Lcy12g021620 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g021620
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Actin-binding transcription modulator
Location	Chr12: 48612861 .. 48615254 (-)
RNA-Seq Expression	Lcy12g021620
Synteny	Lcy12g021620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCATCAGAGCTATTTCGGTCGGAAACTTGAGAATTCTCCGATCATCCTCCGATTTTTCTGATAATCTCCGATGGAGCGTGAAGAAACCAACGATGTTCCAATTGCGGTTCAAAATTCTCCACAACCGCCGCCGCTGGAGGAGCAGCAACCACAACAACCGGCAGAACCATTGCCGAAACCATCCCAAGAAGATGAACAAGACGAAGAGTTACGTAAACTTCTGGTTCCCGATGTTAGGGATCTTCCTCTCGAGCCTTCCTCCGCCATCGAAACAAATTTTGTCTCGTATTTCGCTCCTGGTACGTTCACTGTCGCCATATCTTTTTCAAATTCATAATGGAGGTTTTATTAAACCCTAAACCCTCTGATTACTCTGACTAATTCGTCGTCTGATTTTCAGATTTTATGAAGGAAGGTCATGATCAGTACGTTTACCGCCACGCTAACGGGTATCGATCTTTGTTTCACTAGTTTATCTGATGAATTATTCTCCGCTCCACTTAATTTACTCATTCACCTCGTTTTTCTTAATCTAGCTTGTGCGTTATTGGCTTGGCTCCTACGCATGTTGCATTCAAAGACAGTGGTGGTGTTACGACCGTTGATTTCAATGTTGGGAAATCTGATCGCAGTAGCTTTAAAGTTACTGGGAAACGCAAGAAGGTATAGAAATGGCCATTGCGAATTTACAAACTAGTTCGCGTTACTTATGATTAAAGAAACAGTGTTGCTAGGAATAATCGTTTATACAAATGTTAGTTGTGATAAAACCTCGTTTCTTCACCATATCGTAGACAGAACATTTTCTTAGCATATCACGGATAGATTATGTTTTCAGTTTTAGAACGTATTTGAGAACCAGCTTTGGCTTTGGAGTTCTTTTATCACAATGGATGTGACTTTTTAGTAGCATTGTGGGCACATATGGAAATTCTACATATATGATGGGAAAACTTTTTACTGAATTTCTTTAACAGTTTTTTACACCTCGAACGTTGAATTTTAACTCCTGTTCCGTATGTGAATCTGGATACTTAAAATTAATTTGTTGTGCTGAAGTCACTAGTGTTACTTTGCAGAATGCGCAATTCTTTGAGCCCAACTCTGCTCTATGTAAAGTTTGCACCAAAGATGCTTCTTATATTGTAAGGTTGGATCTTTTTGCTTTTCACCAATTGCTGATGATGCTGGGTCCATTGGTTTCTCTTCAATTACAAGTCAGTTCTTTTATGTTATTATTAGGTGTTCTGTTAAAGGTTCTCTATTGGAAGTAAATGATCGCTTATTGAAGCAGCCAGAATTGCTCAACACTGTGGTGAGGATGACCTTTTCATTTAATGCCCGTTTACGGTTTAAGAATATTGATTGCTGATACTGTAGTTCAGGAAAGCGTGGTTGTTTTACAACCCTATGAGCACACTAGTCACTACAGCACTAAAATTTGTTTTATCGCTGGTTGGTCAGCAGATTTAGAAAACCACAAATGAAAAGTAATGTCGATATAGTAGCAGATGTGTGATAGATAGAGTCGCCTTGTTAGACTTCTCTTCTTGGATGCACTGATGGGCATGTAAAGTGACTACTGTTGAGATTTCTTGTTAATGCTTGGATGACAAATTTCCCATGAATTTTTTCTGGAAGATGAGCTCCCCCCTCCCCACTATTATCGCATGCTTATGATAATTACTGCATATCAACGGCTGAAGGGGGGAAAAAGCAGGTTTTCCTTTCTTATTTGTTTCATTCTCTGAACTAAAGAGTGCAGTAGTTAGAGTATTAGCTATCTCCTCCTTTATTTTATAGACTGTGTCGGTCATCTTTAGTGTTTCAATGATATGACTATTTATGTTAATACAGGCTCACAGAGAAGGGTACATTGCTATTGTTATGCCAAAGCCAGGAGATTGGCTGAAAGTAAAGGAGTCATTGCTGAGCCTGGAAGAATACAAAAGATTGAGAGAAGTGCACTGAGTCATTCATCCGCCTATACAAACAAGTAACTTTCAGATTCCTTCCATTGATGCTTCCTCCATCTGTTCTTTAACTTGCCAGGTTTATCTCGCAGCTTATTTTACAGACTTCTGACTGATAATAATTCACTCAATTCTGGTAAGCTTGAGAAAAAAAAAATTATATATTTACCTCGCCTGGCATTTTGTGATTTTATATACAAGTATAAAAGTTTAAATCATATTTTAGTATGTGAACTTTCAATCCGTATAGCTTCAAGTTTTTGGTTCTTGCCACTTAATTTCAGCACTGCACTTGGTAAAAGTCTCATGTGGCATCATGTAGCCTTGTATTCAAGATTTTTATGAAATAGAAGATAGAAAATTTGACAAAAAATACCAGAATAGAGTGTTTATGAAAGTTTGAGGACCAAAATAAGAT

mRNA sequence

GCAGCATCAGAGCTATTTCGGTCGGAAACTTGAGAATTCTCCGATCATCCTCCGATTTTTCTGATAATCTCCGATGGAGCGTGAAGAAACCAACGATGTTCCAATTGCGGTTCAAAATTCTCCACAACCGCCGCCGCTGGAGGAGCAGCAACCACAACAACCGGCAGAACCATTGCCGAAACCATCCCAAGAAGATGAACAAGACGAAGAGTTACGTAAACTTCTGGTTCCCGATGTTAGGGATCTTCCTCTCGAGCCTTCCTCCGCCATCGAAACAAATTTTGTCTCGTATTTCGCTCCTGATTTTATGAAGGAAGGTCATGATCAGTACGTTTACCGCCACGCTAACGGCTTGTGCGTTATTGGCTTGGCTCCTACGCATGTTGCATTCAAAGACAGTGGTGGTGTTACGACCGTTGATTTCAATGTTGGGAAATCTGATCGCAGTAGCTTTAAAGTTACTGGGAAACGCAAGAAGAATGCGCAATTCTTTGAGCCCAACTCTGCTCTATGTAAAGTTTGCACCAAAGATGCTTCTTATATTGTAAGGTGTTCTGTTAAAGGTTCTCTATTGGAAGTAAATGATCGCTTATTGAAGCAGCCAGAATTGCTCAACACTGTGGCTCACAGAGAAGGGTACATTGCTATTGTTATGCCAAAGCCAGGAGATTGGCTGAAAGTAAAGGAGTCATTGCTGAGCCTGGAAGAATACAAAAGATTGAGAGAAGTGCACTGAGTCATTCATCCGCCTATACAAACAAGTAACTTTCAGATTCCTTCCATTGATGCTTCCTCCATCTGTTCTTTAACTTGCCAGGTTTATCTCGCAGCTTATTTTACAGACTTCTGACTGATAATAATTCACTCAATTCTGGTAAGCTTGAGAAAAAAAAAATTATATATTTACCTCGCCTGGCATTTTGTGATTTTATATACAAGTATAAAAGTTTAAATCATATTTTAGTATGTGAACTTTCAATCCGTATAGCTTCAAGTTTTTGGTTCTTGCCACTTAATTTCAGCACTGCACTTGGTAAAAGTCTCATGTGGCATCATGTAGCCTTGTATTCAAGATTTTTATGAAATAGAAGATAGAAAATTTGACAAAAAATACCAGAATAGAGTGTTTATGAAAGTTTGAGGACCAAAATAAGAT

Coding sequence (CDS)

ATGGAGCGTGAAGAAACCAACGATGTTCCAATTGCGGTTCAAAATTCTCCACAACCGCCGCCGCTGGAGGAGCAGCAACCACAACAACCGGCAGAACCATTGCCGAAACCATCCCAAGAAGATGAACAAGACGAAGAGTTACGTAAACTTCTGGTTCCCGATGTTAGGGATCTTCCTCTCGAGCCTTCCTCCGCCATCGAAACAAATTTTGTCTCGTATTTCGCTCCTGATTTTATGAAGGAAGGTCATGATCAGTACGTTTACCGCCACGCTAACGGCTTGTGCGTTATTGGCTTGGCTCCTACGCATGTTGCATTCAAAGACAGTGGTGGTGTTACGACCGTTGATTTCAATGTTGGGAAATCTGATCGCAGTAGCTTTAAAGTTACTGGGAAACGCAAGAAGAATGCGCAATTCTTTGAGCCCAACTCTGCTCTATGTAAAGTTTGCACCAAAGATGCTTCTTATATTGTAAGGTGTTCTGTTAAAGGTTCTCTATTGGAAGTAAATGATCGCTTATTGAAGCAGCCAGAATTGCTCAACACTGTGGCTCACAGAGAAGGGTACATTGCTATTGTTATGCCAAAGCCAGGAGATTGGCTGAAAGTAAAGGAGTCATTGCTGAGCCTGGAAGAATACAAAAGATTGAGAGAAGTGCACTGA

Protein sequence

MEREETNDVPIAVQNSPQPPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLPLEPSSAIETNFVSYFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVGKSDRSSFKVTGKRKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPELLNTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYKRLREVH

Homology

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BLAST of Lcy12g021620 vs. ExPASy Swiss-Prot
Match: Q28G67 (Protein Abitram OS=Xenopus tropicalis OX=8364 GN=abitram PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.5e-20
Identity = 54/160 (33.75%), Postives = 89/160 (55.62%), Query Frame = 0


Query: 60  LEPSSAIETNFVSYFAPDFM-KEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFN 119
           LE  S ++  F  ++  D   K   D  + +H+N +C+I LA  H   ++   + T+ + 
Sbjct: 9   LEFPSVVDRYFKRWYKSDVKGKPCEDHCILQHSNRICIITLAECHPLLQNGKTIKTISYQ 68

Query: 120 VGKS-DRSSFKVTGKRKKNAQFFEPNSALCKVCTKDA-SYIVRCSVKGSLLEVNDRLLKQ 179
           +  +  R   KV+GK K+ AQF   ++ LC++ + D   Y +   ++G LLEVN+ +L+ 
Sbjct: 69  ISANCSRLQNKVSGKSKRGAQFLTEHAPLCRISSTDGEEYTIYSCIRGRLLEVNENILQN 128

Query: 180 PELLNTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYKRL 217
           PELL      EGYIA+V+PK  +   V E LLS +EY+ +
Sbjct: 129 PELLKEKPSTEGYIAVVLPKFEESKTVTEGLLSQQEYEEI 168

[Close]

BLAST of Lcy12g021620 vs. ExPASy Swiss-Prot
Match: Q80ZQ9 (Protein Abitram OS=Mus musculus OX=10090 GN=Abitram PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-19
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 0


Query: 45  EELR----KLLVPDV---RDLPLEPSSAIETNFVSYFAPDFM-KEGHDQYVYRHANGLCV 104
           EELR    KL  P+V    + P  P S ++  F  ++  D   K   D  + +H+N +CV
Sbjct: 2   EELRCPEAKLAPPEVVIATEAP--PPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICV 61

Query: 105 IGLAPTHVAFKDSGGVTTVDFNVGKS-DRSSFKVTGKRKKNAQFFEPNSALCKV-CTKDA 164
           I LA +H   +    +  + + +  +  R   KV+GK K+ AQF    + LCK+ C+   
Sbjct: 62  ITLAGSHPVLQSGKAIQRISYQISNNCSRLENKVSGKFKRGAQFLTELAPLCKIYCSDGE 121

Query: 165 SYIVRCSVKGSLLEVNDRLLKQPELLNTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYK 217
            Y +   V+G L+EVN+ +L QP LL      EGYIA+V+PK  +   V E LL+ ++Y+
Sbjct: 122 EYTISSCVRGRLMEVNENILHQPSLLQEKPSTEGYIAVVLPKFEESKSVTEGLLTQQQYE 181

[Close]

BLAST of Lcy12g021620 vs. ExPASy Swiss-Prot
Match: Q29S16 (Protein Abitram OS=Bos taurus OX=9913 GN=ABITRAM PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.9e-19
Identity = 58/173 (33.53%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 55  VRDLPLEPS--SAIETNFVSYFAPDFM-KEGHDQYVYRHANGLCVIGLAPTHVAFKDSGG 114
           V DL  EP+  S ++  F  ++  D   K   D  + +H+N +CVI LA +H   +    
Sbjct: 9   VADLAPEPAVPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKT 68

Query: 115 VTTVDFNVGKS-DRSSFKVTGKRKKNAQFFEPNSALCKV-CTKDASYIVRCSVKGSLLEV 174
           + ++ + +  +  R   KV+GK K+ AQF    + LCK+ C+    Y +   V+G L+EV
Sbjct: 69  IKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEV 128

Query: 175 NDRLLKQPELLNTVAHREGYIAIVMPKPGDWLKVKESLLSLEEY-----KRLR 218
           N+ +L +P +L      EGYIA+V+PK  +   + E LL+ +EY     KRLR
Sbjct: 129 NENILHKPSILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKEYEEVVVKRLR 181

[Close]

BLAST of Lcy12g021620 vs. ExPASy Swiss-Prot
Match: Q1LU93 (Protein Abitram OS=Danio rerio OX=7955 GN=abitram PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-18
Identity = 50/156 (32.05%), Postives = 87/156 (55.77%), Query Frame = 0


Query: 64  SAIETNFVSYFAPDFM-KEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVGKS 123
           S I+  F  ++  D   K   D  + +H+N +CVI LA +H  F++   +  +++ +   
Sbjct: 11  SVIDRYFTRWYRTDLKGKPCEDHCILQHSNRICVITLAESHPIFQNGRKIKNINYQISDG 70

Query: 124 -DRSSFKVTGKRKKNAQFFEPNSALCKV-CTKDASYIVRCSVKGSLLEVNDRLLKQPELL 183
             R   KV+GK K+  QF    + LC++ CT +  + +   ++G LLEVN+ +L +P+LL
Sbjct: 71  CSRLKNKVSGKSKRGGQFLTEFAPLCRITCTDEQEFTIFSCIRGRLLEVNEVILNKPDLL 130

Query: 184 NTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYKRL 217
                 EGYIA+++PK  +   V E LL+ E+Y+ +
Sbjct: 131 MEKPSTEGYIAVILPKFEESKSVTEGLLTREQYEEI 166

[Close]

BLAST of Lcy12g021620 vs. ExPASy Swiss-Prot
Match: Q6GR35 (Protein Abitram OS=Xenopus laevis OX=8355 GN=abitram PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-18
Identity = 55/175 (31.43%), Postives = 90/175 (51.43%), Query Frame = 0


Query: 45  EELRKLLVPDVRDLPLEPSSAIETNFVSYFAPDFM-KEGHDQYVYRHANGLCVIGLAPTH 104
           EE  KL  P          S ++  F  ++ PD   K   D  + +H+N +C+I LA  H
Sbjct: 3   EESNKLAFP----------SVVDRYFTRWYKPDIKGKPCEDHCILQHSNRICIITLAECH 62

Query: 105 VAFKDSGGVTTVDFNVGKS-DRSSFKVTGKRKKNAQFFEPNSALCKVCTKDA-SYIVRCS 164
              ++   + ++ + +  +  R   KV+GK K+ AQF    + LC++ + D   Y +   
Sbjct: 63  PLLQNEKTIKSISYQISANCSRLQNKVSGKSKRGAQFLTELAPLCRISSTDGEEYTIYSC 122

Query: 165 VKGSLLEVNDRLLKQPELLNTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYKRL 217
           ++G LLEVN+ +L+ P LL      EGYIA+V+PK  +   + E LLS  EY+ +
Sbjct: 123 IRGRLLEVNENILQNPGLLKEKPSTEGYIAVVLPKFEESKTITEGLLSQREYEEI 167

[Close]

BLAST of Lcy12g021620 vs. ExPASy TrEMBL
Match: A0A6J1CMG0 (Actin-binding transcription modulator OS=Momordica charantia OX=3673 GN=LOC111012618 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.9e-102
Identity = 190/219 (86.76%), Postives = 203/219 (92.69%), Query Frame = 0


Query: 1   MEREETNDVPIAVQNSPQPPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLPL 60
           ME   T+DV   V+N+PQP P EEQQ QQPA+PLP+PSQEDEQDEELR+LLVPDVRDLPL
Sbjct: 1   MEHGGTDDVQTTVRNTPQPQPPEEQQQQQPAQPLPRPSQEDEQDEELRRLLVPDVRDLPL 60

Query: 61  EPSSAIETNFVSYFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVG 120
            P SA++TNFVSYF PDFMK+GHDQYVYRHANGLCVIGLA TH+AFKDSGG+T VDFNVG
Sbjct: 61  SPPSAVDTNFVSYFVPDFMKQGHDQYVYRHANGLCVIGLASTHIAFKDSGGITAVDFNVG 120

Query: 121 KSDRSSFKVTGKRKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPELL 180
           KSDRSSFKVTGKRKKNAQFFEPNSALCKV TKDASYIVRCSVKGSLLEVNDRL+KQPELL
Sbjct: 121 KSDRSSFKVTGKRKKNAQFFEPNSALCKVVTKDASYIVRCSVKGSLLEVNDRLMKQPELL 180

Query: 181 NTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYKRLREV 220
           NTVAHREGYIAIVMPKP DWLKVKESLLSLEEYKRLRE+
Sbjct: 181 NTVAHREGYIAIVMPKPADWLKVKESLLSLEEYKRLREM 219

[Close]

BLAST of Lcy12g021620 vs. ExPASy TrEMBL
Match: A0A6J1F8C5 (protein Simiate OS=Cucurbita moschata OX=3662 GN=LOC111443247 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.3e-101
Identity = 187/207 (90.34%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 13  VQNSPQPPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLPLEPSSAIETNFVS 72
           VQNSPQPPPLEEQQPQ+P EPLPK SQ+DE DEELRKLL+PDVRDLP  P SA+ETNFVS
Sbjct: 2   VQNSPQPPPLEEQQPQKPPEPLPKSSQDDELDEELRKLLIPDVRDLPFAPPSAVETNFVS 61

Query: 73  YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVGKSDRSSFKVTGK 132
           YFAPDFMKEGHDQYVYRHANGLCVIGLAPTH+AFKDS G+T VDFNVGKSDRSSFKVTGK
Sbjct: 62  YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHIAFKDSSGITAVDFNVGKSDRSSFKVTGK 121

Query: 133 RKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPELLNTVAHREGYIAI 192
           RKKNAQFFEPNSA+CKVCTKDASYIVRCSVKGSLLEVNDRL+KQPELL  VAHREGYIAI
Sbjct: 122 RKKNAQFFEPNSAICKVCTKDASYIVRCSVKGSLLEVNDRLMKQPELLKNVAHREGYIAI 181

Query: 193 VMPKPGDWLKVKESLLSLEEYKRLREV 220
           VMPKP DW+KVKESLLSLEEYKRLREV
Sbjct: 182 VMPKPADWVKVKESLLSLEEYKRLREV 208

[Close]

BLAST of Lcy12g021620 vs. ExPASy TrEMBL
Match: A0A6J1IHU0 (protein Simiate OS=Cucurbita maxima OX=3661 GN=LOC111476416 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.2e-99
Identity = 185/207 (89.37%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 13  VQNSPQPPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLPLEPSSAIETNFVS 72
           V NSPQPPPLEEQQPQ+P EPLPK SQ+DE DEELRKLL+PDVRDLP  P SA+ETNFVS
Sbjct: 2   VLNSPQPPPLEEQQPQKPPEPLPKFSQDDELDEELRKLLIPDVRDLPFAPPSAVETNFVS 61

Query: 73  YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVGKSDRSSFKVTGK 132
           YFAPDFMKEGHDQYVYRHANGLCVIGLAPTH+AFKDS G+T VDFNVGKSDRSSFKVTGK
Sbjct: 62  YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHIAFKDSSGITAVDFNVGKSDRSSFKVTGK 121

Query: 133 RKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPELLNTVAHREGYIAI 192
           RKKNAQFFEPNSA+CKVCTKDASYIVRCSVKGSLLEVNDRL+KQPELL  VAHREGYIAI
Sbjct: 122 RKKNAQFFEPNSAICKVCTKDASYIVRCSVKGSLLEVNDRLMKQPELLKNVAHREGYIAI 181

Query: 193 VMPKPGDWLKVKESLLSLEEYKRLREV 220
           VMPKP DW+KVKESLLSLE YKRLREV
Sbjct: 182 VMPKPADWVKVKESLLSLEGYKRLREV 208

[Close]

BLAST of Lcy12g021620 vs. ExPASy TrEMBL
Match: A0A0A0LDM0 (Actin-binding transcription modulator OS=Cucumis sativus OX=3659 GN=Csa_3G874330 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96
Identity = 190/223 (85.20%), Postives = 201/223 (90.13%), Query Frame = 0


Query: 1   MEREET-NDVPIAVQN-SPQ-PPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRD 60
           ME  ET NDV + VQN SP  PPPLE  + QQ AEPLPK  QEDEQDEELRKLL PDVRD
Sbjct: 1   MEHGETDNDVHMTVQNPSPSPPPPLENHELQQLAEPLPKSFQEDEQDEELRKLLTPDVRD 60

Query: 61  LPLEPSSAIETNFVSYFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDF 120
           LPL P SA+ETNFVSYFAPDF+KEGHDQYVYRHANGLCV+GLA TH+AFKDSGGVT VDF
Sbjct: 61  LPLVPPSAVETNFVSYFAPDFIKEGHDQYVYRHANGLCVVGLAATHIAFKDSGGVTAVDF 120

Query: 121 NVGKSDRSSFKVTGKRKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQP 180
           NVGKSDRSSFKVTGKRKKNAQFFEPNSALCKV TKDASYIVRCSVKGSLLEVNDRL+KQP
Sbjct: 121 NVGKSDRSSFKVTGKRKKNAQFFEPNSALCKVYTKDASYIVRCSVKGSLLEVNDRLIKQP 180

Query: 181 ELLNTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYKRLREVH 221
           ELLNT+ HREGYIAIVMPKP DWLKVKESLLSLEE+KRLRE++
Sbjct: 181 ELLNTLPHREGYIAIVMPKPADWLKVKESLLSLEEHKRLRELN 223

[Close]

BLAST of Lcy12g021620 vs. ExPASy TrEMBL
Match: A0A1S4E5T9 (Actin-binding transcription modulator OS=Cucumis melo OX=3656 GN=LOC103503860 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.7e-96
Identity = 189/223 (84.75%), Postives = 200/223 (89.69%), Query Frame = 0


Query: 1   MEREET-NDVPIAVQNSPQP--PPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRD 60
           ME  +T NDV + VQ+S  P  PPLE+Q+ QQ AEPLPK  QEDEQDEELRKLL PDVRD
Sbjct: 1   MEHGDTNNDVHVTVQSSSPPPLPPLEKQELQQLAEPLPKSFQEDEQDEELRKLLTPDVRD 60

Query: 61  LPLEPSSAIETNFVSYFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDF 120
           LPL P SA+ETNFVSYFAPDF+KEGHDQYVYRHANGLCVIGLA TH+AFKD GGVT VDF
Sbjct: 61  LPLVPPSAVETNFVSYFAPDFIKEGHDQYVYRHANGLCVIGLAATHIAFKDGGGVTAVDF 120

Query: 121 NVGKSDRSSFKVTGKRKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQP 180
           NVGKSDRSSFKVTGKRKKNAQFFEPNSALCKV TKDASYIVRCSVKGSLLEVNDRL+KQP
Sbjct: 121 NVGKSDRSSFKVTGKRKKNAQFFEPNSALCKVYTKDASYIVRCSVKGSLLEVNDRLIKQP 180

Query: 181 ELLNTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYKRLREVH 221
           ELLNTV HREGYIAIVMPK  DWLKVKESLLSLEEYKRLRE++
Sbjct: 181 ELLNTVPHREGYIAIVMPKAADWLKVKESLLSLEEYKRLRELN 223

[Close]

BLAST of Lcy12g021620 vs. NCBI nr
Match: XP_038896120.1 (protein Abitram [Benincasa hispida] >XP_038896121.1 protein Abitram [Benincasa hispida] >XP_038896122.1 protein Abitram [Benincasa hispida])

HSP 1 Score: 381.7 bits (979), Expect = 4.2e-102
Identity = 195/221 (88.24%), Postives = 205/221 (92.76%), Query Frame = 0


Query: 1   MEREET-NDVPIAVQNSPQPPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLP 60
           ME  ET N+V + VQNSPQPPPLEEQ+ QQ  EPLPK  QEDEQDEELRKLL+PDVRDLP
Sbjct: 1   MEHGETNNNVHVTVQNSPQPPPLEEQELQQLTEPLPKSFQEDEQDEELRKLLIPDVRDLP 60

Query: 61  LEPSSAIETNFVSYFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNV 120
           L P SA+ETNFVSYFAPDF+KEGHDQYVYRHANGLCVIGLA TH+AFKDSGGVT VDFNV
Sbjct: 61  LAPPSAVETNFVSYFAPDFIKEGHDQYVYRHANGLCVIGLAATHIAFKDSGGVTAVDFNV 120

Query: 121 GKSDRSSFKVTGKRKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPEL 180
           GKSDRSSFKVTGKRKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRL+KQPEL
Sbjct: 121 GKSDRSSFKVTGKRKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLMKQPEL 180

Query: 181 LNTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYKRLREVH 221
           LNTVAHREGYIAIVMPK  DWLKVKESLLSLEEYKRLRE++
Sbjct: 181 LNTVAHREGYIAIVMPKAADWLKVKESLLSLEEYKRLRELN 221

[Close]

BLAST of Lcy12g021620 vs. NCBI nr
Match: XP_023536120.1 (protein Simiate [Cucurbita pepo subsp. pepo])

HSP 1 Score: 381.3 bits (978), Expect = 5.5e-102
Identity = 188/207 (90.82%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 13  VQNSPQPPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLPLEPSSAIETNFVS 72
           VQNSPQPPPLEEQQPQ+P EPLPK SQ+DE DEELRKLL+PDVRDLP  P SA+ETNFVS
Sbjct: 48  VQNSPQPPPLEEQQPQKPPEPLPKSSQDDELDEELRKLLIPDVRDLPFAPPSAVETNFVS 107

Query: 73  YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVGKSDRSSFKVTGK 132
           YFAPDFMKEGHDQYVYRHANGLCVIGLAPTH+AFKDS G+T VDFNVGKSDRSSFKVTGK
Sbjct: 108 YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHIAFKDSSGITAVDFNVGKSDRSSFKVTGK 167

Query: 133 RKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPELLNTVAHREGYIAI 192
           RKKNAQFFEPNSA+CKVCTKDASYIVRCSVKGSLLEVNDRL+KQPELL  VAHREGYIAI
Sbjct: 168 RKKNAQFFEPNSAICKVCTKDASYIVRCSVKGSLLEVNDRLMKQPELLKNVAHREGYIAI 227

Query: 193 VMPKPGDWLKVKESLLSLEEYKRLREV 220
           VMPKPGDW+KVKESLLSLEEYKRLREV
Sbjct: 228 VMPKPGDWVKVKESLLSLEEYKRLREV 254

[Close]

BLAST of Lcy12g021620 vs. NCBI nr
Match: XP_022142526.1 (protein Simiate [Momordica charantia])

HSP 1 Score: 380.2 bits (975), Expect = 1.2e-101
Identity = 190/219 (86.76%), Postives = 203/219 (92.69%), Query Frame = 0


Query: 1   MEREETNDVPIAVQNSPQPPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLPL 60
           ME   T+DV   V+N+PQP P EEQQ QQPA+PLP+PSQEDEQDEELR+LLVPDVRDLPL
Sbjct: 1   MEHGGTDDVQTTVRNTPQPQPPEEQQQQQPAQPLPRPSQEDEQDEELRRLLVPDVRDLPL 60

Query: 61  EPSSAIETNFVSYFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVG 120
            P SA++TNFVSYF PDFMK+GHDQYVYRHANGLCVIGLA TH+AFKDSGG+T VDFNVG
Sbjct: 61  SPPSAVDTNFVSYFVPDFMKQGHDQYVYRHANGLCVIGLASTHIAFKDSGGITAVDFNVG 120

Query: 121 KSDRSSFKVTGKRKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPELL 180
           KSDRSSFKVTGKRKKNAQFFEPNSALCKV TKDASYIVRCSVKGSLLEVNDRL+KQPELL
Sbjct: 121 KSDRSSFKVTGKRKKNAQFFEPNSALCKVVTKDASYIVRCSVKGSLLEVNDRLMKQPELL 180

Query: 181 NTVAHREGYIAIVMPKPGDWLKVKESLLSLEEYKRLREV 220
           NTVAHREGYIAIVMPKP DWLKVKESLLSLEEYKRLRE+
Sbjct: 181 NTVAHREGYIAIVMPKPADWLKVKESLLSLEEYKRLREM 219

[Close]

BLAST of Lcy12g021620 vs. NCBI nr
Match: XP_022936746.1 (protein Simiate [Cucurbita moschata] >KAG6591255.1 Protein Abitram, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379.0 bits (972), Expect = 2.7e-101
Identity = 187/207 (90.34%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 13  VQNSPQPPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLPLEPSSAIETNFVS 72
           VQNSPQPPPLEEQQPQ+P EPLPK SQ+DE DEELRKLL+PDVRDLP  P SA+ETNFVS
Sbjct: 2   VQNSPQPPPLEEQQPQKPPEPLPKSSQDDELDEELRKLLIPDVRDLPFAPPSAVETNFVS 61

Query: 73  YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVGKSDRSSFKVTGK 132
           YFAPDFMKEGHDQYVYRHANGLCVIGLAPTH+AFKDS G+T VDFNVGKSDRSSFKVTGK
Sbjct: 62  YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHIAFKDSSGITAVDFNVGKSDRSSFKVTGK 121

Query: 133 RKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPELLNTVAHREGYIAI 192
           RKKNAQFFEPNSA+CKVCTKDASYIVRCSVKGSLLEVNDRL+KQPELL  VAHREGYIAI
Sbjct: 122 RKKNAQFFEPNSAICKVCTKDASYIVRCSVKGSLLEVNDRLMKQPELLKNVAHREGYIAI 181

Query: 193 VMPKPGDWLKVKESLLSLEEYKRLREV 220
           VMPKP DW+KVKESLLSLEEYKRLREV
Sbjct: 182 VMPKPADWVKVKESLLSLEEYKRLREV 208

[Close]

BLAST of Lcy12g021620 vs. NCBI nr
Match: XP_022975830.1 (protein Simiate [Cucurbita maxima])

HSP 1 Score: 372.5 bits (955), Expect = 2.6e-99
Identity = 185/207 (89.37%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 13  VQNSPQPPPLEEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLPLEPSSAIETNFVS 72
           V NSPQPPPLEEQQPQ+P EPLPK SQ+DE DEELRKLL+PDVRDLP  P SA+ETNFVS
Sbjct: 2   VLNSPQPPPLEEQQPQKPPEPLPKFSQDDELDEELRKLLIPDVRDLPFAPPSAVETNFVS 61

Query: 73  YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVGKSDRSSFKVTGK 132
           YFAPDFMKEGHDQYVYRHANGLCVIGLAPTH+AFKDS G+T VDFNVGKSDRSSFKVTGK
Sbjct: 62  YFAPDFMKEGHDQYVYRHANGLCVIGLAPTHIAFKDSSGITAVDFNVGKSDRSSFKVTGK 121

Query: 133 RKKNAQFFEPNSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPELLNTVAHREGYIAI 192
           RKKNAQFFEPNSA+CKVCTKDASYIVRCSVKGSLLEVNDRL+KQPELL  VAHREGYIAI
Sbjct: 122 RKKNAQFFEPNSAICKVCTKDASYIVRCSVKGSLLEVNDRLMKQPELLKNVAHREGYIAI 181

Query: 193 VMPKPGDWLKVKESLLSLEEYKRLREV 220
           VMPKP DW+KVKESLLSLE YKRLREV
Sbjct: 182 VMPKPADWVKVKESLLSLEGYKRLREV 208

[Close]

BLAST of Lcy12g021620 vs. TAIR 10
Match: AT1G75980.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 268.5 bits (685), Expect = 4.9e-72
Identity = 133/197 (67.51%), Postives = 160/197 (81.22%), Query Frame = 0


Query: 23  EEQQPQQPAEPLPKPSQEDEQDEELRKLLVPDVRDLPLEPSSAIETNFVSYFAPDFMKEG 82
           ++QQ QQ A      +QEDE+++ELRKLL+ D+ +LP+ P SA + NFVSYF  DF K G
Sbjct: 33  DDQQKQQLA------TQEDEEEDELRKLLLSDIGELPISPPSATQVNFVSYFITDFTKSG 92

Query: 83  HDQYVYRHANGLCVIGLAPTHVAFKDSGGVTTVDFNVGKSDRSSFKVTGKRKKNAQFFEP 142
           HDQY+YRHANGLCVIGLAPTH+AFKD GG+T+VDFNVGKSDRS  KV+GKRKKNA   E 
Sbjct: 93  HDQYIYRHANGLCVIGLAPTHIAFKDEGGITSVDFNVGKSDRSVLKVSGKRKKNALRSES 152

Query: 143 NSALCKVCTKDASYIVRCSVKGSLLEVNDRLLKQPELLNTVAHREGYIAIVMPKPGDWLK 202
           N+ALCKV T   +YIVRC VKGSLLEVN+RL+KQPELLN+ A REGYIAI+MP+P DW K
Sbjct: 153 NTALCKVSTAKDTYIVRCCVKGSLLEVNERLIKQPELLNSTADREGYIAIIMPRPADWTK 212

Query: 203 VKESLLSLEEYKRLREV 220
            KESL++LEEYK  +E+
Sbjct: 213 NKESLITLEEYKEKKEM 223

The following BLAST results are available for this feature:

BLAST of Lcy12g021620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q28G67	5.5e-20	33.75	Protein Abitram OS=Xenopus tropicalis OX=8364 GN=abitram PE=2 SV=1	[more]
Q80ZQ9	2.7e-19	33.52	Protein Abitram OS=Mus musculus OX=10090 GN=Abitram PE=1 SV=2	[more]
Q29S16	7.9e-19	33.53	Protein Abitram OS=Bos taurus OX=9913 GN=ABITRAM PE=2 SV=1	[more]
Q1LU93	1.0e-18	32.05	Protein Abitram OS=Danio rerio OX=7955 GN=abitram PE=2 SV=1	[more]
Q6GR35	1.4e-18	31.43	Protein Abitram OS=Xenopus laevis OX=8355 GN=abitram PE=2 SV=1	[more]

BLAST of Lcy12g021620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CMG0	5.9e-102	86.76	Actin-binding transcription modulator OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1F8C5	1.3e-101	90.34	protein Simiate OS=Cucurbita moschata OX=3662 GN=LOC111443247 PE=4 SV=1	[more]
A0A6J1IHU0	1.2e-99	89.37	protein Simiate OS=Cucurbita maxima OX=3661 GN=LOC111476416 PE=4 SV=1	[more]
A0A0A0LDM0	2.9e-96	85.20	Actin-binding transcription modulator OS=Cucumis sativus OX=3659 GN=Csa_3G874330...	[more]
A0A1S4E5T9	3.7e-96	84.75	Actin-binding transcription modulator OS=Cucumis melo OX=3656 GN=LOC103503860 PE...	[more]

BLAST of Lcy12g021620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896120.1	4.2e-102	88.24	protein Abitram [Benincasa hispida] >XP_038896121.1 protein Abitram [Benincasa h...	[more]
XP_023536120.1	5.5e-102	90.82	protein Simiate [Cucurbita pepo subsp. pepo]	[more]
XP_022142526.1	1.2e-101	86.76	protein Simiate [Momordica charantia]	[more]
XP_022936746.1	2.7e-101	90.34	protein Simiate [Cucurbita moschata] >KAG6591255.1 Protein Abitram, partial [Cuc...	[more]
XP_022975830.1	2.6e-99	89.37	protein Simiate [Cucurbita maxima]	[more]

BLAST of Lcy12g021620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75980.1	4.9e-72	67.51	Single hybrid motif superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033753	Glycine cleavage system H-protein/Simiate	PFAM	PF01597	GCV_H	coord: 152..216 e-value: 3.9E-5 score: 23.5
None	No IPR available	GENE3D	2.40.50.100		coord: 77..218 e-value: 2.5E-14 score: 55.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
IPR039169	Protein Abitram	PANTHER	PTHR13651	UNCHARACTERIZED	coord: 36..218
IPR011053	Single hybrid motif	SUPERFAMILY	51230	Single hybrid motif	coord: 77..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g021620.1	Lcy12g021620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus