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Lcy13g008150 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTGTGTGTGTGTTCACGTTGATGATAGCCTTCGGCAATTGCCTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCCATTTCTTTATTTCCATACCACTCTGTTCTTCACACCCTTCACAGTTCTTCTTCTTCTTCTTATATAATCCTCTCTTCTTCTTCCCCACCACCATTTTTTTTCCTTACTTACCAAGCTTCTTCCATTCCTCTTTCAATTTCATCGGACGGGTGTTTTGATTCGGCCGGAGACACCCAGAGACCGGAATCGCAGAGTATGACGATGATGAGCAACAATGCAGGTCTGTTCGGCGACACGACGCTGACGAAGGTCTTCGTTGGAGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGCGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTAAGTGTGTATTTCGTTAATTTCTGGAATTGATTCGATCGTTAGGGATTTTGATTGAGTTGAGTTTTTGATTGTTCTGATTTTAGGTCACGTTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGACTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTGGCTTCGCTCGGCGCTCGCCGCGGCTCCCGCTCGGCTTCGGCTACTCCGCCGCAAGGTCCTCAACCAGGTAAAAGTCTCATGAAACTGGTCAATTCGTTACTTGACAATGGCATTTTGGTAATTTCGTTGAAGAAATTGTGTGTAAAATTTTTGACGGTGGAGATCTGAAGTTGGCTTGTGATGAATTGAAGGATCGAACGGCGGTGGGCCGAGAACGACGTCAGCAGGAGCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCGACGCCGTTTCACCATCAGCCTCATCAGGCCGTCCCTTTCTATGGGTATACCTTAAAGATCCTACGCCCTTCCGTATTCTAATATTACCCGTGTTTATACACTTTTATTATTTTTCTTTTGTTGGGTTTTTTCCTTTTTTAAATTAACGTAAATTTCGTTTTCTTTTAGATACTCCCCAAGCCCCACCTACATTGCAACCGATATCAGTTACAACCACGTAAGCCTTCTTATTTTATGCTAAATTATAATTTCCTCTTTTAACTTTTTAGGATTTGTATATAATGGATTCCTAAATTTTCAATTTCATAGGATCATGCAAAATATTTAAAGATTAAGAGATTTATTAGACATAATCTTGAAAAGATCCAAAATATTTAAAAAGAATGCTAAACTATCTCTTATCTGTTACTACTATTAAAAATTTGACAACTTACTTTAAAAAAAAGACCATCTTTTTTCTTGGCATTACTCTCATTATTATCTTTTTCTCGTTAGGATAAAATATGTGACATTTGGAGGTGAGGATTAGAACCATGAACTCTCCCATCAGTAGTATAAAATTAGCTATGCTATCTAAATTTGGATTAGCTTTCCTCAAAAACGTAACGTTACTGGAGTTATGCATTAAAAAGAATTAGAATTATGCATGGGTTGAAATAATGTAATTGGCTAGAATGGTAAGAAAGGAGATTGCTTTGAATATTTTGGTAAACGGCGAGGTTTGTGATGAACAGAAACTGGGCTACATGAACGGGCATTACACGCAGATGTATCCGGGACAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATTCCCTCCCAGTCCCACGGCGGCGGGCCCTTTCGCGGCGGTCCCACCCACTTCCATTATGTCCAAACCGGCCTCCGTTGGTCCCAACCCAGGTCCGTTTTGTTTGAATTCTTCATGAAATCACATCCCCTTTTCCCATTTCCTCTGCTGGGTTGCGTTCTGTTTTGACTATGGACTGTGATAGGATAGGACTTCTAGCCTTTGCCTTTGCCCATTCTTTTGCATGTTCTGAAGAACAAATTTGGTCAACAGTCAAACGTTATTAACAAGAAGAAAAAAAGAAACAAAGAAAAAACAGGCAGCAAAAACAGATCAGAGTCCTTCACGTGAAAGGATGATTTTAGTAAAGGGTCTCCTCCCCCACTGCCAACTGGCCTCCCTGGGTCCCACGTGGCCAGCTCGATCCGCCGGTCGTGCGGTGGTCTTGCTGTCCCTTTCCCATCCTTAATATTCCCCATTATTAAGGACTCTTTTGCAAAACCAACGACTTTTCTAGATTTGTAAATGCTCAGCCTCTGATGGGATCACAAAAATGGTTTCTCAAACATATTTTGATGCATAAAAGCTTAGAATTTTTGGATCTTGTTCAAATTCCGCATTCTTTTCACACTTTTTAAAGCTTAAATCCCAACCCACATCTCTGTGTTATATGATGAATTTGTGGAGTAGATGATGTTGATGTAAATAGAGTGAGATTCATTTGAAAGATGATAGTTAAACTGATATTACAAAGAACAGTTTGCTTGGTTGTGGAATAATAGGTACAGTTGGAGGAGGATGCAGAGGATGATGATGATGATGGTAAAAGAAGAGCAGAGAAGAATTAAATATAAAAGGGGGCAGGCAGGGCAGGCAGGAAGGTTAAGAGGGACTCTATTTTATTTTATTTTTTTAATCTGAACATCTCATTCTCTTAGTACATGGCAGGCAAGAGGG TGTGTGTGTGTGTTCACGTTGATGATAGCCTTCGGCAATTGCCTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCCATTTCTTTATTTCCATACCACTCTGTTCTTCACACCCTTCACAGTTCTTCTTCTTCTTCTTATATAATCCTCTCTTCTTCTTCCCCACCACCATTTTTTTTCCTTACTTACCAAGCTTCTTCCATTCCTCTTTCAATTTCATCGGACGGGTGTTTTGATTCGGCCGGAGACACCCAGAGACCGGAATCGCAGAGTATGACGATGATGAGCAACAATGCAGGTCTGTTCGGCGACACGACGCTGACGAAGGTCTTCGTTGGAGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGCGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTCACGTTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGACTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTGGCTTCGCTCGGCGCTCGCCGCGGCTCCCGCTCGGCTTCGGCTACTCCGCCGCAAGGTCCTCAACCAGGATCGAACGGCGGTGGGCCGAGAACGACGTCAGCAGGAGCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCGACGCCGTTTCACCATCAGCCTCATCAGGCCGTCCCTTTCTATGGATACTCCCCAAGCCCCACCTACATTGCAACCGATATCAGTTACAACCACAAACTGGGCTACATGAACGGGCATTACACGCAGATGTATCCGGGACAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATTCCCTCCCAGTCCCACGGCGGCGGGCCCTTTCGCGGCGGTCCCACCCACTTCCATTATGTCCAAACCGGCCTCCGTTGGTCCCAACCCAGGTACAGTTGGAGGAGGATGCAGAGGATGATGATGATGATGGTAAAAGAAGAGCAGAGAAGAATTAAATATAAAAGGGGGCAGGCAGGGCAGGCAGGAAGGTTAAGAGGGACTCTATTTTATTTTATTTTTTTAATCTGAACATCTCATTCTCTTAGTACATGGCAGGCAAGAGGG ATGATAGCCTTCGGCAATTGCCTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCCATTTCTTTATTTCCATACCACTCTGTTCTTCACACCCTTCACAGTTCTTCTTCTTCTTCTTATATAATCCTCTCTTCTTCTTCCCCACCACCATTTTTTTTCCTTACTTACCAAGCTTCTTCCATTCCTCTTTCAATTTCATCGGACGGGTGTTTTGATTCGGCCGGAGACACCCAGAGACCGGAATCGCAGAGTATGACGATGATGAGCAACAATGCAGGTCTGTTCGGCGACACGACGCTGACGAAGGTCTTCGTTGGAGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGCGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTCACGTTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGACTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTGGCTTCGCTCGGCGCTCGCCGCGGCTCCCGCTCGGCTTCGGCTACTCCGCCGCAAGGTCCTCAACCAGGATCGAACGGCGGTGGGCCGAGAACGACGTCAGCAGGAGCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCGACGCCGTTTCACCATCAGCCTCATCAGGCCGTCCCTTTCTATGGATACTCCCCAAGCCCCACCTACATTGCAACCGATATCAGTTACAACCACAAACTGGGCTACATGAACGGGCATTACACGCAGATGTATCCGGGACAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATTCCCTCCCAGTCCCACGGCGGCGGGCCCTTTCGCGGCGGTCCCACCCACTTCCATTATGTCCAAACCGGCCTCCGTTGGTCCCAACCCAGGTACAGTTGGAGGAGGATGCAGAGGATGA MIAFGNCLSVSLSVSLSSSISLFPYHSVLHTLHSSSSSSYIILSSSSPPPFFFLTYQASSIPLSISSDGCFDSAGDTQRPESQSMTMMSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQGPQPGSNGGGPRTTSAGASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPNPGTVGGGCRG Homology
BLAST of Lcy13g008150 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 2.4e-59 Identity = 143/279 (51.25%), Postives = 167/279 (59.86%), Query Frame = 0
BLAST of Lcy13g008150 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 3.1e-22 Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0
BLAST of Lcy13g008150 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 5.3e-22 Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0
BLAST of Lcy13g008150 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 5.3e-22 Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0
BLAST of Lcy13g008150 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2) HSP 1 Score: 106.7 bits (265), Expect = 5.3e-22 Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0
BLAST of Lcy13g008150 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1) HSP 1 Score: 480.7 bits (1236), Expect = 5.0e-132 Identity = 239/251 (95.22%), Postives = 240/251 (95.62%), Query Frame = 0
BLAST of Lcy13g008150 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1) HSP 1 Score: 476.5 bits (1225), Expect = 9.4e-131 Identity = 241/262 (91.98%), Postives = 246/262 (93.89%), Query Frame = 0
BLAST of Lcy13g008150 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1) HSP 1 Score: 467.6 bits (1202), Expect = 4.4e-128 Identity = 236/258 (91.47%), Postives = 241/258 (93.41%), Query Frame = 0
BLAST of Lcy13g008150 vs. ExPASy TrEMBL
Match: A0A1S3BD62 (probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1) HSP 1 Score: 467.6 bits (1202), Expect = 4.4e-128 Identity = 236/257 (91.83%), Postives = 241/257 (93.77%), Query Frame = 0
BLAST of Lcy13g008150 vs. ExPASy TrEMBL
Match: A0A6J1FUE8 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446973 PE=4 SV=1) HSP 1 Score: 458.0 bits (1177), Expect = 3.5e-125 Identity = 231/254 (90.94%), Postives = 237/254 (93.31%), Query Frame = 0
BLAST of Lcy13g008150 vs. NCBI nr
Match: XP_038891949.1 (probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida]) HSP 1 Score: 498.4 bits (1282), Expect = 4.8e-137 Identity = 251/266 (94.36%), Postives = 253/266 (95.11%), Query Frame = 0
BLAST of Lcy13g008150 vs. NCBI nr
Match: XP_004143608.1 (probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus]) HSP 1 Score: 480.7 bits (1236), Expect = 1.0e-131 Identity = 239/251 (95.22%), Postives = 240/251 (95.62%), Query Frame = 0
BLAST of Lcy13g008150 vs. NCBI nr
Match: XP_038891950.1 (probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida]) HSP 1 Score: 480.3 bits (1235), Expect = 1.4e-131 Identity = 242/257 (94.16%), Postives = 244/257 (94.94%), Query Frame = 0
BLAST of Lcy13g008150 vs. NCBI nr
Match: XP_008445852.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo]) HSP 1 Score: 476.5 bits (1225), Expect = 2.0e-130 Identity = 241/262 (91.98%), Postives = 246/262 (93.89%), Query Frame = 0
BLAST of Lcy13g008150 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus]) HSP 1 Score: 471.5 bits (1212), Expect = 6.3e-129 Identity = 234/246 (95.12%), Postives = 235/246 (95.53%), Query Frame = 0
BLAST of Lcy13g008150 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 230.7 bits (587), Expect = 1.7e-60 Identity = 143/279 (51.25%), Postives = 167/279 (59.86%), Query Frame = 0
BLAST of Lcy13g008150 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 178.7 bits (452), Expect = 7.8e-45 Identity = 119/248 (47.98%), Postives = 138/248 (55.65%), Query Frame = 0
BLAST of Lcy13g008150 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 154.1 bits (388), Expect = 2.1e-37 Identity = 102/243 (41.98%), Postives = 132/243 (54.32%), Query Frame = 0
BLAST of Lcy13g008150 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 154.1 bits (388), Expect = 2.1e-37 Identity = 102/243 (41.98%), Postives = 132/243 (54.32%), Query Frame = 0
BLAST of Lcy13g008150 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 151.8 bits (382), Expect = 1.0e-36 Identity = 105/252 (41.67%), Postives = 135/252 (53.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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