Lcy13g015300 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g015300
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S13
Location	Chr13: 37564193 .. 37565148 (+)
RNA-Seq Expression	Lcy13g015300
Synteny	Lcy13g015300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTGACTTAATAGTTGTAACATAACTTATAAATGTTGATTCCTTGTAAATTTATCATTGTGTGTTTTTTTCTTCTCGCTGAAAAAGAATCCCAAATTTTTTTCTGGGAGTTAGCATTGTGCCCACCCCCCACACGTCCCCCCATATGGTAATGATGCAATGTCATTCTTTCAATGATCAAGGACACTACTCTGTTAACTCCAACAACAGTAGATCTATATTTTCATATTCTTTTCAACTTATTAGTGCTATATAGTATCCTGGCCACTTACTAGTTACTCAAATGAACACTCCTTGCAATGAACCTCTTGATTTTATATTTTATACTAACATTTATACTCTTTTCTGCAGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGGGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTTGCATTAGTTGCGTTGTTAACTTCTTCATTGAAATCAGCTTTCAGTATACTTTGCTCATAGCAGATAGGGTCCCATTGAAAATTACCAGGAAGATAAAAGAGGTTGTAAAAGATTGCTCATGTGATTGGCTAACGATGAAAATTACAGTCCTTGATTTTAGTGAAGCATGGTGACATGTTTTTTAGTGTCATCTGAGTGTCAATTCTGATGGTTATACTTGTCGAATGTCTAAGAAAATCGCAAGTTCTTCCATTGCTTGTCATTTTAACTGCTTAGAAAGGGAAGTGAATCTTTGTACTATCTATAGAAATTGATGGCTTTCCTTTGACCATTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGATGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCTCATCTACCCTTCCTCCATTGA

mRNA sequence

ATGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGGGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGATGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCTCATCTACCCTTCCTCCATTGA

Coding sequence (CDS)

ATGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGGGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGATGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCTCATCTACCCTTCCTCCATTGA

Protein sequence

MRCNHYTKSFRRINAKQTLLGNVSAYAEFLFQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHGEPHLPFLH

Homology

[Close]

BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-17
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V ENICKFAKKGLTPS+I VILRDSHGIAQV SVTGSKILRILKAHG  P +P
Sbjct: 33 VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.8e-17
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E ICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E+ICKFAKKGLTPS+I VILRDSHGI QVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E+ICKFAKKGLTPS+I VILRDSHGI QVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot
Match: Q56JX8 (40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E I K AKKGLTPS+I VILRDSHG+AQV+ VTG+KILRILK+ G  P LP
Sbjct: 33 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLP 85

[Close]

BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A6A6MFQ6 (Ribosomal_S13_N domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_026488 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.9e-17
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 31 FQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          FQV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 8  FQVQENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 62

[Close]

BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A1S4D890 (30S ribosomal protein S15, chloroplastic OS=Nicotiana tabacum OX=4097 GN=LOC107827027 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 31 FQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          FQV +NICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 5  FQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 59

[Close]

BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A218WH84 (Ribosomal_S13_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr017751 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-16
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 32 QVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          QV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 4  QVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 57

[Close]

BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A1U8FP47 (30S ribosomal protein S15, chloroplastic OS=Capsicum annuum OX=4072 GN=LOC107857105 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-16
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 30 LFQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          L QV +NICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 5  LLQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 60

[Close]

BLAST of Lcy13g015300 vs. ExPASy TrEMBL
Match: A0A7J9A571 (Ribosomal_S13_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_006711 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-16
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 32 QVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          QV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 26 QVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 79

[Close]

BLAST of Lcy13g015300 vs. NCBI nr
Match: KAF3778142.1 (40S ribosomal protein S13-2 [Nymphaea thermarum])

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-16
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 32 QVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHGEPHLPF 86
          +V ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  +LP+
Sbjct: 4  RVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGTSYLPY 57

[Close]

BLAST of Lcy13g015300 vs. NCBI nr
Match: KAF2311747.1 (hypothetical protein GH714_026488 [Hevea brasiliensis])

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-16
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 31 FQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          FQV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 8  FQVQENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 62

[Close]

BLAST of Lcy13g015300 vs. NCBI nr
Match: XP_016509568.1 (PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum])

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 31 FQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          FQV +NICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 5  FQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 59

[Close]

BLAST of Lcy13g015300 vs. NCBI nr
Match: XP_009596116.1 (40S ribosomal protein S13-like [Nicotiana tomentosiformis])

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 30 LFQVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          +FQV +NICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 5  VFQVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 60

[Close]

BLAST of Lcy13g015300 vs. NCBI nr
Match: MBA0719002.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 93.6 bits (231), Expect = 9.1e-16
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 32 QVAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          QV ENICKFAKKGLTPS+I VILRDSHGIAQVKSVTGSKILRILKAHG  P +P
Sbjct: 26 QVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 79

[Close]

BLAST of Lcy13g015300 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 87.0 bits (214), Expect = 7.9e-18
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E+ICKFAKKGLTPS+I VILRDSHGI QVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy13g015300 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 87.0 bits (214), Expect = 7.9e-18
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 33 VAENICKFAKKGLTPSEIDVILRDSHGIAQVKSVTGSKILRILKAHG-EPHLP 85
          V E+ICKFAKKGLTPS+I VILRDSHGI QVKSVTGSKILRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

The following BLAST results are available for this feature:

BLAST of Lcy13g015300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	2.2e-17	84.91	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P46298	3.8e-17	84.91	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	1.1e-16	83.02	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	1.1e-16	83.02	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
Q56JX8	1.7e-12	71.70	40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3	[more]

BLAST of Lcy13g015300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A6MFQ6	8.9e-17	87.27	Ribosomal_S13_N domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714...	[more]
A0A1S4D890	2.0e-16	85.45	30S ribosomal protein S15, chloroplastic OS=Nicotiana tabacum OX=4097 GN=LOC1078...	[more]
A0A218WH84	4.4e-16	87.04	Ribosomal_S13_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_P...	[more]
A0A1U8FP47	4.4e-16	83.93	30S ribosomal protein S15, chloroplastic OS=Capsicum annuum OX=4072 GN=LOC107857...	[more]
A0A7J9A571	4.4e-16	87.04	Ribosomal_S13_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_0...	[more]

BLAST of Lcy13g015300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3778142.1	1.8e-16	85.19	40S ribosomal protein S13-2 [Nymphaea thermarum]	[more]
KAF2311747.1	1.8e-16	87.27	hypothetical protein GH714_026488 [Hevea brasiliensis]	[more]
XP_016509568.1	4.1e-16	85.45	PREDICTED: 40S ribosomal protein S13-like, partial [Nicotiana tabacum]	[more]
XP_009596116.1	4.1e-16	83.93	40S ribosomal protein S13-like [Nicotiana tomentosiformis]	[more]
MBA0719002.1	9.1e-16	87.04	hypothetical protein [Gossypium laxum]	[more]

BLAST of Lcy13g015300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	7.9e-18	83.02	Ribosomal protein S13/S15	[more]
AT4G00100.1	7.9e-18	83.02	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..60 e-value: 0.0051 score: 13.0
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 32..60 e-value: 2.5E-9 score: 37.1
None	No IPR available	GENE3D	4.10.860.130		coord: 35..81 e-value: 1.0E-24 score: 88.0
None	No IPR available	PANTHER	PTHR11885:SF24	40S RIBOSOMAL PROTEIN S13	coord: 32..82
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 32..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g015300.1	Lcy13g015300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome