Lcy13g004340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g004340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP-dependent Clp protease adapter protein CLPS1
Location	Chr13: 3767126 .. 3770060 (+)
RNA-Seq Expression	Lcy13g004340
Synteny	Lcy13g004340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGACCTCCGCTTTTCCCCAGTCCCCTTTCTGAAAACGAATCAGTCCACTACCATTTTCAATTTTCATTTCTCCTTCTTCAATTTTGAAATCTTTAGAACAATCAGAACAAATATTTCCCATCGGAACCGATTTTCCGTTTCAGATAGACACGAAGAGAAGCCATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAACCATGTCTTCAACCCCAAACCAGGTACTGGTTTTATTCACTCTTTTTCTTCATTATCAATCGTTTAATCGTCTTCGGTTTTACTGATTTTGATCCGCCATTACTGATTCCTTGAGAAATCCCACGTACATCATCCTTATTATCTATCTTATTTTCCGGGTGGGGTTGACTTCAATTATGGGTTTTAATGTTTTAATCCCAACTAAGCTTGATATCTGAACAAGTTTATTAGCTTTTACTATGATATTTGATGATCTCAATTGACCGCTGAAGTTGTTATGCTTGTGCCATGCTGCCATGCTTATCTGTTTGCGTTGGCTAATTGGAATAATTTGATGGAGAGGGACCAGCAATTGTAAGGAATGTACCTTAAGACCAAAAAGTGCAACGTTTTTGGTAGAAAAAGATTTTCCCTGTGTATGCAGATATCTTTAATGGATTATATCCCATTGTTCCAGAATCTTCTGTTCTGTGGTGTCTTCCTTATGCTAGATTTATAAAAGAATCGATCACCTTTTTTGATCCTAGTGTGGTCTATAAGCTGCCTAGCATATGGTATCCCACTTCAATTTCTCATGTTATGCCTATTCTTCTATCATTCTTTTTCTTTGTACTTTGCTTTATATGCTTTTGTTTTTTGGTTCCATATTCTCTTTTGCTTATGGCTTAGTTGTCAATCACGTTGGAAGCTCCATTGTTTCTTGCTATGAATTGATTTACTTTCTATTCTTTTTAAGATTAAGATTACTTTTATTACTTTATTGATTCCATTGCTTTATTTGTTTTGTTATATTTATATGATTTGATTCTTCTCATTTTTCAACTTTAGCTTATTTTTCAAAGGTGCAGCATTATGACTGGATTAGCAATGGATAATATTAGCTTCTTATAAAAGTTTCATTTCAGGGGACAGAAATTCTGTGTGTAAAGGGCTATGCTCAAACTTTGGTGCATCGGTTGTTAAATCAGCAATAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCTACTCCAGGAAGAGAATCTGAGTTTGATTTGAGGTATTAAACATTAGACCGTACAGTTATGTATTGAAAAGAGTACAATATACTGAACTAGAAAAGGGGACAAAGAAAGAATAAAGTATACCAGTTAAAGACCTTAAAGAGATGGACAGATTCTGGTGTAGGGTCATCCGAAGACCAACGGTTAGATAGTTTTTCACTAATCTTTACAATTTGAATTCTAAATCAGGACTACTACTCTTGCACAATGCGTCTCTTTATTTTTCATTTGTTTGATTTTTGCTATTAACTTTACATGTATGTATCGCTTGGTGTCACCAATGTAATACCTTAGATGATTTTAGAGACAGGGTAATCTTATCAGCTACATATGCCATGTTGAACTATGCATTGGAACACACAAAAATCAAAGCATCTTTATTTATATGAAACTTGGCATTCCTTTTTGGAGTTGGTCTTTGTTCTTGTACCTTTACCAACTGTCATTGACTAAATACATTGATTTTTGTATTGGGAATACTAAATGATCGGCATTAAAAGGATTGTAGTTGAAGTAAAGTGGGAAAAGGAAATGGTATGAGCCTGCTTGCAACCGATGGAAAATCACTGATTTTTTCTTTCTTGACTGTACAGATAAAACCAATAGCTAAGGCCCCGTTTGATAACCATTTTGTTTTTGGTTTTTGGCTTTTGAAAATTGTGCTTGTTTTCTCTCAATCTTCATACAATGGTTTTCATATTTGTTAAGGAAACATTTGAGTTCCTAGCCAAATTCCAAAAACAAAAACAAGTTTTTGAAAACTACTTTTTTTTTGTTTTCAAAATTTGGCTTGGTTTTTGAAAACATGGGAAAGGAGGTAGATAAAAAACAAAGAAGCTTGTGGGTAAAAATAGTATTTATAGGCTTAATTTTCAAAAACCAAAAACGAAAAACGAAATGGTTATCAAACGGGGCCTAAGTTCTTGCGACTTAGGCAGACTTTAGGTTATTAGCAGATGTTGAAGTTAGATTTGAAAATTTGATTGTACAACTTGATTCTGAGTGAATGGGCACTGACTTTATTGTTCTCAGTTGGATAGTTCTTTTTCATAGAACAAAAGAGCAGATATGAACTGATCATTATGTATCAATGATATTGTTCAGGAGATCAAGGAAACTGACGCCCCCATATCGTGTCATTCTGCATAATGACGACTTCAATAAACGAGAATACGTCGTTCAAGTCCTGATGAAAGTCATCCCCGGAATGACGCTTGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGGTGCTGTTAAGCCTTTTCATCATTAGATTATAGATTATACATTTATGTGTATTCAAGCTGATCTTCATACCTTAAGGCATGGAGATGGATTGAGATTAAAAGGAGAAAAAAAGAAAAAGGAAACTGGTGTCTGGTATGTAAGTATTGGAGAACTCTTATGATATCTTGTATGTTTTGTGAGTAGAAGAACTTTTTTTTTATTATTATTATTTACTTTGATTATTTTAATTGTGTTTCTTTTAACCCCAAAAAAGGAAAAAAAAAAATGTTTACGAGAATTGTATAGGAAAAACTATCCACATAGATTGATG

mRNA sequence

CTAGACCTCCGCTTTTCCCCAGTCCCCTTTCTGAAAACGAATCAGTCCACTACCATTTTCAATTTTCATTTCTCCTTCTTCAATTTTGAAATCTTTAGAACAATCAGAACAAATATTTCCCATCGGAACCGATTTTCCGTTTCAGATAGACACGAAGAGAAGCCATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAACCATGTCTTCAACCCCAAACCAGGGGACAGAAATTCTGTGTGTAAAGGGCTATGCTCAAACTTTGGTGCATCGGTTGTTAAATCAGCAATAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCTACTCCAGGAAGAGAATCTGAGTTTGATTTGAGGAGATCAAGGAAACTGACGCCCCCATATCGTGTCATTCTGCATAATGACGACTTCAATAAACGAGAATACGTCGTTCAAGTCCTGATGAAAGTCATCCCCGGAATGACGCTTGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGGTGCTGTTAAGCCTTTTCATCATTAGATTATAGATTATACATTTATGTGTATTCAAGCTGATCTTCATACCTTAAGGCATGGAGATGGATTGAGATTAAAAGGAGAAAAAAAGAAAAAGGAAACTGGTGTCTGGTATGTAAGTATTGGAGAACTCTTATGATATCTTGTATGTTTTGTGAGTAGAAGAACTTTTTTTTTATTATTATTATTTACTTTGATTATTTTAATTGTGTTTCTTTTAACCCCAAAAAAGGAAAAAAAAAAATGTTTACGAGAATTGTATAGGAAAAACTATCCACATAGATTGATG

Coding sequence (CDS)

ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCACCCAACCATGTCTTCAACCCCAAACCAGGGGACAGAAATTCTGTGTGTAAAGGGCTATGCTCAAACTTTGGTGCATCGGTTGTTAAATCAGCAATAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCTACTCCAGGAAGAGAATCTGAGTTTGATTTGAGGAGATCAAGGAAACTGACGCCCCCATATCGTGTCATTCTGCATAATGACGACTTCAATAAACGAGAATACGTCGTTCAAGTCCTGATGAAAGTCATCCCCGGAATGACGCTTGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGGCTGTTAAGTTCAATTGAACCTGCTAGTGGTGGGTGCTGTTAA

Protein sequence

MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGRGGGLLERPVIEKATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

Homology

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BLAST of Lcy13g004340 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 114/159 (71.70%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITA-GRGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GD++ V KG C N    +  S   A G+GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRESEFDLR+S+K+ PPYRVILHND+FNKREYVVQVLMKVIPGMT+DNAVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC 159
           H NGL++VI+CAQADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Lcy13g004340 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-23
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 29  KGLCSNFGASVVKSAITAGRGGGLLERPVIEKATPGRESEFDLRRSRKLTPPYRVILHND 88
           +G    F     ++ +     GG+++ P     T  ++    + RS+K  P Y+V+LHND
Sbjct: 40  QGAFGTFAPQTTRTFVVTWAKGGVMDAP-----TTTQQPASGVERSQKRPPIYKVLLHND 99

Query: 89  DFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLL 148
           ++NKREYVV+VL+KV+  +T+D+AV  MQEAH  G++LV+ C Q +AE +C  LR NGL 
Sbjct: 100 NYNKREYVVKVLLKVVEQITVDDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLT 159

Query: 149 SSIEPASGGC 159
           S+IEP  GGC
Sbjct: 160 STIEP--GGC 162

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BLAST of Lcy13g004340 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-19
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 75  RKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQAD 134
           RK+ P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEEHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of Lcy13g004340 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.1e-17
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 75  RKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQAD 134
           RK+ P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEEHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

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BLAST of Lcy13g004340 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-14
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 62  TPGRESEFDL--RRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 121
           +PG  +  D    R RK +P Y+V+LHND  N  EYV+  L +V+P ++  +A+ +M EA
Sbjct: 9   SPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEA 68

Query: 122 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEP 154
           H  G+ LVI+C    AE +C  L+  GL SSIEP
Sbjct: 69  HNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

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BLAST of Lcy13g004340 vs. ExPASy TrEMBL
Match: A0A5A7STJ9 (ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00780 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 5.8e-83
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGRGGGLLERPVIEK 60
           MEIAICGKLA+SPNHVFNPKPGDR+S+CKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFD+RRSRK+TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Lcy13g004340 vs. ExPASy TrEMBL
Match: A0A1S3BG61 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489260 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 5.8e-83
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGRGGGLLERPVIEK 60
           MEIAICGKLA+SPNHVFNPKPGDR+S+CKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFD+RRSRK+TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Lcy13g004340 vs. ExPASy TrEMBL
Match: A0A0A0KWD9 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGRGGGLLERPVIEK 60
           MEIAI GKLALSPNHVFNPKPGDR+SVCKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAIRGKLALSPNHVFNPKPGDRSSVCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLRRSRK+TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAE HCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEGHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Lcy13g004340 vs. ExPASy TrEMBL
Match: A0A6J1DBL1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018609 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.5e-81
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGRGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNP+PGD+N VC+GLCS+ GA++VKSA TAG+GGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLRRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Lcy13g004340 vs. ExPASy TrEMBL
Match: A0A6J1HZX0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467734 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.1e-79
Identity = 151/160 (94.38%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGR-GGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGDR+SVCKGLCS   ASVVKSA TAGR GGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRK TPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           H NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of Lcy13g004340 vs. NCBI nr
Match: XP_008446565.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Cucumis melo] >KAA0034534.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa] >TYK09088.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa])

HSP 1 Score: 316.6 bits (810), Expect = 1.2e-82
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGRGGGLLERPVIEK 60
           MEIAICGKLA+SPNHVFNPKPGDR+S+CKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFD+RRSRK+TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Lcy13g004340 vs. NCBI nr
Match: XP_038891525.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 316.6 bits (810), Expect = 1.2e-82
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGRGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNPKPGDR+SVCKGLCSNFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLR+SRK+TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRKSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
            NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 CNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Lcy13g004340 vs. NCBI nr
Match: XP_011655763.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGRGGGLLERPVIEK 60
           MEIAI GKLALSPNHVFNPKPGDR+SVCKGLC NFGASVVKSA TAGRGGGLLERPVIEK
Sbjct: 1   MEIAIRGKLALSPNHVFNPKPGDRSSVCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLRRSRK+TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAE HCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEGHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Lcy13g004340 vs. NCBI nr
Match: XP_022150471.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica charantia])

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGRGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNP+PGD+N VC+GLCS+ GA++VKSA TAG+GGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRESEFDLRRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Lcy13g004340 vs. NCBI nr
Match: XP_022968529.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78
Identity = 151/160 (94.38%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITAGR-GGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGDR+SVCKGLCS   ASVVKSA TAGR GGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRK TPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           H NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of Lcy13g004340 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 240.7 bits (613), Expect = 7.8e-64
Identity = 114/159 (71.70%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITA-GRGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GD++ V KG C N    +  S   A G+GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRESEFDLR+S+K+ PPYRVILHND+FNKREYVVQVLMKVIPGMT+DNAVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC 159
           H NGL++VI+CAQADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Lcy13g004340 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-43
Identity = 89/159 (55.97%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRNSVCKGLCSNFGASVVKSAITA-GRGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GD++ V KG C N    +  S   A G+GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKLTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRESEFDLR+S+K+ PPYRVILHND+FNKREYVVQVLMK                 
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK----------------- 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC 159
                        ADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 121 -------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of Lcy13g004340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	1.1e-62	71.70	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	6.5e-23	43.08	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	2.0e-19	59.49	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	9.1e-17	57.53	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	3.3e-14	43.62	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Lcy13g004340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STJ9	5.8e-83	95.60	ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BG61	5.8e-83	95.60	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A0A0KWD9	1.1e-81	96.23	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 S...	[more]
A0A6J1DBL1	5.5e-81	93.08	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica cha...	[more]
A0A6J1HZX0	5.1e-79	94.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]

BLAST of Lcy13g004340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446565.1	1.2e-82	95.60	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_038891525.1	1.2e-82	96.86	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
XP_011655763.1	2.3e-81	96.23	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
XP_022150471.1	1.1e-80	93.08	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica chara...	[more]
XP_022968529.1	1.1e-78	94.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of Lcy13g004340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	7.8e-64	71.70	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	2.0e-43	55.97	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 76..153 e-value: 2.4E-21 score: 77.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 75..153
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 78..144 e-value: 1.5E-18 score: 66.3
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 61..155 score: 14.976843
None	No IPR available	PANTHER	PTHR33473:SF15	BNAA07G24510D PROTEIN	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g004340.1	Lcy13g004340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008233	peptidase activity