Lcy13g004860 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g004860
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr13: 4191946 .. 4194550 (+)
RNA-Seq Expression	Lcy13g004860
Synteny	Lcy13g004860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACCGGGTGGCCGTCTCGGTGGCATTTCAGCGCGAATCCCGGGTACCCACAGAAGGATTCTTGGCGATTATGAATGTAAAATGGGTACTGAATTGTCTGGTTGTCGCCGCAGGACGCCGGGCGCCGGCAGGCCTCGAAGTGGAAGTCAACGTCGGCGGCGGCGGAGATGGTGGGCGTTTCCGGCGACAGAAAAATGAGAATGAAAATGAAGATGGAGAGATTGAACACCATCTGGGTTGGAAGATGAGATAAGATTTTGAGAGAAACAGAGAGAAAGGTGTTGTTTTGAGATTGAGTTTTAATTATTGGGTGTGAATTTGAAGAAGTTTTCGGGTGCTGAGTCTAAATTAAATGAATTTTCTGTATGTGTGCCTCATATATCATAGACCGTTGAATTGGATTTTATCTTCAAAGCCATATTCAAAGGTTTTGAGTTTGACACTTGACCTTGCATGTGTTTCAAATAGCAAGTTGGATCTAAAGTTTTTTTCTTGGCCCTTTTTGAAATTGGGTGTCTACGGGAGATCGTTTTCAATCAAGGGTAAAAGGGATTGGTTTCGATCCTTGAATTTACCATTTACTAATGAAATTGACCACCAAATTGATCCATTTTTATCTAGATTGACTCGGGTCCAGGTTGTAATTGTTGTACTTTGTAATATGAAATAAATTCATAGATGTCAAAGTGTTCAGCGGTAATTGACATGTACTCTTGACTAAAAGATCAGATGTTCGAAACTCCCCTCCCCAAATGTTGTTGAATTCAAAAAAAATAAACATATAAAATAAATTTAAATTTCTTGAACAATGAAATTGAAAATTGGTTAAAAACGAATCTCTAATTCCAGATGAATCTAATCTTAAAAGATAGTAGAGAAATAGATTATGTGAATGAACATGTTTTAAAAGTGAGATTTTAATAAATTCACAAAAAAAAAAAAAAGGAAAAATTTCTCTCACAATCATTTTTGCTCTATTAGAATCAATCTCAAACCTCAATTCTTTTGAATTTTCAATATGAATCTTTATTTTTAATGGGGGGAAAATGGGCAGCGTAAATATTTCAAGAAAAAAGGAACTTTCTCGTATTGTAGGTGTTTTTAAATTGCTTTGTGATGAGGGGGTTTAGGGTCCGTTTGGAATACATTTTAATTTAAATGTTTTTCAAGAATGCATTTTTTAAAAAACATTTTGTATAAAAATTATTTAGAATTTAAACACTCATATGTTTGGTTGCATTCCCTCACAAATGTTTTTATACACAAGTTATTGTTTACTTAAGAAGTCTTTCCTAAAAAGTTGACTAAGTGTTTCTCTCAAAATGGTTTATTTATCAATCTCATTTTCTAATAAGTCATTTTTAATGGTTGTCAAACACTAGAAATTTTTTGAAAATGATTTATTTTCAAAATTAAACACTTGAAAAGTTAAACCAAACATACCCTTAATTTCAAGGAATGATGAAAATATTTTAGGTAAATAAGAAGTTGAATTTATCTCTAAACTTTTTATTGACCAATGCTACTCTATTTTCCAAACCCATGTTAAAATTTGCATTGAAATTAAATTTTATATTAATGTGGCCCCTTGATATGACTTAACAATATAATCTATATATTTATGGTCTAAGTCAAGATTTAATTTTTCTTCGATCGTAGCGTAGCTAGAAAAATAAAAAAGAAAACAAAACGAAATGATTATAAGAAATTAGTGTGCAAAATAGTCTTGAAACTTTATATCAAAAACAGCCGTTTAAACTACAACTACCCACTTCTTATATTCAGTGGTCAGGTCACAAGGCGTGCCAGAACTCTTGCACCCACAACCAAACCAAAAAGGAACTTAGCTTGCCCAATTTGACCGATTATATTTATTTATTTATTTATTTTTATTATTATTATTTTGCAATCTTCTAAAAATTTAAATCTTCAAACCACATTACAAATATATACACACACATATAATTTTGCAAACTTGCTTTATTTTATCATATATGAAAAAAAACATATTATCAATTGGGTCGGTTAACTATTAAACAACAATAACACACAAGAACCTTCAACAGGGAGGTGTTGGCGGGATAATCTGTGACTCCGTAGGGTCCCTAGTTTGTGCGGTTATAGGAAAATCAGTAAAGAGTGGCCAATCAAAGCCCTAGAGGCCCTTGCAATTTTTAGAAGGGCTGAAAGCGTACCTGAAGCTGAAGGAAGTAGTTGAAGATCCTTCCACATTTCCTCCCATCTGGGTGGAGTCAGATGTCGCCAAAGCCATCAAATGCATTAATCAGGAGAGCGACGACATTACTGAATCTAGAATTTTCCTAGCTGAAGCAGTCGATCTTGGTCGTAAAGCAGGGGCAATGGTTGTCTCCTTCTGCCTGAGAGTTTGCAACTGGGTGGTGCACACCATTGCTCGATCTGCTGTCTCATCCCCTGCCATTGATTTTGTAGATCAATCGTCTCAAGCCACTATGGTGCAGTCTCCATCTTCTTCTCCCAAAGATGTCGTTTTCTGGAGGGATTTTGTTGTACCTAACTGGCTATCCTCTTCTACTATAAATGAGGATTTTTGTATACCTACCTTCGTTTCTTCTAATTAA

mRNA sequence

ATGGAGGACCGGGTGGCCGTCTCGGTGGCATTTCAGCGCGAATCCCGGGTACCCACAGAAGGATTCTTGGCGATTATGAATGTAAAATGGGTACTGAATTGTCTGGTTGTCGCCGCAGGACGCCGGGCGCCGGCAGGCCTCGAAGTGGAAGTCAACGTCGGCGGCGGCGGAGATGGTGGGCGTTTCCGGCGACAGAAAAATGAGAATGAAAATGAAGATGGAGAGATTGAACACCATCTGGAAGGGCTGAAAGCGTACCTGAAGCTGAAGGAAGTAGTTGAAGATCCTTCCACATTTCCTCCCATCTGGGTGGAGTCAGATGTCGCCAAAGCCATCAAATGCATTAATCAGGAGAGCGACGACATTACTGAATCTAGAATTTTCCTAGCTGAAGCAGTCGATCTTGGTCGTAAAGCAGGGGCAATGGTTGTCTCCTTCTGCCTGAGAGTTTGCAACTGGGTGGTGCACACCATTGCTCGATCTGCTGTCTCATCCCCTGCCATTGATTTTGTAGATCAATCGTCTCAAGCCACTATGGTGCAGTCTCCATCTTCTTCTCCCAAAGATGTCGTTTTCTGGAGGGATTTTGTTGTACCTAACTGGCTATCCTCTTCTACTATAAATGAGGATTTTTGTATACCTACCTTCGTTTCTTCTAATTAA

Coding sequence (CDS)

ATGGAGGACCGGGTGGCCGTCTCGGTGGCATTTCAGCGCGAATCCCGGGTACCCACAGAAGGATTCTTGGCGATTATGAATGTAAAATGGGTACTGAATTGTCTGGTTGTCGCCGCAGGACGCCGGGCGCCGGCAGGCCTCGAAGTGGAAGTCAACGTCGGCGGCGGCGGAGATGGTGGGCGTTTCCGGCGACAGAAAAATGAGAATGAAAATGAAGATGGAGAGATTGAACACCATCTGGAAGGGCTGAAAGCGTACCTGAAGCTGAAGGAAGTAGTTGAAGATCCTTCCACATTTCCTCCCATCTGGGTGGAGTCAGATGTCGCCAAAGCCATCAAATGCATTAATCAGGAGAGCGACGACATTACTGAATCTAGAATTTTCCTAGCTGAAGCAGTCGATCTTGGTCGTAAAGCAGGGGCAATGGTTGTCTCCTTCTGCCTGAGAGTTTGCAACTGGGTGGTGCACACCATTGCTCGATCTGCTGTCTCATCCCCTGCCATTGATTTTGTAGATCAATCGTCTCAAGCCACTATGGTGCAGTCTCCATCTTCTTCTCCCAAAGATGTCGTTTTCTGGAGGGATTTTGTTGTACCTAACTGGCTATCCTCTTCTACTATAAATGAGGATTTTTGTATACCTACCTTCGTTTCTTCTAATTAA

Protein sequence

MEDRVAVSVAFQRESRVPTEGFLAIMNVKWVLNCLVVAAGRRAPAGLEVEVNVGGGGDGGRFRRQKNENENEDGEIEHHLEGLKAYLKLKEVVEDPSTFPPIWVESDVAKAIKCINQESDDITESRIFLAEAVDLGRKAGAMVVSFCLRVCNWVVHTIARSAVSSPAIDFVDQSSQATMVQSPSSSPKDVVFWRDFVVPNWLSSSTINEDFCIPTFVSSN

Homology

The following BLAST results are available for this feature:

BLAST of Lcy13g004860 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g004860 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g004860 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g004860 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 98..162 e-value: 1.0E-4 score: 22.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g004860.1	Lcy13g004860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity