Lcy12g021350 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g021350
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	WEB family protein
Location	Chr12: 48411412 .. 48411992 (+)
RNA-Seq Expression	Lcy12g021350
Synteny	Lcy12g021350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATATCTATACAAATCTATGTTTATATAAATCACCAAACCACACCCATTATAGCATTCCAGTTCCCGGAGGCCCTCTCTCCTCAGAGAATCATTTTCACACAATATGCAAAGGCCTAAAACCACTGAAGTTCTAGTTGCTGCAGCTTCTTCCAAATCTCTCAACTTCTCTTCCATGAAGCTCTTTCATCGAATCCGTAAGATACTCATGCGGTTCGTGTTCTCGTTCCCGTCTCGAGTGTCGTCGTCGAGACGAAGAACAAGCTGTGACAAGTCGTTTGATCCACCGAAGACGTCATGCAGCTCATACTACTCTTCCCACTCCCATTACGATGAGGCCATTGCCGATTGTATCGAGTTCTTCAACAAGTCGTCTCAAGATGGAGTCTTTGAAGCTCAAAAACCCAACACCTTGGTATGATATGTTGAGAATACGAGTAATGTCACAAGTCGAGTGGACAATTTCAAATTGAAATATGAAGAGATCTGTTTGTTATATTGTTTGAGAAATTAAAACTTGGTTTGCCATTCATTTTTATGTATCTTTTTTGTTGTATTCATTTGTTTTAAGCGTGTTTCTG

mRNA sequence

CAAATATCTATACAAATCTATGTTTATATAAATCACCAAACCACACCCATTATAGCATTCCAGTTCCCGGAGGCCCTCTCTCCTCAGAGAATCATTTTCACACAATATGCAAAGGCCTAAAACCACTGAAGTTCTAGTTGCTGCAGCTTCTTCCAAATCTCTCAACTTCTCTTCCATGAAGCTCTTTCATCGAATCCGTAAGATACTCATGCGGTTCGTGTTCTCGTTCCCGTCTCGAGTGTCGTCGTCGAGACGAAGAACAAGCTGTGACAAGTCGTTTGATCCACCGAAGACGTCATGCAGCTCATACTACTCTTCCCACTCCCATTACGATGAGGCCATTGCCGATTGTATCGAGTTCTTCAACAAGTCGTCTCAAGATGGAGTCTTTGAAGCTCAAAAACCCAACACCTTGGTATGATATGTTGAGAATACGAGTAATGTCACAAGTCGAGTGGACAATTTCAAATTGAAATATGAAGAGATCTGTTTGTTATATTGTTTGAGAAATTAAAACTTGGTTTGCCATTCATTTTTATGTATCTTTTTTGTTGTATTCATTTGTTTTAAGCGTGTTTCTG

Coding sequence (CDS)

ATGCAAAGGCCTAAAACCACTGAAGTTCTAGTTGCTGCAGCTTCTTCCAAATCTCTCAACTTCTCTTCCATGAAGCTCTTTCATCGAATCCGTAAGATACTCATGCGGTTCGTGTTCTCGTTCCCGTCTCGAGTGTCGTCGTCGAGACGAAGAACAAGCTGTGACAAGTCGTTTGATCCACCGAAGACGTCATGCAGCTCATACTACTCTTCCCACTCCCATTACGATGAGGCCATTGCCGATTGTATCGAGTTCTTCAACAAGTCGTCTCAAGATGGAGTCTTTGAAGCTCAAAAACCCAACACCTTGGTATGA

Protein sequence

MQRPKTTEVLVAAASSKSLNFSSMKLFHRIRKILMRFVFSFPSRVSSSRRRTSCDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNTLV

Homology

[Close]

BLAST of Lcy12g021350 vs. ExPASy TrEMBL
Match: A0A0A0LDK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872120 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 86/108 (79.63%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MQRPKTTEVLVAA-----ASSKSLNFSSMKLFHRIRKILMRFVFSFPSRV-SSSRRRTSC 60
           MQRPKT+  L+ A     +SS SLNFSSMKLF RIRK+L+RFVFS PSRV SSSRRRTS 
Sbjct: 1   MQRPKTSAALITAVSSSSSSSNSLNFSSMKLFQRIRKMLVRFVFSIPSRVSSSSRRRTSY 60

Query: 61  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNT 103
           DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQD  FE QKP T
Sbjct: 61  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDRGFEDQKPIT 108

[Close]

BLAST of Lcy12g021350 vs. ExPASy TrEMBL
Match: A0A6J1ADC8 (uncharacterized protein LOC110417084 OS=Herrania umbratica OX=108875 GN=LOC110417084 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-24
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 12  AAASSKSLNFSSMKLFHRIRKILMRFVFSFPSRVSS-----SRRRTSCDKSFDPPKTSCS 71
           A+  S  LNFS+MKLF+R RKILMR +FS PS  SS     + ++T+CD+ FDPPKTSCS
Sbjct: 29  ASTLSPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAAKQTNCDR-FDPPKTSCS 88

Query: 72  SYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNTLV 105
           SYYSSHSHY EAIADCIEFFNKSSQ+G+ + +K + LV
Sbjct: 89  SYYSSHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 125

[Close]

BLAST of Lcy12g021350 vs. ExPASy TrEMBL
Match: A0A061FD82 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034216 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.8e-24
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 12  AAASSKSLNFSSMKLFHRIRKILMRFVFSFPSRVSS-----SRRRTSCDKSFDPPKTSCS 71
           A+  S  LNFS+MKLF+R RKILMR +FS PS  SS     + ++T+CD+ FDPPKTSCS
Sbjct: 56  ASTLSPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAPKQTNCDR-FDPPKTSCS 115

Query: 72  SYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNTLV 105
           SYYSSHSHY EAIADCIEFFNKSSQ+G+ + +K + LV
Sbjct: 116 SYYSSHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 152

[Close]

BLAST of Lcy12g021350 vs. ExPASy TrEMBL
Match: A0A6P9EMF7 (uncharacterized protein LOC109019991 OS=Juglans regia OX=51240 GN=LOC109019991 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 15  SSKSLNFSSMKLFHRIRKILMRFVFSFPSRVSSS----------RRRTSCDKSFDPPKTS 74
           S K +NFS+MKLF+R RKILMR +FS PS  SSS           R+ SCD+ F+PPKTS
Sbjct: 36  SPKLINFSAMKLFNRFRKILMRLLFSLPSPGSSSSSAPTSGSSASRQKSCDR-FEPPKTS 95

Query: 75  CSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNTLV 105
           CSSYYSSHSHY+EAIADCIEFFNKSSQDG+ + +K + +V
Sbjct: 96  CSSYYSSHSHYNEAIADCIEFFNKSSQDGILDGRKSDVMV 134

[Close]

BLAST of Lcy12g021350 vs. ExPASy TrEMBL
Match: A0A067KLC1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08223 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.4e-23
Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 12  AAASSKSLNFSSMKLFHRIRKILMRFVFSFPS--RVSSSRRRTSCDKSFDPPKTSCSSYY 71
           +  SS   +FS+MK+F+R RKILMR +FSFPS     SS ++ +C + FDPPKTSCSSYY
Sbjct: 48  SGVSSDKFSFSAMKIFNRFRKILMRLLFSFPSHHHHGSSSKQRNCSERFDPPKTSCSSYY 107

Query: 72  SSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNTLV 105
           SSHSHY EAIADCIEF NKSSQ+GV + +K + LV
Sbjct: 108 SSHSHYSEAIADCIEFLNKSSQEGVLDGRKSDVLV 142

[Close]

BLAST of Lcy12g021350 vs. NCBI nr
Match: KGN60030.1 (hypothetical protein Csa_001336 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-34
Identity = 86/108 (79.63%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MQRPKTTEVLVAA-----ASSKSLNFSSMKLFHRIRKILMRFVFSFPSRV-SSSRRRTSC 60
           MQRPKT+  L+ A     +SS SLNFSSMKLF RIRK+L+RFVFS PSRV SSSRRRTS 
Sbjct: 1   MQRPKTSAALITAVSSSSSSSNSLNFSSMKLFQRIRKMLVRFVFSIPSRVSSSSRRRTSY 60

Query: 61  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNT 103
           DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQD  FE QKP T
Sbjct: 61  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDRGFEDQKPIT 108

[Close]

BLAST of Lcy12g021350 vs. NCBI nr
Match: KAG7024157.1 (hypothetical protein SDJN02_12970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-24
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 24  MKLFHRIRKILMRFVFSFPSRVSSSRRRTSCDKSFDPPKTSCSSYYSSHSHYDEAIADCI 83
           MKLFHRIRKIL+RFVFS PSRV SSR+RT+ DK +DPPKTSCSSYYSSHSHYDEAIADCI
Sbjct: 1   MKLFHRIRKILVRFVFSLPSRV-SSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCI 60

Query: 84  EFFNKSSQDGVFEAQKPNTLV 105
           EFFNKSSQD       PNTLV
Sbjct: 61  EFFNKSSQD-------PNTLV 73

[Close]

BLAST of Lcy12g021350 vs. NCBI nr
Match: XP_021284958.1 (uncharacterized protein LOC110417084 [Herrania umbratica])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 12  AAASSKSLNFSSMKLFHRIRKILMRFVFSFPSRVSS-----SRRRTSCDKSFDPPKTSCS 71
           A+  S  LNFS+MKLF+R RKILMR +FS PS  SS     + ++T+CD+ FDPPKTSCS
Sbjct: 29  ASTLSPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAAKQTNCDR-FDPPKTSCS 88

Query: 72  SYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNTLV 105
           SYYSSHSHY EAIADCIEFFNKSSQ+G+ + +K + LV
Sbjct: 89  SYYSSHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 125

[Close]

BLAST of Lcy12g021350 vs. NCBI nr
Match: XP_007017791.2 (PREDICTED: uncharacterized protein LOC18591544 [Theobroma cacao])

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-23
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 12  AAASSKSLNFSSMKLFHRIRKILMRFVFSFPSRVSS-----SRRRTSCDKSFDPPKTSCS 71
           A+  S  LNFS+MKLF+R RKILMR +FS PS  SS     + ++T+CD+ FDPPKTSCS
Sbjct: 29  ASTLSPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAPKQTNCDR-FDPPKTSCS 88

Query: 72  SYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNTLV 105
           SYYSSHSHY EAIADCIEFFNKSSQ+G+ + +K + LV
Sbjct: 89  SYYSSHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 125

[Close]

BLAST of Lcy12g021350 vs. NCBI nr
Match: EOY15016.1 (Uncharacterized protein TCM_034216 [Theobroma cacao])

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-23
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 12  AAASSKSLNFSSMKLFHRIRKILMRFVFSFPSRVSS-----SRRRTSCDKSFDPPKTSCS 71
           A+  S  LNFS+MKLF+R RKILMR +FS PS  SS     + ++T+CD+ FDPPKTSCS
Sbjct: 56  ASTLSPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAPKQTNCDR-FDPPKTSCS 115

Query: 72  SYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPNTLV 105
           SYYSSHSHY EAIADCIEFFNKSSQ+G+ + +K + LV
Sbjct: 116 SYYSSHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 152

[Close]

BLAST of Lcy12g021350 vs. TAIR 10
Match: AT1G75717.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 6.3e-14
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 24 MKLFHRIRKILMRFVFSFPSRVSSSRRRTSCDKS-----FDPPKTSC-SSYYSSHSHYDE 83
          MKLFH++ KILMR +  F    SS R++ +  +S     F+PPK SC SSYYSSH HY E
Sbjct: 1  MKLFHKLGKILMRLI-DFTLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHYSE 60

Query: 84 AIADCIEFFNKSS 91
          AIADCIEFFNKSS
Sbjct: 61 AIADCIEFFNKSS 72

The following BLAST results are available for this feature:

BLAST of Lcy12g021350 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g021350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDK4	1.5e-34	79.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872120 PE=4 SV=1	[more]
A0A6J1ADC8	5.2e-24	64.29	uncharacterized protein LOC110417084 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A061FD82	6.8e-24	64.29	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034216 PE=4 SV=1	[more]
A0A6P9EMF7	2.6e-23	63.00	uncharacterized protein LOC109019991 OS=Juglans regia OX=51240 GN=LOC109019991 P...	[more]
A0A067KLC1	4.4e-23	62.11	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08223 PE=4 SV=1	[more]

BLAST of Lcy12g021350 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60030.1	3.0e-34	79.63	hypothetical protein Csa_001336 [Cucumis sativus]	[more]
KAG7024157.1	2.2e-24	81.48	hypothetical protein SDJN02_12970, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_021284958.1	1.1e-23	64.29	uncharacterized protein LOC110417084 [Herrania umbratica]	[more]
XP_007017791.2	1.4e-23	64.29	PREDICTED: uncharacterized protein LOC18591544 [Theobroma cacao]	[more]
EOY15016.1	1.4e-23	64.29	Uncharacterized protein TCM_034216 [Theobroma cacao]	[more]

BLAST of Lcy12g021350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75717.1	6.3e-14	60.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 12..102
None	No IPR available	PANTHER	PTHR35111:SF5	F10A5.9	coord: 12..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g021350.1	Lcy12g021350.1	mRNA