Lcy13g008930 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g008930
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR4
Location	Chr13: 8783562 .. 8783756 (+)
RNA-Seq Expression	Lcy13g008930
Synteny	Lcy13g008930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGGAGACGGCGGATCTATGCCGCACGCCGCGACGGAGGAGCTGCCGGATCCCGGTGTGCCCGGCCGCGCCGAGGAAGAAACCGGTTTGCTTGAAGCGGAAGGCTCCGCCCAAGGACGGCTACTTTCGCCCGCCGGATTTGGAGGTTTTGTTCGGTTTTATCGCAACCAGAGGAGAGCCTTGTGGTTGA

mRNA sequence

ATGGCGGAGGAGACGGCGGATCTATGCCGCACGCCGCGACGGAGGAGCTGCCGGATCCCGGTGTGCCCGGCCGCGCCGAGGAAGAAACCGGTTTGCTTGAAGCGGAAGGCTCCGCCCAAGGACGGCTACTTTCGCCCGCCGGATTTGGAGGTTTTGTTCGGTTTTATCGCAACCAGAGGAGAGCCTTGTGGTTGA

Coding sequence (CDS)

ATGGCGGAGGAGACGGCGGATCTATGCCGCACGCCGCGACGGAGGAGCTGCCGGATCCCGGTGTGCCCGGCCGCGCCGAGGAAGAAACCGGTTTGCTTGAAGCGGAAGGCTCCGCCCAAGGACGGCTACTTTCGCCCGCCGGATTTGGAGGTTTTGTTCGGTTTTATCGCAACCAGAGGAGAGCCTTGTGGTTGA

Protein sequence

MAEETADLCRTPRRRSCRIPVCPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIATRGEPCG

Homology

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BLAST of Lcy13g008930 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1  MAEETADLCRTPRRRSCRIP---VCPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIA 60
          MAEE    C TPR    RIP   VCP  PRKK + ++++ PP++GYF+PPDLE LF +  
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 TRGEPC 64
           R E C
Sbjct: 70 PRREAC 71

[Close]

BLAST of Lcy13g008930 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.5e-06
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 9  CRTPRRRSCRIPV---CPAAPRKKPVCL---KRKAPPKDGYFRPPDLEVLFGFIA 58
          C TP R  CRIP    CP   R+K   L   K++ PPK GYF+PPDL++ F  +A
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVA 76

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BLAST of Lcy13g008930 vs. ExPASy TrEMBL
Match: A0A0A0KS84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-22
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MAEETADLCRTPRRRSCRIPV---CPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIA 60
          MAEET +LCRTPRRRSCRIPV   CP+APRKKPVCLKRKAPPK+GYFR PDLEVLFGF+ 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 TRGEPC 64
           R E C
Sbjct: 61 PREEAC 66

[Close]

BLAST of Lcy13g008930 vs. ExPASy TrEMBL
Match: A0A5N6QF01 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-10
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 9  CRTPRRRSCRIP---VCPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIATRGEPC 64
          C TPR   CR+P    CP AP+KKPV  K++APPK+GYF+PPDLE LF  ++  G  C
Sbjct: 14 CGTPRHSGCRLPAAFACPPAPKKKPVYFKQQAPPKNGYFQPPDLEALFAMVSDEGSLC 71

[Close]

BLAST of Lcy13g008930 vs. ExPASy TrEMBL
Match: B9T003 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 9  CRTPRRRSCRIP----VCPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIATRGEPC 64
          CRTP RR CRIP     CP APRKKPV +K++ PPKDGYF+PPDLE  F     R   C
Sbjct: 8  CRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFFLITPRREASC 66

[Close]

BLAST of Lcy13g008930 vs. ExPASy TrEMBL
Match: A0A6S7P9N6 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS34877 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.7e-10
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 5   TADLCRTPRRRSCRIPV-CPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIAT 59
           T D CRTP++  CRIPV CP APRKK   LK+++PP++GYF+PPDLE+LF    T
Sbjct: 67  TEDGCRTPKQSGCRIPVTCPPAPRKKQAYLKQRSPPENGYFQPPDLEILFAMPPT 121

[Close]

BLAST of Lcy13g008930 vs. ExPASy TrEMBL
Match: A0A1U8A7K0 (cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LOC104601057 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-09
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 9  CRTPRRRSCRIP---VCPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIATRGEPC 64
          C TP+ R CRIP   VCP  PRKKP+  K++ PP +GYF+PPDLE+LF  IA R E C
Sbjct: 39 CETPKHRDCRIPMASVCPPPPRKKPIYGKKRDPPTNGYFQPPDLELLFA-IAPRREAC 95

[Close]

BLAST of Lcy13g008930 vs. NCBI nr
Match: KAE8647993.1 (hypothetical protein Csa_021483 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 6.2e-22
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MAEETADLCRTPRRRSCRIPV---CPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIA 60
          MAEET +LCRTPRRRSCRIPV   CP+APRKKPVCLKRKAPPK+GYFR PDLEVLFGF+ 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 TRGEPC 64
           R E C
Sbjct: 61 PREEAC 66

[Close]

BLAST of Lcy13g008930 vs. NCBI nr
Match: KAG6600042.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030712.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 9.0e-21
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1  MAEETADLCRTPRRRSCRIPV---CPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIA 60
          MAEE  D+CRTPRR+SCRIPV   CPAAPRKK V LKRKAPPKDGYFRPPDLEVLFGF+A
Sbjct: 1  MAEEKKDICRTPRRKSCRIPVAVLCPAAPRKKAVSLKRKAPPKDGYFRPPDLEVLFGFVA 60

Query: 61 TRGE 62
           RG+
Sbjct: 61 PRGD 64

[Close]

BLAST of Lcy13g008930 vs. NCBI nr
Match: XP_021655298.1 (cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis])

HSP 1 Score: 77.8 bits (190), Expect = 3.8e-11
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 7  DLCRTPRRRSCRIP---VCPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIATRGEPC 64
          ++C TPRRR  RIP    CP APRKKPV  K+++PPKDGYF+PPDLE LF  IA R E C
Sbjct: 6  EVCNTPRRRESRIPAALACPPAPRKKPVFSKKRSPPKDGYFQPPDLEALF-MIAPRREAC 64

[Close]

BLAST of Lcy13g008930 vs. NCBI nr
Match: KAE7996760.1 (hypothetical protein FH972_001453 [Carpinus fangiana])

HSP 1 Score: 73.9 bits (180), Expect = 5.5e-10
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 9  CRTPRRRSCRIP---VCPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIATRGEPC 64
          C TPR   CR+P    CP AP+KKPV  K++APPK+GYF+PPDLE LF  ++  G  C
Sbjct: 14 CGTPRHSGCRLPAAFACPPAPKKKPVYFKQQAPPKNGYFQPPDLEALFAMVSDEGSLC 71

[Close]

BLAST of Lcy13g008930 vs. NCBI nr
Match: EEF30808.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 73.6 bits (179), Expect = 7.2e-10
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 9  CRTPRRRSCRIP----VCPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIATRGEPC 64
          CRTP RR CRIP     CP APRKKPV +K++ PPKDGYF+PPDLE  F     R   C
Sbjct: 8  CRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFFLITPRREASC 66

[Close]

BLAST of Lcy13g008930 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 7.6e-10
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1  MAEETADLCRTPRRRSCRIP---VCPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIA 60
          MAEE    C TPR    RIP   VCP  PRKK + ++++ PP++GYF+PPDLE LF +  
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 TRGEPC 64
           R E C
Sbjct: 70 PRREAC 71

[Close]

BLAST of Lcy13g008930 vs. TAIR 10
Match: AT3G27630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40460.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 1.6e-04
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 3  EETADLCRTPRRRSCRIPVCPAAPRKKPVCLKRKAPPKDGYFRPP-DLEVLF 54
          E    +C TP  R  + P CPAAPRK+P  LK +   +  YF PP D E++F
Sbjct: 44 ESEDGICITPTARGAKTPECPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Lcy13g008930 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.1e-04
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 4   ETADLC-RTPRRRSCRIPV---CPAAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFIAT 59
           E  DLC  TP   S RIP    CP AP+K+ + LK    P++ +F PPDLE +F +  T
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVFIYRTT 106

The following BLAST results are available for this feature:

BLAST of Lcy13g008930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	1.1e-08	50.00	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	6.5e-06	47.27	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Lcy13g008930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS84	3.0e-22	80.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1	[more]
A0A5N6QF01	2.7e-10	55.17	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1	[more]
B9T003	3.5e-10	59.32	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1	[more]
A0A6S7P9N6	7.7e-10	60.00	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS34877 PE=4 SV=1	[more]
A0A1U8A7K0	3.8e-09	58.62	cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LO...	[more]

BLAST of Lcy13g008930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647993.1	6.2e-22	80.30	hypothetical protein Csa_021483 [Cucumis sativus]	[more]
KAG6600042.1	9.0e-21	81.25	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
XP_021655298.1	3.8e-11	63.33	cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis]	[more]
KAE7996760.1	5.5e-10	55.17	hypothetical protein FH972_001453 [Carpinus fangiana]	[more]
EEF30808.1	7.2e-10	59.32	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of Lcy13g008930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	7.6e-10	50.00	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT3G27630.1	1.6e-04	44.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G60783.1	2.1e-04	44.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142:SF56	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR5	coord: 4..58
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 4..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g008930.1	Lcy13g008930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus