Lcy12g019940 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g019940
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Parvalbumin
Location	Chr12: 47165641 .. 47166629 (+)
RNA-Seq Expression	Lcy12g019940
Synteny	Lcy12g019940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGCATTGACTAATTTTATCATTAAGCTCAAACAGTACGCACCTTTAATCGAACGCAGACGACAGTTCCCAAATTGGACGACACTGAAAGGCCGAATTCGATTCCATTTTTCGGCGACCGAATCAGAAAAGCCACACCAATCCGATGGAGAAGACACAAGATAACTCCGCATCTAAATTCTAATCGAGCCATCGATCATGGCGGTTCTTAGGGCTCAAGCCGCCGCCATCAGTCGTCAATTTCTATATAAATTCCCCTGATCTCCTTCACTTCAATCGCCAAGAAATTAAATCAAATCAAATCACACAGTCGATTACAGAACGATGTCGTCGCACGGTCGAAAATTGAAGTCGAAGCCGAGGGCGGCCGTCTCGTCGGAGAACTGCTACTCGGCGAAGGAACTGAAAGAGATCTTTAGGCAGATGGATACGAATGAAGACGGCGGATTGGGATTGTTCGAGATCAAGGACGCGCTGAAGCGACTCGACGCTGAATTGCCGGTTCATCTTGCTTTCAAGGCGCTCTGTCACGCCGATCAAAACAGAGATGGAAAGCTTGGCGAGGAGGAGATCGATCAGTTCGTCAAGTTCTTGATGAGCGAAGGTTATGTTGTGTGATTTAAGTGCGCCGCCGCCTCCGACATCGGCTCTCTGATCTCTGTCGGTCGTTGATCGTCGGTTTCCAAAAATTAAACTTATCAAATAAATGGCGGCTGCGTGTGTTATTGACTTATTATGATGAATTTATTACAGGACGTGTATTGTATTGTATTTGAATTTGTATTTGTATATGTATATGTTGTTTCTTTTGAATTCTCAATTCTATAGTTCAACTGAGATAAAATTTGTATTAATCACCTAGCGGTTTATGGTTCGAATTCCTCATCTTACATGTTGTTACAAGAAACCTACATTTTGATACGGTAAGGTTGAAATTCATCCTCCACTTCCATAATTGTTATAATTAATGCGTTATTTCATGTCCAAAC

mRNA sequence

AATGCATTGACTAATTTTATCATTAAGCTCAAACAGTACGCACCTTTAATCGAACGCAGACGACAGTTCCCAAATTGGACGACACTGAAAGGCCGAATTCGATTCCATTTTTCGGCGACCGAATCAGAAAAGCCACACCAATCCGATGGAGAAGACACAAGATAACTCCGCATCTAAATTCTAATCGAGCCATCGATCATGGCGGTTCTTAGGGCTCAAGCCGCCGCCATCAGTCGTCAATTTCTATATAAATTCCCCTGATCTCCTTCACTTCAATCGCCAAGAAATTAAATCAAATCAAATCACACAGTCGATTACAGAACGATGTCGTCGCACGGTCGAAAATTGAAGTCGAAGCCGAGGGCGGCCGTCTCGTCGGAGAACTGCTACTCGGCGAAGGAACTGAAAGAGATCTTTAGGCAGATGGATACGAATGAAGACGGCGGATTGGGATTGTTCGAGATCAAGGACGCGCTGAAGCGACTCGACGCTGAATTGCCGGTTCATCTTGCTTTCAAGGCGCTCTGTCACGCCGATCAAAACAGAGATGGAAAGCTTGGCGAGGAGGAGATCGATCAGTTCGTCAAGTTCTTGATGAGCGAAGGTTATGTTGTGTGATTTAAGTGCGCCGCCGCCTCCGACATCGGCTCTCTGATCTCTGTCGGTCGTTGATCGTCGGTTTCCAAAAATTAAACTTATCAAATAAATGGCGGCTGCGTGTGTTATTGACTTATTATGATGAATTTATTACAGGACGTGTATTGTATTGTATTTGAATTTGTATTTGTATATGTATATGTTGTTTCTTTTGAATTCTCAATTCTATAGTTCAACTGAGATAAAATTTGTATTAATCACCTAGCGGTTTATGGTTCGAATTCCTCATCTTACATGTTGTTACAAGAAACCTACATTTTGATACGGTAAGGTTGAAATTCATCCTCCACTTCCATAATTGTTATAATTAATGCGTTATTTCATGTCCAAAC

Coding sequence (CDS)

ATGTCGTCGCACGGTCGAAAATTGAAGTCGAAGCCGAGGGCGGCCGTCTCGTCGGAGAACTGCTACTCGGCGAAGGAACTGAAAGAGATCTTTAGGCAGATGGATACGAATGAAGACGGCGGATTGGGATTGTTCGAGATCAAGGACGCGCTGAAGCGACTCGACGCTGAATTGCCGGTTCATCTTGCTTTCAAGGCGCTCTGTCACGCCGATCAAAACAGAGATGGAAAGCTTGGCGAGGAGGAGATCGATCAGTTCGTCAAGTTCTTGATGAGCGAAGGTTATGTTGTGTGA

Protein sequence

MSSHGRKLKSKPRAAVSSENCYSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPVHLAFKALCHADQNRDGKLGEEEIDQFVKFLMSEGYVV

Homology

[Close]

BLAST of Lcy12g019940 vs. ExPASy Swiss-Prot
Match: Q32NH8 (1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 OS=Xenopus laevis OX=8355 GN=plcd4 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.1e-04
Identity = 22/67 (32.84%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 31  FRQMDTNEDGGLGLFEIKDALKRLDAELPVHLAFKALCHADQNRDGKLGEEEIDQFVKFL 90
           F++ D N+DG +   E++D LK ++ ++  H AF+    AD++  G L  EE   F K L
Sbjct: 143 FQKADKNKDGRMNFKEVQDLLKMMNVDMSEHHAFRLFQMADKSESGTLEGEEFVLFYKAL 202

Query: 91  MSEGYVV 98
                V+
Sbjct: 203 TQRDEVL 209

[Close]

BLAST of Lcy12g019940 vs. ExPASy TrEMBL
Match: A0A0A0L3J7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.7e-32
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MSSHGRKLKSKPRAAVSSENCYSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPV 60
          MSS  R         VSSE+ YSAKEL++IF QMDTNEDGGLGLFEIK+ALK+LDAE+PV
Sbjct: 1  MSSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPV 60

Query: 61 HLAFKALCHADQNRDGKLGEEEIDQFVKFLMSEGYVV 98
          HLA+ ALCHAD+NRDGKLGEEEIDQFVK++MS+GYVV
Sbjct: 61 HLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

[Close]

BLAST of Lcy12g019940 vs. ExPASy TrEMBL
Match: A0A5D3D9N2 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003460 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.9e-32
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 8  LKSKPRAAVSSENCYSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPVHLAFKAL 67
          +KS  R AVSSE+ YSAKEL++IF QMDTNEDGGLGLFEIK+ALK+LDAE+PVHLA+ AL
Sbjct: 1  MKSNSR-AVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSAL 60

Query: 68 CHADQNRDGKLGEEEIDQFVKFLMSEGYVV 98
          C+AD+NRDGKLGEEEIDQFVK++MS+GYVV
Sbjct: 61 CYADRNRDGKLGEEEIDQFVKYMMSKGYVV 89

[Close]

BLAST of Lcy12g019940 vs. ExPASy TrEMBL
Match: W9S022 (Putative calcium-binding protein CML10 OS=Morus notabilis OX=981085 GN=L484_000100 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 22  YSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPVHLAFKALCHADQNRDGKLGEE 81
           Y  ++LK + R+ DT+ DG L   E+K A K L A  P   A +ALCHAD+NRDG + EE
Sbjct: 25  YDKEKLKSVIRRYDTDGDGNLSRKELKKAFKELGATAPGWRAIRALCHADKNRDGFISEE 84

Query: 82  EIDQFVKFLMSEGYVV 98
           E+   V +    GYV+
Sbjct: 85  ELANLVHYAAQRGYVL 100

[Close]

BLAST of Lcy12g019940 vs. ExPASy TrEMBL
Match: A0A5N6RQD5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018542 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 4   HGRKLKSKPRAAVSSENCYSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPVHLA 63
           H  K+K+ P         Y+  +L  +FR+ D N DG L   E+++A   L +  P   A
Sbjct: 17  HKAKIKTVPMP-------YTEAQLMGMFRRFDANGDGHLSRQELRNAFSTLGSSAPGWRA 76

Query: 64  FKALCHADQNRDGKLGEEEIDQFVKFLMSEGYVV 98
           F+ALCHAD+N DG + E E+D  V++ +  GY +
Sbjct: 77  FRALCHADKNGDGYISEAELDNLVRYALKHGYTI 103

[Close]

BLAST of Lcy12g019940 vs. ExPASy TrEMBL
Match: A0A5C7H618 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021566 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 22  YSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPVHLAFKALCHADQNRDGKLGEE 81
           Y+ K+L  IFR+ DT+ DG L   E+ DA   L +  P + A++AL HAD N+DG + E 
Sbjct: 108 YNEKQLHGIFRRFDTDHDGRLSQQELTDAFHSLGSRFPAYRAWRALHHADANKDGFVSEN 167

Query: 82  EIDQFVKFLMSEGYVV 98
           E  Q VK+ +  G+++
Sbjct: 168 EFQQLVKYAVKHGFLL 183

[Close]

BLAST of Lcy12g019940 vs. NCBI nr
Match: KAG7037807.1 (hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 4.5e-32
Identity = 73/97 (75.26%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1   MSSHGRKLKSKPRAAVSSENCYSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPV 60
           MSS+GRK K+    A  SE+ YSAKEL+EIF QMDTNEDGGLGLFEIK+ALK+LDAE PV
Sbjct: 41  MSSYGRKSKA---VAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPV 100

Query: 61  HLAFKALCHADQNRDGKLGEEEIDQFVKFLMSEGYVV 98
           HLAFKALC +D+NRDGKLG +EID+F+K+LMSEGYVV
Sbjct: 101 HLAFKALCQSDRNRDGKLGRDEIDKFIKYLMSEGYVV 134

[Close]

BLAST of Lcy12g019940 vs. NCBI nr
Match: KAG6608479.1 (hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.9 bits (372), Expect = 4.5e-32
Identity = 73/97 (75.26%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1   MSSHGRKLKSKPRAAVSSENCYSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPV 60
           MSS+GRK K+    A  SE+ YSAKEL+EIF QMDTNEDGGLGLFEIK+ALK+LDAE PV
Sbjct: 41  MSSYGRKSKA---VAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPV 100

Query: 61  HLAFKALCHADQNRDGKLGEEEIDQFVKFLMSEGYVV 98
           HLAFKALC +D+NRDGKLG +EID+F+K+LMSEGYVV
Sbjct: 101 HLAFKALCQSDRNRDGKLGRDEIDKFIKYLMSEGYVV 134

[Close]

BLAST of Lcy12g019940 vs. NCBI nr
Match: KGN55187.1 (hypothetical protein Csa_012728 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 7.7e-32
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MSSHGRKLKSKPRAAVSSENCYSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPV 60
          MSS  R         VSSE+ YSAKEL++IF QMDTNEDGGLGLFEIK+ALK+LDAE+PV
Sbjct: 1  MSSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPV 60

Query: 61 HLAFKALCHADQNRDGKLGEEEIDQFVKFLMSEGYVV 98
          HLA+ ALCHAD+NRDGKLGEEEIDQFVK++MS+GYVV
Sbjct: 61 HLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

[Close]

BLAST of Lcy12g019940 vs. NCBI nr
Match: KAA0064378.1 (putative calcium-binding protein CML10 [Cucumis melo var. makuwa] >TYK20209.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 8  LKSKPRAAVSSENCYSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPVHLAFKAL 67
          +KS  R AVSSE+ YSAKEL++IF QMDTNEDGGLGLFEIK+ALK+LDAE+PVHLA+ AL
Sbjct: 1  MKSNSR-AVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSAL 60

Query: 68 CHADQNRDGKLGEEEIDQFVKFLMSEGYVV 98
          C+AD+NRDGKLGEEEIDQFVK++MS+GYVV
Sbjct: 61 CYADRNRDGKLGEEEIDQFVKYMMSKGYVV 89

[Close]

BLAST of Lcy12g019940 vs. NCBI nr
Match: KAG7024250.1 (hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.4 bits (355), Expect = 4.2e-30
Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 13 RAAVSSENCYSAKELKEIFRQMDTNEDGGLGLFEIKDALKRLDAELPVHLAFKALCHADQ 72
          R  ++S++ YS KELKEIF QMDTNEDGGLGLFEIK+ALK+LDAE P+HLA+KALCHAD+
Sbjct: 5  RPKLNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADR 64

Query: 73 NRDGKLGEEEIDQFVKFLMSEGYVV 98
          N DGKLGEEEID+FVK+++SEGYVV
Sbjct: 65 NIDGKLGEEEIDEFVKYMLSEGYVV 89

The following BLAST results are available for this feature:

BLAST of Lcy12g019940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32NH8	7.1e-04	32.84	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 OS=Xenopus lae...	[more]

BLAST of Lcy12g019940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3J7	3.7e-32	74.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1	[more]
A0A5D3D9N2	4.9e-32	78.89	Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
W9S022	1.2e-09	44.74	Putative calcium-binding protein CML10 OS=Morus notabilis OX=981085 GN=L484_0001...	[more]
A0A5N6RQD5	1.3e-08	36.17	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018542 PE=4 SV=1	[more]
A0A5C7H618	1.7e-08	40.79	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021566 PE=4 SV=1	[more]

BLAST of Lcy12g019940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037807.1	4.5e-32	75.26	hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6608479.1	4.5e-32	75.26	hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN55187.1	7.7e-32	74.23	hypothetical protein Csa_012728 [Cucumis sativus]	[more]
KAA0064378.1	1.0e-31	78.89	putative calcium-binding protein CML10 [Cucumis melo var. makuwa] >TYK20209.1 pu...	[more]
KAG7024250.1	4.2e-30	76.47	hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lcy12g019940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 62..90 e-value: 8.6 score: 10.2 coord: 26..54 e-value: 0.0098 score: 25.1
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 58..93 score: 9.073802
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 22..57 score: 12.281773
None	No IPR available	GENE3D	1.10.238.10		coord: 3..95 e-value: 2.3E-11 score: 45.6
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 71..83
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 24..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g019940.1	Lcy12g019940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding