTATTTTTTATAATTTAGCCATTTTGTTATTGAGTTCAAGAAATGTGAGGAAGAATAATGAATTTGATTCACTTTCGATTTTAGTAAATTGAAGTATAAAAGGTTATAATTAAATAATAGGAGTTATTAAAAAAAAACATATAATATATAATTTTGTTGGGTTTTATGTCCTAAAACTCATAGTTTGTAATCTTTTTGCAATAAATATGTTATTGTATTATTCAGTGAATTGCTTGTTTATATATAACCTAAATCCAATAGATAAACATCTTTGGTTATAACATGAAATACTCGAACTATATGTGCAAATATAGATAGGGATCAAGTTCGAGTATGTAACCTAAATGGTCTATAGTATAGGGATAAGACTAGGTACCTTATCCTGGCAACACTATGGATGCGACCTACTTTGCGAACAAGACAAACGATGTGATCCTGGATCGTTCATGTGGAGACATGCCAGTAGGGGCATCCTGTGTAAATGAGTTTGCACAAGATCGAACCAAGAAATAAGTCACTCTTATTTTATAACGTCATTTACTACTAAATGAGTTCGTGATTAGTTGGTGAGGAAAAACAACACAACAATTGGTCCAATTTTGAGCTACAAAGAGGTTGGTATTCAAAACTCAGTTTTAGTAGCTTTGGACAACATGTTTTGTATGATCAAATTGATGTTATTATGTGCCTAAGATCCAAAATTGCTTTCGCGTGTTAGATATTAACACCTTCAAATTTATCATTTAAATCTAAATTTCAACTAAAATTTTCGTATAACATAAAATTAAATTCTAATTTATCTATATAGAAAATAATAAGATGTTGAAACTTTATGCTTCTGTTCATTAAATTTAATATAATTTATCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTACTATTTTCTCAATGTTTTCATTTATTTGTATTTTAAAATAAACTACAAATTTCACGTGCTATGCACGTGTTTGCCTACTAGTCTATACTAAACATCTACCTATTAAATTAAAAATAATAATAATTTGACTTTATAGTTTAGATTGGTTTGATAAAATTTGAAGTTTTATTTTTATCTTATTACTTTTCATATTATCATTTTAGATTAGATAGTTCTCCTTACTTAATTGATTGTAGATAAACATGCCAAATTTACTTTTGAAAATTTTCCATCCAATGAAAATAATGGTTAACTGTTTTGTATTTTTTAATTATACTAGTCTTTAAAACGTGCTATGCACGTTATATTTTCATTTTATACACTAATTTAAATTTTCATTAAGAAGTCTAAATTTTTTTTATGATACTTATTGGATAGATGTGAATGGATTAATGACTACCTGGAAGAATTCTTGAAGGCTAATCCGAGGTCTATTACTCCGACTCAGAAAATGGATGACGTTGGTAAAATAATTTCTGAGGACGAGAATTTGATTATGCATACAGATGCATCTGTTGTGGCAGGACAGTATACATGTGGTTTGGGGATTGTGATGCGTGATAGATTCGGCAATTTACAGGCGGTGAGAAATGCTTGTGCTACAGTGTTCTCATCTCCTTTGGAAGCGGAAGCGTTGGCGGTGCTTGAAGGGATGCATTTGGCAACAATGTTGAATGCGTGA

mRNA sequence

ATGTTTATAAGACTATGTGAATGGATTAATGACTACCTGGAAGAATTCTTGAAGGCTAATCCGAGGTCTATTACTCCGACTCAGAAAATGGATGACGTTGGTAAAATAATTTCTGAGGACGAGAATTTGATTATGCATACAGATGCATCTGTTGTGGCAGGACAGTATACATGTGGTTTGGGGATTGTGATGCGTGATAGATTCGGCAATTTACAGGCGGTGAGAAATGCTTGTGCTACAGTGTTCTCATCTCCTTTGGAAGCGGAAGCGTTGGCGGTGCTTGAAGGGATGCATTTGGCAACAATGTTGAATGCGTGA

Coding sequence (CDS)

ATGTTTATAAGACTATGTGAATGGATTAATGACTACCTGGAAGAATTCTTGAAGGCTAATCCGAGGTCTATTACTCCGACTCAGAAAATGGATGACGTTGGTAAAATAATTTCTGAGGACGAGAATTTGATTATGCATACAGATGCATCTGTTGTGGCAGGACAGTATACATGTGGTTTGGGGATTGTGATGCGTGATAGATTCGGCAATTTACAGGCGGTGAGAAATGCTTGTGCTACAGTGTTCTCATCTCCTTTGGAAGCGGAAGCGTTGGCGGTGCTTGAAGGGATGCATTTGGCAACAATGTTGAATGCGTGA

Protein sequence

MFIRLCEWINDYLEEFLKANPRSITPTQKMDDVGKIISEDENLIMHTDASVVAGQYTCGLGIVMRDRFGNLQAVRNACATVFSSPLEAEALAVLEGMHLATMLNA
Homology
The following BLAST results are available for this feature:
BLAST of Lcy13g015310 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g015310 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g015310 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g015310 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 47..101
e-value: 4.5E-5
score: 23.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g015310.1Lcy13g015310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity