Lcy12g022230 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g022230
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Late embryogenesis abundant protein group 8 protein
Location	Chr12: 49127198 .. 49127479 (+)
RNA-Seq Expression	Lcy12g022230
Synteny	Lcy12g022230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAATAAGGAAGAGCAGCAACAACAGCAAATGGTGGGGAAGAGAGAAGAGAAGGCTCCGGTGGAAGAATTGTTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGATTTGGAAGAGTACAAAAAGAAAGGGTATGGGACGGAGGGGCATCTTGAGCCCAAGCCCAACCAGGGCGGCGGCGGCGGCACAGACGCACCCACCTTGTCCGGCAGCGGCTTCCCGGAGGTGAAGCCCGCCTCCATTGACGCCGTCACCAAAGAAGGCCTTATCCCCTGA

mRNA sequence

ATGTCGAATAAGGAAGAGCAGCAACAACAGCAAATGGTGGGGAAGAGAGAAGAGAAGGCTCCGGTGGAAGAATTGTTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGATTTGGAAGAGTACAAAAAGAAAGGGTATGGGACGGAGGGGCATCTTGAGCCCAAGCCCAACCAGGGCGGCGGCGGCGGCACAGACGCACCCACCTTGTCCGGCAGCGGCTTCCCGGAGGTGAAGCCCGCCTCCATTGACGCCGTCACCAAAGAAGGCCTTATCCCCTGA

Coding sequence (CDS)

ATGTCGAATAAGGAAGAGCAGCAACAACAGCAAATGGTGGGGAAGAGAGAAGAGAAGGCTCCGGTGGAAGAATTGTTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGATTTGGAAGAGTACAAAAAGAAAGGGTATGGGACGGAGGGGCATCTTGAGCCCAAGCCCAACCAGGGCGGCGGCGGCGGCACAGACGCACCCACCTTGTCCGGCAGCGGCTTCCCGGAGGTGAAGCCCGCCTCCATTGACGCCGTCACCAAAGAAGGCCTTATCCCCTGA

Protein sequence

MSNKEEQQQQQMVGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGGGGGTDAPTLSGSGFPEVKPASIDAVTKEGLIP

Homology

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BLAST of Lcy12g022230 vs. ExPASy TrEMBL
Match: A0A5A7V8I8 (Late embryogenesis abundant protein group 8 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00410 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.8e-31
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 5  EEQQQQQMVGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGGGGG 64
          EEQ Q QM+GK EEKAPVE+LLPLESSPYVKYKDLEEYK+KGYG EGHLEPKPNQ  GGG
Sbjct: 2  EEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ--GGG 61

Query: 65 TDAPTLSGSGFPEVKPASIDAVTKEGLI 93
          TDAPTLSGSG+PEV+P +ID VTK+GLI
Sbjct: 62 TDAPTLSGSGYPEVQPTTIDVVTKQGLI 87

[Close]

BLAST of Lcy12g022230 vs. ExPASy TrEMBL
Match: A0A6J1FA12 (uncharacterized protein LOC111443639 OS=Cucurbita moschata OX=3662 GN=LOC111443639 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-30
Identity = 73/91 (80.22%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 2  SNKEEQQQQQMVGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGG 61
          S +E+QQQQQ+V ++EEK  VEELLPLESSPYVKYKDLEEYK+KGYG EGHLEPKPNQ  
Sbjct: 4  SEEEQQQQQQLVREKEEKDSVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ-- 63

Query: 62 GGGTDAPTLSGSGFPEVKPASIDAVTKEGLI 93
          GGGTDAPTLSGSGFPEVKPA+ID VT  GL+
Sbjct: 64 GGGTDAPTLSGSGFPEVKPATIDFVTNHGLL 92

[Close]

BLAST of Lcy12g022230 vs. ExPASy TrEMBL
Match: A0A6J1C2A9 (uncharacterized protein LOC111007621 OS=Momordica charantia OX=3673 GN=LOC111007621 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.7e-29
Identity = 76/101 (75.25%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MSNKEEQQQQQM------VGKR-EEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHL 60
           MS  EEQ Q Q+      +GKR EEKA VEELLPLESSPYVKYKDLEEYK++GYG EGHL
Sbjct: 1   MSKSEEQAQAQVQPQTRTMGKREEEKASVEELLPLESSPYVKYKDLEEYKREGYGAEGHL 60

Query: 61  EPKPNQG-GGGGTDAPTLSGSGFPEVKPASIDAVTKEGLIP 94
           EPKPNQG GGGGTDAPTLSG+GFPEVKP++ID  T +GLIP
Sbjct: 61  EPKPNQGQGGGGTDAPTLSGAGFPEVKPSTIDVATNQGLIP 101

[Close]

BLAST of Lcy12g022230 vs. ExPASy TrEMBL
Match: A0A0A0L5Y6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 17  EEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGGGGGTDAPTLSGSGFP 76
           EEKAPVE+LLPLESSPYVKYKDLEEYK+KGYG EGHL PKPNQ  GGGTDAPTLSGSG P
Sbjct: 81  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQ--GGGTDAPTLSGSGLP 140

Query: 77  EVKPASIDAVTKEGLI 93
           EV+P +ID VTK+GLI
Sbjct: 141 EVQPTTIDIVTKQGLI 154

[Close]

BLAST of Lcy12g022230 vs. ExPASy TrEMBL
Match: A0A7J7C4J8 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01199 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MSNKEEQQQQQMVGKREE-KAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQ 60
          MSN  EQ  Q+   + E+ K  V E LP+ESSPYVKY +LE+YK+K YGTEGHL   PNQ
Sbjct: 1  MSNCSEQMAQKTESREEQKKESVLEGLPMESSPYVKYTNLEDYKRKAYGTEGHLPVNPNQ 60

Query: 61 GGGGGTDAPTLSGSGFPEVKPASIDAVTKEGL 92
          GGGGGTDAPT+SGSG  + K A +D   + G+
Sbjct: 61 GGGGGTDAPTVSGSGLSDGKAADVDTANRHGI 92

[Close]

BLAST of Lcy12g022230 vs. NCBI nr
Match: KAE8649966.1 (hypothetical protein Csa_012992 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 8.2e-31
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MSNKEEQQQQQMVGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQG 60
          MSN EEQ Q QM+GK EEKAPVE+LLPLESSPYVKYKDLEEYK+KGYG EGHL PKPNQ 
Sbjct: 1  MSNMEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQ- 60

Query: 61 GGGGTDAPTLSGSGFPEVKPASIDAVTKEGLI 93
           GGGTDAPTLSGSG PEV+P +ID VTK+GLI
Sbjct: 61 -GGGTDAPTLSGSGLPEVQPTTIDIVTKQGLI 90

[Close]

BLAST of Lcy12g022230 vs. NCBI nr
Match: KAA0064662.1 (late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa] >TYK19929.1 late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-30
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 5  EEQQQQQMVGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGGGGG 64
          EEQ Q QM+GK EEKAPVE+LLPLESSPYVKYKDLEEYK+KGYG EGHLEPKPNQ  GGG
Sbjct: 2  EEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ--GGG 61

Query: 65 TDAPTLSGSGFPEVKPASIDAVTKEGLI 93
          TDAPTLSGSG+PEV+P +ID VTK+GLI
Sbjct: 62 TDAPTLSGSGYPEVQPTTIDVVTKQGLI 87

[Close]

BLAST of Lcy12g022230 vs. NCBI nr
Match: XP_023535424.1 (uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 74/91 (81.32%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 2  SNKEEQQQQQMVGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGG 61
          S +E+QQQQQ+V ++EEKA VEELLPLESSPYVKYKDLEEYK+KGYG EGHLEPKPNQ  
Sbjct: 4  SEEEQQQQQQLVREKEEKASVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ-- 63

Query: 62 GGGTDAPTLSGSGFPEVKPASIDAVTKEGLI 93
          GGGTDAPTLSGSGFPEVKPA+ID VT  GL+
Sbjct: 64 GGGTDAPTLSGSGFPEVKPATIDFVTNHGLL 92

[Close]

BLAST of Lcy12g022230 vs. NCBI nr
Match: XP_022937316.1 (uncharacterized protein LOC111443639 [Cucurbita moschata] >KAG6591201.1 hypothetical protein SDJN03_13547, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024086.1 hypothetical protein SDJN02_12899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 9.0e-30
Identity = 73/91 (80.22%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 2  SNKEEQQQQQMVGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGG 61
          S +E+QQQQQ+V ++EEK  VEELLPLESSPYVKYKDLEEYK+KGYG EGHLEPKPNQ  
Sbjct: 4  SEEEQQQQQQLVREKEEKDSVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQ-- 63

Query: 62 GGGTDAPTLSGSGFPEVKPASIDAVTKEGLI 93
          GGGTDAPTLSGSGFPEVKPA+ID VT  GL+
Sbjct: 64 GGGTDAPTLSGSGFPEVKPATIDFVTNHGLL 92

[Close]

BLAST of Lcy12g022230 vs. NCBI nr
Match: XP_022135734.1 (uncharacterized protein LOC111007621 [Momordica charantia])

HSP 1 Score: 137.1 bits (344), Expect = 7.7e-29
Identity = 76/101 (75.25%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MSNKEEQQQQQM------VGKR-EEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHL 60
           MS  EEQ Q Q+      +GKR EEKA VEELLPLESSPYVKYKDLEEYK++GYG EGHL
Sbjct: 1   MSKSEEQAQAQVQPQTRTMGKREEEKASVEELLPLESSPYVKYKDLEEYKREGYGAEGHL 60

Query: 61  EPKPNQG-GGGGTDAPTLSGSGFPEVKPASIDAVTKEGLIP 94
           EPKPNQG GGGGTDAPTLSG+GFPEVKP++ID  T +GLIP
Sbjct: 61  EPKPNQGQGGGGTDAPTLSGAGFPEVKPSTIDVATNQGLIP 101

[Close]

BLAST of Lcy12g022230 vs. TAIR 10
Match: AT2G33690.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 67.0 bits (162), Expect = 9.1e-12
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 13 VGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGGGGGTDAPTLSG 72
          + K EEK    + LPLE+SPY KY+D+E+YKK  YGT GH + KP   GGG TDAPT SG
Sbjct: 1  MSKSEEK----QELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH-GGGTTDAPTPSG 60

Query: 73 SGFPEVKPASIDAVTKE 90
              +  P++ID+  ++
Sbjct: 61 ----DAAPSAIDSANQK 68

[Close]

BLAST of Lcy12g022230 vs. TAIR 10
Match: AT2G23110.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-08
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 6  EQQQQQMVGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGGGGGT 65
          E Q++    ++E K    + L    +PY+ Y +LE+YK KGYG +GH EPK    GGG T
Sbjct: 2  EDQKKPPTTEQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGM-GGGAT 61

Query: 66 DAPTLS-----GSGFPEVKPASIDAVTKEGL 92
          DAPT S     G G      +S DA+ ++G+
Sbjct: 62 DAPTPSGGLGRGGGAASTDLSSTDAINRQGV 91

[Close]

BLAST of Lcy12g022230 vs. TAIR 10
Match: AT2G23110.2 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-08
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 6  EQQQQQMVGKREEKAPVEELLPLESSPYVKYKDLEEYKKKGYGTEGHLEPKPNQGGGGGT 65
          E Q++    ++E K    + L    +PY+ Y +LE+YK KGYG +GH EPK    GGG T
Sbjct: 2  EDQKKPPTTEQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGM-GGGAT 61

Query: 66 DAPTLS-----GSGFPEVKPASIDAVTKEGL 92
          DAPT S     G G      +S DA+ ++G+
Sbjct: 62 DAPTPSGGLGRGGGAASTDLSSTDAINRQGV 91

[Close]

BLAST of Lcy12g022230 vs. TAIR 10
Match: AT2G23120.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 26/42 (61.90%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 31 SPYVKYKDLEEYKKKGYGTEGHLEPKPNQGGGGGTDAPTLSG 73
          SPY+    LE+YK K YG EGH EP P   GGG TDAPT SG
Sbjct: 30 SPYMATGTLEDYKLKAYGAEGHQEPTPGL-GGGSTDAPTPSG 70

The following BLAST results are available for this feature:

BLAST of Lcy12g022230 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g022230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8I8	6.8e-31	82.95	Late embryogenesis abundant protein group 8 protein OS=Cucumis melo var. makuwa ...	[more]
A0A6J1FA12	4.4e-30	80.22	uncharacterized protein LOC111443639 OS=Cucurbita moschata OX=3662 GN=LOC1114436...	[more]
A0A6J1C2A9	3.7e-29	75.25	uncharacterized protein LOC111007621 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A0A0L5Y6	2.2e-26	84.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1	[more]
A0A7J7C4J8	1.9e-17	57.61	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01199 ...	[more]

BLAST of Lcy12g022230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649966.1	8.2e-31	81.52	hypothetical protein Csa_012992 [Cucumis sativus]	[more]
KAA0064662.1	1.4e-30	82.95	late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa] >...	[more]
XP_023535424.1	1.8e-30	81.32	uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo]	[more]
XP_022937316.1	9.0e-30	80.22	uncharacterized protein LOC111443639 [Cucurbita moschata] >KAG6591201.1 hypothet...	[more]
XP_022135734.1	7.7e-29	75.25	uncharacterized protein LOC111007621 [Momordica charantia]	[more]

BLAST of Lcy12g022230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33690.1	9.1e-12	49.35	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	3.6e-08	39.56	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.2	3.6e-08	39.56	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	3.3e-06	61.90	Late embryogenesis abundant protein, group 6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 19..91 e-value: 5.5E-30 score: 103.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..93
None	No IPR available	PANTHER	PTHR33922	OS01G0888066 PROTEIN-RELATED	coord: 4..92
None	No IPR available	PANTHER	PTHR33922:SF15	SUBFAMILY NOT NAMED	coord: 4..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g022230.1	Lcy12g022230.1	mRNA