Lcy12g019270 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g019270
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Agamous-like MADS-box protein
Location	Chr12: 46683656 .. 46685256 (+)
RNA-Seq Expression	Lcy12g019270
Synteny	Lcy12g019270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGAGTGAAGCTTCCAATCAAGAAGATTGAGGACGTTTCCAGTCGTGGAGTCACTTTCTGCAAAAGGAAAAAGAGACTCATCAAGAATGCTTACGAATTATCTGTTCTCTGTGACATTGATATTGCTCTCATCATTCTCTCTCCCACCGGAGAACTCAGCTTTTTCTCTGCAAATTCAAGGTTTTGCCGTTTCTTCAACTTTTAAATTGTTTCAATTTATTAAAAGAAGAAAAAGAACCAAAGATAATCTATATCCACGATTAAAAAAACACACACACACACACACTTCTTTTTCTTTTTAAAAAGTTGTTTTTTGTATGTCCAAGAATCGATGATGTGTTGGATCGATTCGTCAATCTCAGTGTAGATGAACGAGAAAGGTCAGTAGATTTTTGCCCTTTTCTTTCCTTATCTCGGTATTTTTGTAACATATTTTGGGCTAAATTAGCTTTTCTTGTATCTATTTTGGACGGTTTTCAAAAGACTGCGGGATAAAGAGGTAAATATTTGCTCTTGTGTCAACCACGAAAATGCAATTAAACAGTCAGTATACGTTAAAAATGAATTAACACGTTTTGTTGAGCAGTTTCTCATTATGTGCAACGACAAGTCGATGCAAGAAAGCAATCCACCACAACAACACACGTCCAGGTTCTAATTTGTCATTAATCAATTTAATGATTTGGTACTTTCTAACGAACAAATAACAAACAATAATGACAACAATCATATTTATGAACTTAGCTATAGAGTAGTCAATAAAATTATAATGTAACATGCATTATTGTCGACAGAGTGAATCATATTAGTGAAATAGCTTATATTTTTATGTGTTCTATCTATTATAAGTAAATGATATATTTATCTTGTAAAGATATTTTATTTTACAAAAGAATAACTCTACATGTCGAGTTATTGGATGATTATTAATTAAATAATCGCTTTAATGGGTTCATGTGAAGCAGCGGTGGTAGCAATGACTACGAGCAACGCATAAAGGTACACATGAAATCCACTTTCGGCGGTGAGATCGAGAGAGTAGAACTATTTGCTTTGCGATTTTGAGGGTTTTTTTTTTTTTCAAATTATAACTACTGTTGAACACGACGACAGAATATTCAGCATGAAGTTCTCACCAGCAAATCTCAGTTACGGGAGCTAAGGAAAGGGCTTGGGTAACGTGTAAAGCAACAATTGTACTTCAATGTTATCTGTTCAATCTGAAGAAAAATTTGAAGTTATTTCGATTGTAAAATTTGTTTTGTATGGTTCAATTCTAGGGCATTTGAAGGCGTTTTGTCGAAGATCAGAACGATCGGCGAGGCGGAAAATGTGGAGAAAATTCTCGAGGAAACCTTGAGGAAATTGCTTGCGCGCAAGGTTAGTGGTTCTGTTTTTGACTGATTGATCGATCTATTCTACTGCTGTTATGAATTTTGGATAGATGGCTGAATTTTACAGTTTGAGTGATAAATTTTGCAGCAAGTGCTCCAGCGGCAGTGCAATTCCTCTGAACCGTCGGCGGAACTTTTACGCGTACGTAACCCTAACCATCCACAGTTTACGTTTTCAGTATTTCAAAATTTCAGTCAGTGA

mRNA sequence

ATGGGGAGAGTGAAGCTTCCAATCAAGAAGATTGAGGACGTTTCCAGTCGTGGAGTCACTTTCTGCAAAAGGAAAAAGAGACTCATCAAGAATGCTTACGAATTATCTGTTCTCTGTGACATTGATATTGCTCTCATCATTCTCTCTCCCACCGGAGAACTCAGCTTTTTCTCTGCAAATTCAAGCGGTGGTAGCAATGACTACGAGCAACGCATAAAGAATATTCAGCATGAAGTTCTCACCAGCAAATCTCAGTTACGGGAGCTAAGGAAAGGGCTTGGGGCATTTGAAGGCGTTTTGTCGAAGATCAGAACGATCGGCGAGGCGGAAAATGTGGAGAAAATTCTCGAGGAAACCTTGAGGAAATTGCTTGCGCGCAAGCAAGTGCTCCAGCGGCAGTGCAATTCCTCTGAACCGTCGGCGGAACTTTTACGCGTACGTAACCCTAACCATCCACAGTTTACGTTTTCAGTATTTCAAAATTTCAGTCAGTGA

Coding sequence (CDS)

ATGGGGAGAGTGAAGCTTCCAATCAAGAAGATTGAGGACGTTTCCAGTCGTGGAGTCACTTTCTGCAAAAGGAAAAAGAGACTCATCAAGAATGCTTACGAATTATCTGTTCTCTGTGACATTGATATTGCTCTCATCATTCTCTCTCCCACCGGAGAACTCAGCTTTTTCTCTGCAAATTCAAGCGGTGGTAGCAATGACTACGAGCAACGCATAAAGAATATTCAGCATGAAGTTCTCACCAGCAAATCTCAGTTACGGGAGCTAAGGAAAGGGCTTGGGGCATTTGAAGGCGTTTTGTCGAAGATCAGAACGATCGGCGAGGCGGAAAATGTGGAGAAAATTCTCGAGGAAACCTTGAGGAAATTGCTTGCGCGCAAGCAAGTGCTCCAGCGGCAGTGCAATTCCTCTGAACCGTCGGCGGAACTTTTACGCGTACGTAACCCTAACCATCCACAGTTTACGTTTTCAGTATTTCAAAATTTCAGTCAGTGA

Protein sequence

MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSANSSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIRTIGEAENVEKILEETLRKLLARKQVLQRQCNSSEPSAELLRVRNPNHPQFTFSVFQNFSQ

Homology

[Close]

BLAST of Lcy12g019270 vs. ExPASy Swiss-Prot
Match: Q9LM46 (Agamous-like MADS-box protein AGL104 OS=Arabidopsis thaliana OX=3702 GN=AGL104 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
          MGRVKL IK+IE+ ++R VTF KR+  LIK AYELS+LCDIDIALI+ SP+  LS FS  
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFSGK 60

Query: 61 S 62
          +
Sbjct: 61 T 61

[Close]

BLAST of Lcy12g019270 vs. ExPASy Swiss-Prot
Match: Q1PFC2 (Agamous-like MADS-box protein AGL66 OS=Arabidopsis thaliana OX=3702 GN=AGL66 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.8e-14
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 1  MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
          MGRVKL IK+IE+ ++R VTF KR+  LIK AYELS+LCDIDIAL++ SP+  LS FS  
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFSGK 60

Query: 61 SSGGSNDYEQRIKNIQHEVLTSKSQLRE 89
          +         RI+++    +    Q RE
Sbjct: 61 T---------RIEDVFSRYINLSDQERE 79

[Close]

BLAST of Lcy12g019270 vs. ExPASy Swiss-Prot
Match: Q38840 (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana OX=3702 GN=AGL17 PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-13
Identity = 59/166 (35.54%), Postives = 89/166 (53.61%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGR K+ I+KI+D +SR VTF KR+K LIK A EL++LCD ++ LII S T +L  F+++
Sbjct: 1   MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 61  SSGGSND-------YEQRIKN-------IQHEVLTSKSQLRELRKGLGAFEGVLSKIRTI 120
           S   + +        EQ + N        Q E  T + +L  L++      GV     ++
Sbjct: 61  SVKSTIERFNTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSV 120

Query: 121 GEAENVEKILEETLRKL-LARKQVLQRQCNSSEPSAELLRVRNPNH 152
            E +N+E  LE +LR + + R+Q+L  +        EL R RN  H
Sbjct: 121 KELQNIESQLEMSLRGIRMKREQILTNEIK------ELTRKRNLVH 160

[Close]

BLAST of Lcy12g019270 vs. ExPASy Swiss-Prot
Match: F6I457 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGR K+ IK+IE+ ++R VTFCKR+  L+K AYELSVLCD ++ALI+ S  G +  +S N
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYSNN 60

Query: 61  ---------------SSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIRT 120
                          S+ G +  E   +  Q E    + Q++ L+       G      T
Sbjct: 61  NIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLT 120

Query: 121 IGEAENVEKILEETLRKLLARKQVL 131
           + E + +E  LE  + ++ ++K  L
Sbjct: 121 VKELKQLENRLERGITRIRSKKHEL 145

[Close]

BLAST of Lcy12g019270 vs. ExPASy Swiss-Prot
Match: A0A217EJJ0 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGR K+ IK+IE+ ++R VTFCKR+  L+K AYELSVLCD ++ALI+ S  G +  +S N
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYSNN 60

Query: 61  ---------------SSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIRT 120
                          S+ G +  E   +  Q E    + Q++ L+       G      T
Sbjct: 61  NIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLT 120

Query: 121 IGEAENVEKILEETLRKLLARKQVL 131
           + E + +E  LE  + ++ ++K  L
Sbjct: 121 VKELKQLENRLERGITRIRSKKHEL 145

[Close]

BLAST of Lcy12g019270 vs. ExPASy TrEMBL
Match: A0A2P5BDM0 (MADS-box transcription factor OS=Trema orientale OX=63057 GN=TorMADS29 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE  ++R VTF KR+  LIK AYELSVLCD+D+ALI+ SP+G +SFFS N
Sbjct: 1   MGRVKLQIKRIESTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSFFSGN 60

Query: 61  SS----------------GGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIR 120
            S                G     + +++ IQ E+L   SQL E+   L  FEG  S+I 
Sbjct: 61  KSIEEILARYVNLPEQEQGRPTSTDSQLEEIQQEILCVGSQLEEMENRLRIFEGDPSEIT 120

Query: 121 TIGEAENVEKILEETLRKLLARKQVLQR 133
           T+ EA+  E+ILEETL+K+  RKQ L++
Sbjct: 121 TVHEADYREQILEETLKKVCMRKQDLEK 148

[Close]

BLAST of Lcy12g019270 vs. ExPASy TrEMBL
Match: A0A2P5XKT0 (MADS-box domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA16714 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 68/155 (43.87%), Postives = 95/155 (61.29%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE+ ++R VTF KR+  LIK AYELSVLCD+D+ALI+ SP+G LS FS N
Sbjct: 1   MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSGN 60

Query: 61  SS----------------GGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIR 120
            S                G       +++  Q E++  KS++  + K L  FEG  S+I 
Sbjct: 61  KSIEEILGRYVNLPEHERGSPESINPQLEEFQQEIINCKSRIANMEKRLRIFEGDASEIT 120

Query: 121 TIGEAENVEKILEETLRKLLARKQVLQRQCNSSEP 140
           T+ +A+  E+ILEETL+++   KQVL+ +  S  P
Sbjct: 121 TLIQADYHEQILEETLKQVRLHKQVLEEKYTSPGP 155

[Close]

BLAST of Lcy12g019270 vs. ExPASy TrEMBL
Match: A0A498J906 (MADS-box domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_020649 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23
Identity = 73/150 (48.67%), Postives = 95/150 (63.33%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE+ ++R VTF KR+  LIK AYELSVLCD+D+ALII S +G LS FS N
Sbjct: 165 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIIFSSSGRLSLFSGN 224

Query: 61  SS------------------GGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGV-LS 120
            S                    S     +++ IQ +++  KS+L E+   L  FEG  LS
Sbjct: 225 KSIEEILARYINLPANRRGRPMSGTDSDQLEEIQQDIVCCKSKLEEMGNRLRIFEGEDLS 284

Query: 121 KIRTIGEAENVEKILEETLRKLLARKQVLQ 132
           +IRT+ EAE  E+ILEETL++L  RKQVL+
Sbjct: 285 EIRTLHEAEYREQILEETLKRLRVRKQVLE 314

[Close]

BLAST of Lcy12g019270 vs. ExPASy TrEMBL
Match: A0A7J6FNQ7 (MADS-box domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_018768 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 66/128 (51.56%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSA- 60
           MGRVKL IK+IE+ ++R VTF KR+  LIK AYELSVLCD+D+AL++ SP+G LSFFS+ 
Sbjct: 1   MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDLALVMFSPSGRLSFFSSR 60

Query: 61  NSSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIRTIGEAENVEKILEET 120
           N S  S+D   +++ IQ  +L  + QL+E+   L  +EG  S+I T+ EAE  E+IL+ET
Sbjct: 61  NKSRTSSD--SQLEEIQQVILCFRLQLKEMENRLRIYEGDPSEITTLLEAEYWEQILQET 120

Query: 121 LRKLLARK 128
           L+ +  RK
Sbjct: 121 LKNVCLRK 126

[Close]

BLAST of Lcy12g019270 vs. ExPASy TrEMBL
Match: A0A438DYA2 (Agamous-like MADS-box protein AGL104 OS=Vitis vinifera OX=29760 GN=AGL104_2 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 72/182 (39.56%), Postives = 100/182 (54.95%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IKKIE+ ++R VTF KR+  LIK AYELSVLCD+D+ALI+ SP+G +S FS N
Sbjct: 1   MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRISLFSGN 60

Query: 61  SS-------------------------------------------GGSNDYEQRIKNIQH 120
            S                                                 + +++ IQ 
Sbjct: 61  KSIEEIMTRYVNLPEHERGRLHNQEFLQRALGKLKSEANRTYQAAASPMSTDSQLEEIQQ 120

Query: 121 EVLTSKSQLRELRKGLGAFEGVLSKIRTIGEAENVEKILEETLRKLLARKQVLQRQCNSS 140
           E+L  KSQL +++K L  FEG  S+I T+ E E  E+ILEETL+++  +KQ L+ + N++
Sbjct: 121 EILKYKSQLDDMQKRLRIFEGDPSEITTVREVEYREQILEETLKQVRFQKQALEEKYNTT 180

[Close]

BLAST of Lcy12g019270 vs. NCBI nr
Match: KAG5033996.1 (hypothetical protein JHK87_008906 [Glycine soja] >KAG5048193.1 hypothetical protein JHK85_009296 [Glycine max] >KAG5065315.1 hypothetical protein JHK86_009046 [Glycine max])

HSP 1 Score: 125.2 bits (313), Expect = 5.3e-25
Identity = 71/147 (48.30%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKLPIKKIE+ ++R VTF KR+  LIK AYELSVLCD+D+ALI+ SP+G  +FFS N
Sbjct: 1   MGRVKLPIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATFFSGN 60

Query: 61  SS----------------GGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIR 120
            S                G S   + +I++++ E+ T KSQL E+ K L  FEG  S+I 
Sbjct: 61  KSIEEILERYVNLSEGEHGSSMTSDSQIEDLRREIFTCKSQLEEMEKRLRIFEGDPSEIT 120

Query: 121 TIGEAENVEKILEETLRKLLARKQVLQ 132
           T+ EAE  E +L +TL+++  RK VL+
Sbjct: 121 TLSEAEYREYVLRDTLKQVQLRKCVLE 147

[Close]

BLAST of Lcy12g019270 vs. NCBI nr
Match: KAG6626446.1 (hypothetical protein CIPAW_15G048700 [Carya illinoinensis])

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-24
Identity = 75/170 (44.12%), Postives = 109/170 (64.12%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE+ ++R VTF KR+  LIK AYELSVLCDID+ALI+ SP+G LS F+ N
Sbjct: 1   MGRVKLQIKRIENTANRQVTFSKRRNGLIKKAYELSVLCDIDVALIMFSPSGRLSHFAGN 60

Query: 61  ------------------SSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSK 120
                              S  ++  + +++ +Q E+L+ KSQL++++  L  FEG  S+
Sbjct: 61  KSIEEILARYFNLPEHERGSSPTSTADSKLEEVQQEILSCKSQLKDMQNRLRVFEGDPSE 120

Query: 121 IRTIGEAENVEKILEETLRKLLARKQVLQRQCNS--SEPSAELLRVRNPN 151
           I T+ EAE  E+IL++TLR +  RKQVL++  NS  + P+A  ++V   N
Sbjct: 121 IITLCEAEYREQILKDTLRHVHMRKQVLEQNGNSYVAPPTASEVQVLPQN 170

[Close]

BLAST of Lcy12g019270 vs. NCBI nr
Match: PON46892.1 (MADS-box transcription factor [Trema orientale])

HSP 1 Score: 122.1 bits (305), Expect = 4.5e-24
Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE  ++R VTF KR+  LIK AYELSVLCD+D+ALI+ SP+G +SFFS N
Sbjct: 1   MGRVKLQIKRIESTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSFFSGN 60

Query: 61  SS----------------GGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIR 120
            S                G     + +++ IQ E+L   SQL E+   L  FEG  S+I 
Sbjct: 61  KSIEEILARYVNLPEQEQGRPTSTDSQLEEIQQEILCVGSQLEEMENRLRIFEGDPSEIT 120

Query: 121 TIGEAENVEKILEETLRKLLARKQVLQR 133
           T+ EA+  E+ILEETL+K+  RKQ L++
Sbjct: 121 TVHEADYREQILEETLKKVCMRKQDLEK 148

[Close]

BLAST of Lcy12g019270 vs. NCBI nr
Match: KAF8377606.1 (hypothetical protein HHK36_030988 [Tetracentron sinense])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IKKIE+ ++R VTF KR+  LIK AYELSVLCD+D+ALI+ SP+G  S FS  
Sbjct: 1   MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRASLFSGK 60

Query: 61  SSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIRTIGEAENVEKILEETL 120
             G     + +++ IQHE+   + QL E  + L  FEG   +I T+ EAE  E+ILEE L
Sbjct: 61  KRGSPKSIDSQMEEIQHEMHRCQCQLEEAERRLKFFEGDPMRISTLREAEYHEQILEEAL 120

Query: 121 RKLLARKQVLQRQ 134
             +   KQVL+ +
Sbjct: 121 NSVRMHKQVLEEK 133

[Close]

BLAST of Lcy12g019270 vs. NCBI nr
Match: XP_042961124.1 (agamous-like MADS-box protein AGL1 isoform X3 [Carya illinoinensis])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-23
Identity = 75/179 (41.90%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE+ ++R VTF KR+  LIK AYELSVLCDID+ALI+ SP+G LS F+ N
Sbjct: 1   MGRVKLQIKRIENTANRQVTFSKRRNGLIKKAYELSVLCDIDVALIMFSPSGRLSHFAGN 60

Query: 61  ---------------------------SSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGL 120
                                      +S  ++  + +++ +Q E+L+ KSQL++++  L
Sbjct: 61  KRLQNLEFLQRALLKLKSEADIRTCQEASSPTSTADSKLEEVQQEILSCKSQLKDMQNRL 120

Query: 121 GAFEGVLSKIRTIGEAENVEKILEETLRKLLARKQVLQRQCNS--SEPSAELLRVRNPN 151
             FEG  S+I T+ EAE  E+IL++TLR +  RKQVL++  NS  + P+A  ++V   N
Sbjct: 121 RVFEGDPSEIITLCEAEYREQILKDTLRHVHMRKQVLEQNGNSYVAPPTASEVQVLPQN 179

[Close]

BLAST of Lcy12g019270 vs. TAIR 10
Match: AT1G22130.1 (AGAMOUS-like 104 )

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-15
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
          MGRVKL IK+IE+ ++R VTF KR+  LIK AYELS+LCDIDIALI+ SP+  LS FS  
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFSGK 60

Query: 61 S 62
          +
Sbjct: 61 T 61

[Close]

BLAST of Lcy12g019270 vs. TAIR 10
Match: AT1G77980.1 (AGAMOUS-like 66 )

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-15
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 1  MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
          MGRVKL IK+IE+ ++R VTF KR+  LIK AYELS+LCDIDIAL++ SP+  LS FS  
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFSGK 60

Query: 61 SSGGSNDYEQRIKNIQHEVLTSKSQLRE 89
          +         RI+++    +    Q RE
Sbjct: 61 T---------RIEDVFSRYINLSDQERE 79

[Close]

BLAST of Lcy12g019270 vs. TAIR 10
Match: AT2G22630.1 (AGAMOUS-like 17 )

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-14
Identity = 59/166 (35.54%), Postives = 89/166 (53.61%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGR K+ I+KI+D +SR VTF KR+K LIK A EL++LCD ++ LII S T +L  F+++
Sbjct: 1   MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 61  SSGGSND-------YEQRIKN-------IQHEVLTSKSQLRELRKGLGAFEGVLSKIRTI 120
           S   + +        EQ + N        Q E  T + +L  L++      GV     ++
Sbjct: 61  SVKSTIERFNTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSV 120

Query: 121 GEAENVEKILEETLRKL-LARKQVLQRQCNSSEPSAELLRVRNPNH 152
            E +N+E  LE +LR + + R+Q+L  +        EL R RN  H
Sbjct: 121 KELQNIESQLEMSLRGIRMKREQILTNEIK------ELTRKRNLVH 160

[Close]

BLAST of Lcy12g019270 vs. TAIR 10
Match: AT1G77950.1 (AGAMOUS-like 67 )

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-14
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
          MGRVKL +K+IE  ++R +TF KRKK LIK AYELS LCDID+AL++ SP+  L  FS  
Sbjct: 1  MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSGQ 60

Query: 61 S 62
          +
Sbjct: 61 T 61

[Close]

BLAST of Lcy12g019270 vs. TAIR 10
Match: AT1G77950.2 (AGAMOUS-like 67 )

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-14
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MGRVKLPIKKIEDVSSRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
          MGRVKL +K+IE  ++R +TF KRKK LIK AYELS LCDID+AL++ SP+  L  FS  
Sbjct: 1  MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSGQ 60

Query: 61 S 62
          +
Sbjct: 61 T 61

The following BLAST results are available for this feature:

BLAST of Lcy12g019270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM46	5.7e-14	63.93	Agamous-like MADS-box protein AGL104 OS=Arabidopsis thaliana OX=3702 GN=AGL104 P...	[more]
Q1PFC2	9.8e-14	48.86	Agamous-like MADS-box protein AGL66 OS=Arabidopsis thaliana OX=3702 GN=AGL66 PE=...	[more]
Q38840	4.8e-13	35.54	Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana OX=3702 GN=AGL17 PE=...	[more]
F6I457	1.4e-12	33.10	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=...	[more]
A0A217EJJ0	1.4e-12	33.10	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=...	[more]

BLAST of Lcy12g019270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BDM0	2.2e-24	47.97	MADS-box transcription factor OS=Trema orientale OX=63057 GN=TorMADS29 PE=4 SV=1	[more]
A0A2P5XKT0	1.8e-23	43.87	MADS-box domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA16...	[more]
A0A498J906	4.1e-23	48.67	MADS-box domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_020649 PE...	[more]
A0A7J6FNQ7	2.0e-22	51.56	MADS-box domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_018768 PE...	[more]
A0A438DYA2	2.0e-22	39.56	Agamous-like MADS-box protein AGL104 OS=Vitis vinifera OX=29760 GN=AGL104_2 PE=4...	[more]

BLAST of Lcy12g019270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5033996.1	5.3e-25	48.30	hypothetical protein JHK87_008906 [Glycine soja] >KAG5048193.1 hypothetical prot...	[more]
KAG6626446.1	2.0e-24	44.12	hypothetical protein CIPAW_15G048700 [Carya illinoinensis]	[more]
PON46892.1	4.5e-24	47.97	MADS-box transcription factor [Trema orientale]	[more]
KAF8377606.1	1.3e-23	49.62	hypothetical protein HHK36_030988 [Tetracentron sinense]	[more]
XP_042961124.1	1.7e-23	41.90	agamous-like MADS-box protein AGL1 isoform X3 [Carya illinoinensis]	[more]

BLAST of Lcy12g019270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22130.1	4.1e-15	63.93	AGAMOUS-like 104	[more]
AT1G77980.1	6.9e-15	48.86	AGAMOUS-like 66	[more]
AT2G22630.1	3.4e-14	35.54	AGAMOUS-like 17	[more]
AT1G77950.1	7.7e-14	59.02	AGAMOUS-like 67	[more]
AT1G77950.2	7.7e-14	59.02	AGAMOUS-like 67	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..133
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..63
None	No IPR available	PANTHER	PTHR48019:SF7	AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1	coord: 69..138
None	No IPR available	PANTHER	PTHR48019:SF7	AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1	coord: 1..63
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 69..138
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 48.4 coord: 23..38 score: 63.66 coord: 38..59 score: 42.35
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.0E-23 score: 94.8
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..55 e-value: 1.6E-19 score: 69.2
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 23.800892
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..92 e-value: 5.4E-18 score: 66.8
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g019270.1	Lcy12g019270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding