Lcy13g010700 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g010700
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr13: 11419201 .. 11419908 (+)
RNA-Seq Expression	Lcy13g010700
Synteny	Lcy13g010700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGGAGGATCAAGCCGACGAACAACCTGGGGAAGAAACAGAAGAAGCAAACAACCCTGAGATGGAGGAGATGAATATGGAGAATGTCTTCAAGCAGACAACCATCATCCACGATGAAGAACCTGCCGAGTCATGAGAATTGGACCCCCCCCCCCCCCCCCCCGAGTAAGCTTGGAAGATTAACGTCGACGCCTCCTGGTGCGATAATCGAAAAATGGGAGGCGTAGGATGGATTCTCCGTGACTCTTCAGGGTCTTCGCTTTGCTTGGGCTATAAACGGATCCGAAGCAGCTGGTCAGTCAAATTGCTGGAATTAAAAGCCATTGTCAAGGGTCTGAAATGCCTATCTTCCTCAGGTGTGCGTGAAGCCCCTCCGATCGCAATCCCCATTGTGGTTGAATCCGACGCCGTCTCTGTGGTGAAGTTGTTAAACGTGGAAGAAGATGACATTTCTGAAATTTCTCTCATGGTGGAAGAGATTAACGTGCTAAAGAAATCTTTTGTGGATATTACCTTTGCTTATTGCCCTAGGAGATGCAATGCCGCTGTTGATCGTCTGGCTCGCATGGCTTGCTCGTCTCCGGTGGAATTCGTTTTGGCCTCCCCTCCTCCCACCGTAGAGGAAGAGGGATTTTTGTGGGGACCTCCTCCTTTTTGTATTAAAAAACTCCTCGTTGGTGTATCTAATTATTCAGTTCTTTAA

mRNA sequence

ATGTTGAAGGAGGATCAAGCCGACGAACAACCTGGGGAAGAAACAGAAGAAGCAAACAACCCTGAGATGGAGGAGATGAATATGGAGAATGTCTTCAAGCAGACAACCATCATCCACGATGAAGAACCTGCCGACAGCTGGTCAGTCAAATTGCTGGAATTAAAAGCCATTGTCAAGGGTCTGAAATGCCTATCTTCCTCAGGTGTGCGTGAAGCCCCTCCGATCGCAATCCCCATTGTGGTTGAATCCGACGCCGTCTCTGTGGTGAAGTTGTTAAACGTGGAAGAAGATGACATTTCTGAAATTTCTCTCATGGTGGAAGAGATTAACGTGCTAAAGAAATCTTTTGTGGATATTACCTTTGCTTATTGCCCTAGGAGATGCAATGCCGCTGTTGATCGTCTGGCTCGCATGGCTTGCTCGTCTCCGGTGGAATTCGTTTTGGCCTCCCCTCCTCCCACCGTAGAGGAAGAGGGATTTTTGTGGGGACCTCCTCCTTTTTGTATTAAAAAACTCCTCGTTGGTGTATCTAATTATTCAGTTCTTTAA

Coding sequence (CDS)

ATGTTGAAGGAGGATCAAGCCGACGAACAACCTGGGGAAGAAACAGAAGAAGCAAACAACCCTGAGATGGAGGAGATGAATATGGAGAATGTCTTCAAGCAGACAACCATCATCCACGATGAAGAACCTGCCGACAGCTGGTCAGTCAAATTGCTGGAATTAAAAGCCATTGTCAAGGGTCTGAAATGCCTATCTTCCTCAGGTGTGCGTGAAGCCCCTCCGATCGCAATCCCCATTGTGGTTGAATCCGACGCCGTCTCTGTGGTGAAGTTGTTAAACGTGGAAGAAGATGACATTTCTGAAATTTCTCTCATGGTGGAAGAGATTAACGTGCTAAAGAAATCTTTTGTGGATATTACCTTTGCTTATTGCCCTAGGAGATGCAATGCCGCTGTTGATCGTCTGGCTCGCATGGCTTGCTCGTCTCCGGTGGAATTCGTTTTGGCCTCCCCTCCTCCCACCGTAGAGGAAGAGGGATTTTTGTGGGGACCTCCTCCTTTTTGTATTAAAAAACTCCTCGTTGGTGTATCTAATTATTCAGTTCTTTAA

Protein sequence

MLKEDQADEQPGEETEEANNPEMEEMNMENVFKQTTIIHDEEPADSWSVKLLELKAIVKGLKCLSSSGVREAPPIAIPIVVESDAVSVVKLLNVEEDDISEISLMVEEINVLKKSFVDITFAYCPRRCNAAVDRLARMACSSPVEFVLASPPPTVEEEGFLWGPPPFCIKKLLVGVSNYSVL

Homology

The following BLAST results are available for this feature:

BLAST of Lcy13g010700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g010700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g010700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g010700 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 45..139 e-value: 7.5E-13 score: 48.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 19..144 e-value: 7.4E-9 score: 37.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 53..137 e-value: 2.18536E-13 score: 61.5612
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 47..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g010700.1	Lcy13g010700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity