Lcy13g001990 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g001990
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transcription factor PAR1-like
Location	Chr13: 1804696 .. 1804965 (-)
RNA-Seq Expression	Lcy13g001990
Synteny	Lcy13g001990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATTGTTGTGTTTCGTCGACCGAGAGCAAAGGGATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGCCGGCACGGCGGCGGTGGCTCTGTGCAGATGAAGATGAGAAAGCTGCAGCGGCTGATCCCCGGCGGGCGGGGGCTGAAGCCGGACCGCCTCTTCTTAAAAACCGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCACTTTCCAAGATTTACGACCCTCTACTTTCTAAATATTGA

mRNA sequence

ATGGAATATTGTTGTGTTTCGTCGACCGAGAGCAAAGGGATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGCCGGCACGGCGGCGGTGGCTCTGTGCAGATGAAGATGAGAAAGCTGCAGCGGCTGATCCCCGGCGGGCGGGGGCTGAAGCCGGACCGCCTCTTCTTAAAAACCGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCACTTTCCAAGATTTACGACCCTCTACTTTCTAAATATTGA

Coding sequence (CDS)

ATGGAATATTGTTGTGTTTCGTCGACCGAGAGCAAAGGGATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGCCGGCACGGCGGCGGTGGCTCTGTGCAGATGAAGATGAGAAAGCTGCAGCGGCTGATCCCCGGCGGGCGGGGGCTGAAGCCGGACCGCCTCTTCTTAAAAACCGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCACTTTCCAAGATTTACGACCCTCTACTTTCTAAATATTGA

Protein sequence

MEYCCVSSTESKGIGKVKWQRRGRRGGRHGGGGSVQMKMRKLQRLIPGGRGLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPLLSKY

Homology

[Close]

BLAST of Lcy13g001990 vs. ExPASy TrEMBL
Match: A0A6J1DDZ5 (transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MEYCCVSSTESK--GIGKVKWQRRGRRGGRHGGGGSVQMKMRKLQRLIPGGRGLKPDRLF 60
          MEY CVSST++K  GIGKVKWQRRGRRGGRH GGGSVQMKMRKLQRLIPGGRGLKPDRLF
Sbjct: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRH-GGGSVQMKMRKLQRLIPGGRGLKPDRLF 60

Query: 61 LKTADYIMQLRSQVHVLQALSKIYDP-LLSKY 90
          LKTADYIMQLRSQV+VLQALSKIY+P L+SKY
Sbjct: 61 LKTADYIMQLRSQVNVLQALSKIYEPTLISKY 91

[Close]

BLAST of Lcy13g001990 vs. ExPASy TrEMBL
Match: A0A0A0KQB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.8e-31
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 10 ESKGIGKVKWQRRGRRGGRH--GGGGSVQMKMRKLQRLIPGGRGLKPDRLFLKTADYIMQ 69
          ESKGIGKV+WQRRGRRGGRH  GGGGSV MKMRKLQRLIPGGR LKPDRLFLKTADYIMQ
Sbjct: 9  ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 68

Query: 70 LRSQVHVLQALSKIYDPLLSKY 90
          LRSQVHVLQALSKIYDP LS Y
Sbjct: 69 LRSQVHVLQALSKIYDPTLSNY 90

[Close]

BLAST of Lcy13g001990 vs. ExPASy TrEMBL
Match: A0A6J1IR24 (uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.2e-30
Identity = 74/89 (83.15%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MEYCCVSSTESKGIGKVKWQRRGRRGGRHGGGGSVQMKMRKLQRLIPGGRGLKPDRLFLK 60
          MEY   +  E+KGI KVKWQRRGRRGG HGG  SV MKMRKLQRLIPGGR LKPDRLFLK
Sbjct: 1  MEY--YNCDEAKGIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLFLK 60

Query: 61 TADYIMQLRSQVHVLQALSKIYDPLLSKY 90
          TADYIMQLRSQVHVLQALSKIYDP LS+Y
Sbjct: 61 TADYIMQLRSQVHVLQALSKIYDPRLSQY 87

[Close]

BLAST of Lcy13g001990 vs. ExPASy TrEMBL
Match: A0A1S3BFE3 (uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.3e-30
Identity = 74/85 (87.06%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 7  SSTESKGIGKVKWQRRGRRGGRH----GGGGSVQMKMRKLQRLIPGGRGLKPDRLFLKTA 66
          S  ES GIGKV+WQRRGRRGGRH    GGGGSV MKMRKLQRLIPGGR LKPDRLFLKTA
Sbjct: 6  SICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTA 65

Query: 67 DYIMQLRSQVHVLQALSKIYDPLLS 88
          DYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 66 DYIMQLRSQVHVLQALSKIYDPTLS 90

[Close]

BLAST of Lcy13g001990 vs. ExPASy TrEMBL
Match: A0A6J1GYH6 (transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MEYCCVSSTESKGIGKVKWQRRGRRGGRHGGGGSVQMKMRKLQRLIPGGRGLKPDRLFLK 60
          MEY   +  E++GI KVKWQRRGRRGGRH GG SV MK+RKLQR+IPGGR LKPDRLFLK
Sbjct: 1  MEY--YNCDETRGIAKVKWQRRGRRGGRH-GGASVHMKLRKLQRIIPGGRRLKPDRLFLK 60

Query: 61 TADYIMQLRSQVHVLQALSKIYDPLLSKY 90
          TADYIMQLRSQVHVL ALSKIYDP LS+Y
Sbjct: 61 TADYIMQLRSQVHVLNALSKIYDPQLSRY 86

[Close]

BLAST of Lcy13g001990 vs. NCBI nr
Match: XP_022151226.1 (transcription factor PAR2 [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 2.2e-33
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MEYCCVSSTESK--GIGKVKWQRRGRRGGRHGGGGSVQMKMRKLQRLIPGGRGLKPDRLF 60
          MEY CVSST++K  GIGKVKWQRRGRRGGRH GGGSVQMKMRKLQRLIPGGRGLKPDRLF
Sbjct: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRH-GGGSVQMKMRKLQRLIPGGRGLKPDRLF 60

Query: 61 LKTADYIMQLRSQVHVLQALSKIYDP-LLSKY 90
          LKTADYIMQLRSQV+VLQALSKIY+P L+SKY
Sbjct: 61 LKTADYIMQLRSQVNVLQALSKIYEPTLISKY 91

[Close]

BLAST of Lcy13g001990 vs. NCBI nr
Match: XP_038891463.1 (transcription factor PAR2 [Benincasa hispida])

HSP 1 Score: 144.1 bits (362), Expect = 6.0e-31
Identity = 78/89 (87.64%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MEYCCVSSTESKGIGKVKWQRRGRRGGRHGGGGSVQMKMRKLQRLIPGGRGLKPDRLFLK 60
          MEY   +S ESKGIG VKWQRRGRRGGRH  G SVQMKMRKLQRLIPGGR LKPDRLFLK
Sbjct: 1  MEY--YNSCESKGIGNVKWQRRGRRGGRH--GASVQMKMRKLQRLIPGGRRLKPDRLFLK 60

Query: 61 TADYIMQLRSQVHVLQALSKIYDPLLSKY 90
          TADYIMQLRSQVHVLQALSKIYDP LSKY
Sbjct: 61 TADYIMQLRSQVHVLQALSKIYDPRLSKY 85

[Close]

BLAST of Lcy13g001990 vs. NCBI nr
Match: XP_011655641.1 (uncharacterized protein LOC105435564 [Cucumis sativus] >KGN51823.1 hypothetical protein Csa_009022 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 7.8e-31
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 10 ESKGIGKVKWQRRGRRGGRH--GGGGSVQMKMRKLQRLIPGGRGLKPDRLFLKTADYIMQ 69
          ESKGIGKV+WQRRGRRGGRH  GGGGSV MKMRKLQRLIPGGR LKPDRLFLKTADYIMQ
Sbjct: 9  ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 68

Query: 70 LRSQVHVLQALSKIYDPLLSKY 90
          LRSQVHVLQALSKIYDP LS Y
Sbjct: 69 LRSQVHVLQALSKIYDPTLSNY 90

[Close]

BLAST of Lcy13g001990 vs. NCBI nr
Match: XP_022977324.1 (uncharacterized protein LOC111477674 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 6.6e-30
Identity = 74/89 (83.15%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MEYCCVSSTESKGIGKVKWQRRGRRGGRHGGGGSVQMKMRKLQRLIPGGRGLKPDRLFLK 60
          MEY   +  E+KGI KVKWQRRGRRGG HGG  SV MKMRKLQRLIPGGR LKPDRLFLK
Sbjct: 1  MEY--YNCDEAKGIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLFLK 60

Query: 61 TADYIMQLRSQVHVLQALSKIYDPLLSKY 90
          TADYIMQLRSQVHVLQALSKIYDP LS+Y
Sbjct: 61 TADYIMQLRSQVHVLQALSKIYDPRLSQY 87

[Close]

BLAST of Lcy13g001990 vs. NCBI nr
Match: XP_008446236.1 (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 1.9e-29
Identity = 74/85 (87.06%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 7  SSTESKGIGKVKWQRRGRRGGRH----GGGGSVQMKMRKLQRLIPGGRGLKPDRLFLKTA 66
          S  ES GIGKV+WQRRGRRGGRH    GGGGSV MKMRKLQRLIPGGR LKPDRLFLKTA
Sbjct: 6  SICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTA 65

Query: 67 DYIMQLRSQVHVLQALSKIYDPLLS 88
          DYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 66 DYIMQLRSQVHVLQALSKIYDPTLS 90

[Close]

BLAST of Lcy13g001990 vs. TAIR 10
Match: AT1G23965.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70270.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-10
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 24  RRGGRHGGGGSVQMKMRKLQRLIPGGRGL-KPDRLFLKTADYIMQLRSQVHVLQALSKIY 83
           ++ GR  G GS+Q+KMRKL+ LIPGGR L +PD L  KTADYIM L  ++  L+A+S IY
Sbjct: 55  KKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHLELRIRFLKAISDIY 114

[Close]

BLAST of Lcy13g001990 vs. TAIR 10
Match: AT1G70270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23965.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 29 HGGG---GSVQMKMRKLQRLIPGGRGLK-PDRLFLKTADYIMQLRSQVHVLQALSKIY 83
          HG G   G +QMK+R+LQ LIPGG+    PD L  KT DYI+ L+ ++  L+A+S++Y
Sbjct: 27 HGSGSRSGLLQMKVRRLQILIPGGQTCNHPDLLLSKTVDYIVHLKLKLRFLKAISEMY 84

[Close]

BLAST of Lcy13g001990 vs. TAIR 10
Match: AT2G42870.1 (phy rapidly regulated 1 )

HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 35  VQMKMRKLQRLIPGGRGLKPDRLFLKTADYIMQLRSQVHVLQALS 80
           V+ K+  LQR+IPGG  L  D LF +TA YI+ L+ Q+  ++ L+
Sbjct: 59  VKEKIEALQRIIPGGAALGVDALFEETAGYILSLQCQIKTIKVLT 103

The following BLAST results are available for this feature:

BLAST of Lcy13g001990 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g001990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDZ5	1.1e-33	89.13	transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV...	[more]
A0A0A0KQB4	3.8e-31	91.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1	[more]
A0A6J1IR24	3.2e-30	83.15	uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674...	[more]
A0A1S3BFE3	9.3e-30	87.06	uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=...	[more]
A0A6J1GYH6	1.8e-28	79.78	transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=...	[more]

BLAST of Lcy13g001990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151226.1	2.2e-33	89.13	transcription factor PAR2 [Momordica charantia]	[more]
XP_038891463.1	6.0e-31	87.64	transcription factor PAR2 [Benincasa hispida]	[more]
XP_011655641.1	7.8e-31	91.46	uncharacterized protein LOC105435564 [Cucumis sativus] >KGN51823.1 hypothetical ...	[more]
XP_022977324.1	6.6e-30	83.15	uncharacterized protein LOC111477674 [Cucurbita maxima]	[more]
XP_008446236.1	1.9e-29	87.06	PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo]	[more]

BLAST of Lcy13g001990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23965.1	2.1e-10	56.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G70270.1	1.9e-06	48.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G42870.1	2.3e-04	44.44	phy rapidly regulated 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	PANTHER	PTHR33124:SF9	TRANSCRIPTION FACTOR	coord: 10..83
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 10..83
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 34..78 e-value: 3.05541E-13 score: 56.4768

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g001990.1	Lcy13g001990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated