Lcy13g004710 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g004710
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	VQ motif-containing protein 8, chloroplastic
Location	Chr13: 4046623 .. 4047369 (+)
RNA-Seq Expression	Lcy13g004710
Synteny	Lcy13g004710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAACCACTTTTTTCCCCTCTTTAATCGCTTTACTTCAAATCAAAATCATAATCATGAGCCCAGCTAAATCCTGCGACCTCAATGGCCCTCGCCCGTCTCCTCTCCTAATTCACAAAGATTCTCGCTTGATTCGCAAGGCTCCTCAGCAGCCGCAGCTCCGGCAGCCCGTCATAATCTACACCCATTCCCCGAAAATCATCCACACGCAGCCCAAGGATTTCATGGCCCTCGTCCAACGCCTCACCGGCTTCACGCCCTCCGACGCCGCCCGGCCTCAACAAACGCTTCAGAAACCGCCCTCCGACTCCGACAGGAATCTCAATAACGACAATGATTCTTCCTCGGTTCTCACGGACGACGAGAATAATAACGACGGCCGTCGTCCTCACAGAGATTGTAATTCGTCGTTTTTGTCCGATGATGCTCCTCTGTTCACTCCTCGTTCTTCGCTTCTCAGATATTCTTCTTTCGATACGGCGCCGTTTTCGTCTCCTGGTTTGGTTAACTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGCCTCCCTGAATTTTAATCATCTCATGTGTTCTTCCACAACGTACGTACGTGTTTTGTTTTTCTGGGAATTAATGTTGTTGTTTGTTCTCTTGTTCATAGATTTTTAATTTGCCATGTTCTTTACATCATTTTTAGTGTTCGATTCTCCATTAGACAATGTATAATTTGTGAATTAGTTATGAGAATTCAATTCATTCTTTCGACC

mRNA sequence

TTAACCACTTTTTTCCCCTCTTTAATCGCTTTACTTCAAATCAAAATCATAATCATGAGCCCAGCTAAATCCTGCGACCTCAATGGCCCTCGCCCGTCTCCTCTCCTAATTCACAAAGATTCTCGCTTGATTCGCAAGGCTCCTCAGCAGCCGCAGCTCCGGCAGCCCGTCATAATCTACACCCATTCCCCGAAAATCATCCACACGCAGCCCAAGGATTTCATGGCCCTCGTCCAACGCCTCACCGGCTTCACGCCCTCCGACGCCGCCCGGCCTCAACAAACGCTTCAGAAACCGCCCTCCGACTCCGACAGGAATCTCAATAACGACAATGATTCTTCCTCGGTTCTCACGGACGACGAGAATAATAACGACGGCCGTCGTCCTCACAGAGATTGTAATTCGTCGTTTTTGTCCGATGATGCTCCTCTGTTCACTCCTCGTTCTTCGCTTCTCAGATATTCTTCTTTCGATACGGCGCCGTTTTCGTCTCCTGGTTTGGTTAACTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGCCTCCCTGAATTTTAATCATCTCATGTGTTCTTCCACAACGTACGTACGTGTTTTGTTTTTCTGGGAATTAATGTTGTTGTTTGTTCTCTTGTTCATAGATTTTTAATTTGCCATGTTCTTTACATCATTTTTAGTGTTCGATTCTCCATTAGACAATGTATAATTTGTGAATTAGTTATGAGAATTCAATTCATTCTTTCGACC

Coding sequence (CDS)

ATGAGCCCAGCTAAATCCTGCGACCTCAATGGCCCTCGCCCGTCTCCTCTCCTAATTCACAAAGATTCTCGCTTGATTCGCAAGGCTCCTCAGCAGCCGCAGCTCCGGCAGCCCGTCATAATCTACACCCATTCCCCGAAAATCATCCACACGCAGCCCAAGGATTTCATGGCCCTCGTCCAACGCCTCACCGGCTTCACGCCCTCCGACGCCGCCCGGCCTCAACAAACGCTTCAGAAACCGCCCTCCGACTCCGACAGGAATCTCAATAACGACAATGATTCTTCCTCGGTTCTCACGGACGACGAGAATAATAACGACGGCCGTCGTCCTCACAGAGATTGTAATTCGTCGTTTTTGTCCGATGATGCTCCTCTGTTCACTCCTCGTTCTTCGCTTCTCAGATATTCTTCTTTCGATACGGCGCCGTTTTCGTCTCCTGGTTTGGTTAACTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGCCTCCCTGAATTTTAA

Protein sequence

MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF

Homology

[Close]

BLAST of Lcy13g004710 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 58/164 (35.37%), Postives = 76/164 (46.34%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKA------PQQPQLRQPVIIYTHSPKIIHTQPK 60
           M P +  ++NG RPS L +  +S  I+K       P+      PVIIY HSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRP--- 120
           DFMALVQRLTG                  D     N    SSSV+T++ N  D       
Sbjct: 61  DFMALVQRLTGL-----------------DEIIRRNTSESSSSVVTEEVNVGDDNTAAPF 120

Query: 121 HRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSP 156
            +D        D PLFTP SS+  + S     + SP   +S  P
Sbjct: 121 SQDRTQRQKLTDMPLFTP-SSMTLFGSPTQLMYMSPNRTDSFRP 146

[Close]

BLAST of Lcy13g004710 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 6.7e-10
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 11 GPRPSPLLIHKDSRLIRKAPQQPQ------------LRQPVIIYTHSPKIIHTQPKDFMA 68
          GPRPSPL +HKDS  I+K P+ P              R+PV+IY  SPK++H    +FM 
Sbjct: 26 GPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEFMN 85

[Close]

BLAST of Lcy13g004710 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.7e-10
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 12  PRPSPLLIHKDSRLIRKAPQQPQL------RQPVIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P P  L ++KDS +I+K P           R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  FTPSD--------------AARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRP 125
            T SD                   +T+ +P  D   N N     ++ L +     +G+  
Sbjct: 101 MTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGI 160

[Close]

BLAST of Lcy13g004710 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-06
Identity = 40/111 (36.04%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 11  GPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIH 70
           GP+P+PL +  DS ++I+K         PQ PQ  Q           PV IYT +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTD 102
           T P +FM LVQRLTG          QT     S S  +  ++   +S + D
Sbjct: 73  THPNNFMTLVQRLTG----------QTSTSTTSSSSSSSTSEPKDTSTMVD 113

[Close]

BLAST of Lcy13g004710 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.8e-43
Identity = 112/175 (64.00%), Postives = 123/175 (70.29%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSPAKSCD+NGPRPSPLLIHK SRLIRK P  PQLRQP+IIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPP--PQLRQPLIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRR--------PH 120
           QRLTGFTP              SD + N+N DNDSSSVLT++ N  D             
Sbjct: 61  QRLTGFTPPPPPHADD------SDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQS 120

Query: 121 RDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 168
           +  + SFL+ D PLFTP    LRY+  D   F+SPGL NSLSPSFMEFLKGLPEF
Sbjct: 121 QSQSHSFLA-DVPLFTPAG--LRYAP-DATSFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of Lcy13g004710 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.4e-33
Identity = 92/167 (55.09%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KS  +NG RPSPLLIH DSRL+RK    PQLRQP+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRPHRDCNSSFL 120
           QRLTGF P            PP   +RN +NDNDS+S +T +E+ N+ +           
Sbjct: 61  QRLTGFNP------------PPPQPERN-SNDNDSTSGVTSEEDVNEKQ----------- 120

Query: 121 SDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 168
                      S+L+YSS  T PFSSP  ++SLSPSFM+FLK LPEF
Sbjct: 121 --------SNCSVLKYSSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of Lcy13g004710 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.4e-33
Identity = 92/167 (55.09%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KS  +NG RPSPLLIH DSRL+RK    PQLRQP+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRPHRDCNSSFL 120
           QRLTGF P            PP   +RN +NDNDS+S +T +E+ N+ +           
Sbjct: 61  QRLTGFNP------------PPPQPERN-SNDNDSTSGVTSEEDVNEKQ----------- 120

Query: 121 SDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 168
                      S+L+YSS  T PFSSP  ++SLSPSFM+FLK LPEF
Sbjct: 121 --------SNCSVLKYSSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of Lcy13g004710 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 97/169 (57.40%), Postives = 110/169 (65.09%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KS ++NGPRPSPLLIH  SRLIRK     QLRQP+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRK---PVQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRPHRDCNSSFL 120
           QRLTG  P     P       PS S+RNL NDNDSSS +T +E+ N+ +           
Sbjct: 61  QRLTGCNPPP---PLPLPSAKPSLSERNL-NDNDSSSGVTTEEDINEKQ----------- 120

Query: 121 SDDAPLFTPRSSLLRYSSFD-TAPFSSPG-LVNSLSPSFMEFLKGLPEF 168
                      S+L+YSS D T PFSSP  L +SLSPSFM+FLK LPEF
Sbjct: 121 --------SNCSVLKYSSHDVTTPFSSPAFLSSSLSPSFMDFLKALPEF 143

[Close]

BLAST of Lcy13g004710 vs. ExPASy TrEMBL
Match: A0A6P6V0F4 (VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=LOC113716215 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.0e-26
Identity = 87/193 (45.08%), Postives = 114/193 (59.07%), Query Frame = 0


Query: 9   LNGPRPSPLLIHKDSRLI----------RKAPQQ-------PQLRQPVIIYTHSPKIIHT 68
           +NGPRPSPL I+KDS +I          +KAP++        Q RQPVIIYTHSPKIIHT
Sbjct: 15  INGPRPSPLRINKDSHVIQKPSSMNQVYKKAPKEQNTRLSTQQPRQPVIIYTHSPKIIHT 74

Query: 69  QPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNL---NNDNDSSSVLTDDENNNDG 128
           +PKDFMALVQ+LTGF+ S+    +Q ++      D+ +     DNDSSSV +DD+   D 
Sbjct: 75  KPKDFMALVQKLTGFSRSE----EQIVEAESKRDDQTITISQEDNDSSSVTSDDKYEGDN 134

Query: 129 RRPHRDCNSSFLS----------DDAPLFTPRSSLLRYSS----FDTAPFSSPGLVNSLS 168
                  +SS +S           D PLFTP S+L         +    F+SP +V+SLS
Sbjct: 135 ASDVIKESSSAVSPVNKGLNPYLTDIPLFTPNSNLFSSPQPVFRYPDVVFTSPNIVSSLS 194

[Close]

BLAST of Lcy13g004710 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 184.9 bits (468), Expect = 5.7e-43
Identity = 112/175 (64.00%), Postives = 123/175 (70.29%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSPAKSCD+NGPRPSPLLIHK SRLIRK P  PQLRQP+IIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPP--PQLRQPLIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRR--------PH 120
           QRLTGFTP              SD + N+N DNDSSSVLT++ N  D             
Sbjct: 61  QRLTGFTPPPPPHADD------SDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQS 120

Query: 121 RDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 168
           +  + SFL+ D PLFTP    LRY+  D   F+SPGL NSLSPSFMEFLKGLPEF
Sbjct: 121 QSQSHSFLA-DVPLFTPAG--LRYAP-DATSFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of Lcy13g004710 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-41
Identity = 109/167 (65.27%), Postives = 116/167 (69.46%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KSC++NGPRPSPLLIHKDSR IRK    PQLRQPVIIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPPKSCEINGPRPSPLLIHKDSRFIRK----PQLRQPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRPHRDCNSSFL 120
           QRLTGF P     P   L    S S+RN  NDNDSSS LT +E  N+      D   S +
Sbjct: 61  QRLTGFNPPPPPPPSNALSL--SFSERNF-NDNDSSSGLTTEEEINE----CGDQKQSVV 120

Query: 121 SDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 168
                     SSLLRYSS  T PFSSP L+NSLSPSFMEFLK LPEF
Sbjct: 121 LKQLVQRQSNSSLLRYSSDVTTPFSSPALINSLSPSFMEFLKALPEF 156

[Close]

BLAST of Lcy13g004710 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 7.0e-33
Identity = 92/167 (55.09%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KS  +NG RPSPLLIH DSRL+RK    PQLRQP+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRPHRDCNSSFL 120
           QRLTGF P            PP   +RN +NDNDS+S +T +E+ N+ +           
Sbjct: 61  QRLTGFNP------------PPPQPERN-SNDNDSTSGVTSEEDVNEKQ----------- 120

Query: 121 SDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 168
                      S+L+YSS  T PFSSP  ++SLSPSFM+FLK LPEF
Sbjct: 121 --------SNCSVLKYSSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of Lcy13g004710 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 8.6e-31
Identity = 90/167 (53.89%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP K   ++GPRP PLL+HK SR IRK    PQLR+PVIIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRPHRDCNSSFL 120
           QRLTG +P +A        K PSD       +NDSSSV+T++++N               
Sbjct: 61  QRLTGCSPPNA-------DKAPSD-------NNDSSSVVTEEDSN--------------- 118

Query: 121 SDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 168
               PLFTPRS                 LVNSLSPSFMEFLKGLPEF
Sbjct: 121 ---CPLFTPRS-----------------LVNSLSPSFMEFLKGLPEF 118

[Close]

BLAST of Lcy13g004710 vs. NCBI nr
Match: XP_027096313.1 (VQ motif-containing protein 8, chloroplastic-like [Coffea arabica])

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-25
Identity = 87/193 (45.08%), Postives = 114/193 (59.07%), Query Frame = 0


Query: 9   LNGPRPSPLLIHKDSRLI----------RKAPQQ-------PQLRQPVIIYTHSPKIIHT 68
           +NGPRPSPL I+KDS +I          +KAP++        Q RQPVIIYTHSPKIIHT
Sbjct: 15  INGPRPSPLRINKDSHVIQKPSSMNQVYKKAPKEQNTRLSTQQPRQPVIIYTHSPKIIHT 74

Query: 69  QPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNL---NNDNDSSSVLTDDENNNDG 128
           +PKDFMALVQ+LTGF+ S+    +Q ++      D+ +     DNDSSSV +DD+   D 
Sbjct: 75  KPKDFMALVQKLTGFSRSE----EQIVEAESKRDDQTITISQEDNDSSSVTSDDKYEGDN 134

Query: 129 RRPHRDCNSSFLS----------DDAPLFTPRSSLLRYSS----FDTAPFSSPGLVNSLS 168
                  +SS +S           D PLFTP S+L         +    F+SP +V+SLS
Sbjct: 135 ASDVIKESSSAVSPVNKGLNPYLTDIPLFTPNSNLFSSPQPVFRYPDVVFTSPNIVSSLS 194

[Close]

BLAST of Lcy13g004710 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-12
Identity = 58/164 (35.37%), Postives = 76/164 (46.34%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKA------PQQPQLRQPVIIYTHSPKIIHTQPK 60
           M P +  ++NG RPS L +  +S  I+K       P+      PVIIY HSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRP--- 120
           DFMALVQRLTG                  D     N    SSSV+T++ N  D       
Sbjct: 61  DFMALVQRLTGL-----------------DEIIRRNTSESSSSVVTEEVNVGDDNTAAPF 120

Query: 121 HRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSP 156
            +D        D PLFTP SS+  + S     + SP   +S  P
Sbjct: 121 SQDRTQRQKLTDMPLFTP-SSMTLFGSPTQLMYMSPNRTDSFRP 146

[Close]

BLAST of Lcy13g004710 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-11
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 11 GPRPSPLLIHKDSRLIRKAPQQPQ------------LRQPVIIYTHSPKIIHTQPKDFMA 68
          GPRPSPL +HKDS  I+K P+ P              R+PV+IY  SPK++H    +FM 
Sbjct: 26 GPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEFMN 85

[Close]

BLAST of Lcy13g004710 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-11
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 12  PRPSPLLIHKDSRLIRKAPQQPQL------RQPVIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P P  L ++KDS +I+K P           R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  FTPSD--------------AARPQQTLQKPPSDSDRNLNNDNDSSSVLTDDENNNDGRRP 125
            T SD                   +T+ +P  D   N N     ++ L +     +G+  
Sbjct: 101 MTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGI 160

[Close]

BLAST of Lcy13g004710 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-10
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 5  KSCDLNGPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTH 64
          +S  + GPRP PL +  DS ++I+K         PQ PQ  Q           PVIIYT 
Sbjct: 7  RSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTV 66

Query: 65 SPKIIHTQPKDFMALVQRLTGFT 68
          SP+IIHT P +FM LVQRLTG T
Sbjct: 67 SPRIIHTHPNNFMTLVQRLTGKT 89

[Close]

BLAST of Lcy13g004710 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 52.0 bits (123), Expect = 5.4e-07
Identity = 40/111 (36.04%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 11  GPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIH 70
           GP+P+PL +  DS ++I+K         PQ PQ  Q           PV IYT +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNNDNDSSSVLTD 102
           T P +FM LVQRLTG          QT     S S  +  ++   +S + D
Sbjct: 73  THPNNFMTLVQRLTG----------QTSTSTTSSSSSSSTSEPKDTSTMVD 113

The following BLAST results are available for this feature:

BLAST of Lcy13g004710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA36	2.1e-11	35.37	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8LGD5	6.7e-10	46.38	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
Q9LS54	6.7e-10	35.34	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
F4HWF9	7.6e-06	36.04	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of Lcy13g004710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DC48	2.8e-43	64.00	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5D3CFH5	3.4e-33	55.09	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	3.4e-33	55.09	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KT78	1.4e-31	57.40	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A6P6V0F4	9.0e-26	45.08	VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=...	[more]

BLAST of Lcy13g004710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150646.1	5.7e-43	64.00	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
XP_038893302.1	3.2e-41	65.27	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
XP_008466850.1	7.0e-33	55.09	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]
KAG7013019.1	8.6e-31	53.89	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_027096313.1	1.9e-25	45.08	VQ motif-containing protein 8, chloroplastic-like [Coffea arabica]	[more]

BLAST of Lcy13g004710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68450.1	1.5e-12	35.37	VQ motif-containing protein	[more]
AT3G18690.1	4.7e-11	46.38	MAP kinase substrate 1	[more]
AT3G18360.1	4.7e-11	35.34	VQ motif-containing protein	[more]
AT1G21326.1	6.8e-10	46.99	VQ motif-containing protein	[more]
AT1G21320.1	5.4e-07	36.04	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..67 e-value: 4.9E-11 score: 41.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..102
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 9..167
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 9..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g004710.1	Lcy13g004710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding