Lcy12g018780 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g018780
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA binding
Location	Chr12: 46139304 .. 46139691 (+)
RNA-Seq Expression	Lcy12g018780
Synteny	Lcy12g018780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGTTCTCAAACTCAGATCCAAGTCTCTGGAGAGAAGCCCTCTCTTCTTATCCATCTCAAATCGAAGCCCTAGGCAAGCCCAATCTGGTCTCTCTCGACGAATTTTACCGCAACGAACTCCCTCTTCTTCTTCACAACCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTCATGCAATGGAAGCTCACTCGCGGCAAATGGAGGTGCTCATTGCTCTGTATCTCTTTCTTTTCATTTAGATTTCATCGATTGCTTATCAATTTTATCTCACGACGATTTTACGAATTTCAGGCCGCGTCTCTTGGACTTTGTTTCGTCATTGGATGAGTCGGTCGTCAAATCGGCCTCCCAGAAGGCAGTGCCTTCCTGA

mRNA sequence

ATGGTGGAGTTCTCAAACTCAGATCCAAGTCTCTGGAGAGAAGCCCTCTCTTCTTATCCATCTCAAATCGAAGCCCTAGGCAAGCCCAATCTGGTCTCTCTCGACGAATTTTACCGCAACGAACTCCCTCTTCTTCTTCACAACCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTCATGCAATGGAAGCTCACTCGCGGCAAATGGAGGCCGCGTCTCTTGGACTTTGTTTCGTCATTGGATGAGTCGGTCGTCAAATCGGCCTCCCAGAAGGCAGTGCCTTCCTGA

Coding sequence (CDS)

ATGGTGGAGTTCTCAAACTCAGATCCAAGTCTCTGGAGAGAAGCCCTCTCTTCTTATCCATCTCAAATCGAAGCCCTAGGCAAGCCCAATCTGGTCTCTCTCGACGAATTTTACCGCAACGAACTCCCTCTTCTTCTTCACAACCGAAACCCTAGCCCTTACATCACTACTTCCGAGCTCTCAAAACTCATGCAATGGAAGCTCACTCGCGGCAAATGGAGGCCGCGTCTCTTGGACTTTGTTTCGTCATTGGATGAGTCGGTCGTCAAATCGGCCTCCCAGAAGGCAGTGCCTTCCTGA

Protein sequence

MVEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKAVPS

Homology

[Close]

BLAST of Lcy12g018780 vs. ExPASy TrEMBL
Match: A0A0A0L3W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645280 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MVEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSEL 60
          M+EFS SDP+LWREALS+Y SQIEALGKPNLVSLD+FYRNELPL+LH RNPSPYITTSEL
Sbjct: 1  MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          SKLMQWKLTRGKWRPRLLDFVSSLDES+VK ASQKA
Sbjct: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKA 96

[Close]

BLAST of Lcy12g018780 vs. ExPASy TrEMBL
Match: A0A6J1ILC1 (uncharacterized protein LOC111477273 OS=Cucurbita maxima OX=3661 GN=LOC111477273 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MVEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSEL 60
          MVEF++SDP LW EALSSYPSQIEALGKPNLVSLD+FYRNELP LLH RNPSPYITTSEL
Sbjct: 1  MVEFAHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          SKLMQWKLTRGKWRPRL DFVSSLDES+VK ASQKA
Sbjct: 61 SKLMQWKLTRGKWRPRLFDFVSSLDESLVKLASQKA 96

[Close]

BLAST of Lcy12g018780 vs. ExPASy TrEMBL
Match: A0A5D3D9C6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002390 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.5e-41
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 2  VEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSELS 61
          ++FSNSDP+LWREALSSY SQIEALGKPNLVSLD+FYRNELPL+LH R PSPYITTSELS
Sbjct: 1  MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62 KLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          KLMQWKLTRGKWRPRLLDFVSSLDES+VK ASQKA
Sbjct: 61 KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKA 95

[Close]

BLAST of Lcy12g018780 vs. ExPASy TrEMBL
Match: A0A5A7VB62 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001890 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.5e-41
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 2  VEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSELS 61
          ++FSNSDP+LWREALSSY SQIEALGKPNLVSLD+FYRNELPL+LH R PSPYITTSELS
Sbjct: 1  MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62 KLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          KLMQWKLTRGKWRPRLLDFVSSLDES+VK ASQKA
Sbjct: 61 KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKA 95

[Close]

BLAST of Lcy12g018780 vs. ExPASy TrEMBL
Match: A0A6J1F8K0 (uncharacterized protein LOC111443296 OS=Cucurbita moschata OX=3662 GN=LOC111443296 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.5e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 2  VEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSELS 61
          +EFS+SDP LW EALSSYPS+IEALGKPNLVSLDEFYRNELP LLH RNPSPYITTSELS
Sbjct: 1  MEFSHSDPGLWSEALSSYPSRIEALGKPNLVSLDEFYRNELPPLLHKRNPSPYITTSELS 60

Query: 62 KLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          KLMQWKLTRGKWRPRLLDFVSSLDES+VK ASQKA
Sbjct: 61 KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKA 95

[Close]

BLAST of Lcy12g018780 vs. NCBI nr
Match: KAG6591445.1 (hypothetical protein SDJN03_13791, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.6 bits (457), Expect = 6.4e-42
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MVEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSEL 60
          MVEFS+SDP LW EALSSYPSQIEALGKPNLVSLD+FYRNELP LLH RNPSPYITTSEL
Sbjct: 1  MVEFSHSDPGLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPPLLHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          SKLMQWKLTRGKWRPRLLDFVSSLDES+VK ASQKA
Sbjct: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKA 96

[Close]

BLAST of Lcy12g018780 vs. NCBI nr
Match: XP_038898859.1 (uncharacterized protein LOC120086335 isoform X2 [Benincasa hispida])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MVEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSEL 60
          M+EFSNSDP+LWREALSSY SQIEALGKPNL SLD+FYRNELP LLH RNP+PYITTSEL
Sbjct: 1  MMEFSNSDPTLWREALSSYSSQIEALGKPNLASLDDFYRNELPRLLHKRNPNPYITTSEL 60

Query: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          SKLMQWKLTRGKWRPRLLDFVSSLDES+VK ASQKA
Sbjct: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKA 96

[Close]

BLAST of Lcy12g018780 vs. NCBI nr
Match: XP_038898858.1 (uncharacterized protein LOC120086335 isoform X1 [Benincasa hispida])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MVEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSEL 60
          M+EFSNSDP+LWREALSSY SQIEALGKPNL SLD+FYRNELP LLH RNP+PYITTSEL
Sbjct: 1  MMEFSNSDPTLWREALSSYSSQIEALGKPNLASLDDFYRNELPRLLHKRNPNPYITTSEL 60

Query: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          SKLMQWKLTRGKWRPRLLDFVSSLDES+VK ASQKA
Sbjct: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKA 96

[Close]

BLAST of Lcy12g018780 vs. NCBI nr
Match: XP_004141302.1 (uncharacterized protein LOC101204707 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 3.2e-41
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MVEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSEL 60
          M+EFS SDP+LWREALS+Y SQIEALGKPNLVSLD+FYRNELPL+LH RNPSPYITTSEL
Sbjct: 1  MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          SKLMQWKLTRGKWRPRLLDFVSSLDES+VK ASQKA
Sbjct: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKA 96

[Close]

BLAST of Lcy12g018780 vs. NCBI nr
Match: KAE8649898.1 (hypothetical protein Csa_012324 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 3.2e-41
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MVEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSEL 60
          M+EFS SDP+LWREALS+Y SQIEALGKPNLVSLD+FYRNELPL+LH RNPSPYITTSEL
Sbjct: 1  MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKA 97
          SKLMQWKLTRGKWRPRLLDFVSSLDES+VK ASQKA
Sbjct: 61 SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKA 96

[Close]

BLAST of Lcy12g018780 vs. TAIR 10
Match: AT3G12210.2 (DNA binding )

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-36
Identity = 71/98 (72.45%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 2   VEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSELS 61
           +EF  SD  +W+EALSSY S+IE+L KP LVSLD+FYR +LP LLH+R+P+PY+TTSELS
Sbjct: 3   LEFKCSDVGVWKEALSSYDSRIESLNKPELVSLDQFYRIKLPCLLHDRDPNPYLTTSELS 62

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKAVPS 100
           +LM+WKL+RGKWRPRLLDFVSSLD+SVVKSAS+KA  S
Sbjct: 63  QLMKWKLSRGKWRPRLLDFVSSLDDSVVKSASEKAFKS 100

[Close]

BLAST of Lcy12g018780 vs. TAIR 10
Match: AT3G12210.1 (DNA binding )

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-36
Identity = 71/98 (72.45%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 2   VEFSNSDPSLWREALSSYPSQIEALGKPNLVSLDEFYRNELPLLLHNRNPSPYITTSELS 61
           +EF  SD  +W+EALSSY S+IE+L KP LVSLD+FYR +LP LLH+R+P+PY+TTSELS
Sbjct: 3   LEFKCSDVGVWKEALSSYDSRIESLNKPELVSLDQFYRIKLPCLLHDRDPNPYLTTSELS 62

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESVVKSASQKAVPS 100
           +LM+WKL+RGKWRPRLLDFVSSLD+SVVKSAS+KA  S
Sbjct: 63  QLMKWKLSRGKWRPRLLDFVSSLDDSVVKSASEKAFKS 100

The following BLAST results are available for this feature:

BLAST of Lcy12g018780 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g018780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W6	1.5e-41	89.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645280 PE=4 SV=1	[more]
A0A6J1ILC1	2.0e-41	89.58	uncharacterized protein LOC111477273 OS=Cucurbita maxima OX=3661 GN=LOC111477273...	[more]
A0A5D3D9C6	4.5e-41	89.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VB62	4.5e-41	89.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1F8K0	4.5e-41	90.53	uncharacterized protein LOC111443296 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]

BLAST of Lcy12g018780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591445.1	6.4e-42	91.67	hypothetical protein SDJN03_13791, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038898859.1	2.4e-41	89.58	uncharacterized protein LOC120086335 isoform X2 [Benincasa hispida]	[more]
XP_038898858.1	2.4e-41	89.58	uncharacterized protein LOC120086335 isoform X1 [Benincasa hispida]	[more]
XP_004141302.1	3.2e-41	89.58	uncharacterized protein LOC101204707 [Cucumis sativus]	[more]
KAE8649898.1	3.2e-41	89.58	hypothetical protein Csa_012324 [Cucumis sativus]	[more]

BLAST of Lcy12g018780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12210.2	1.1e-36	72.45	DNA binding	[more]
AT3G12210.1	1.1e-36	72.45	DNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21521	UNCHARACTERIZED	coord: 2..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g018780.1	Lcy12g018780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006865	amino acid transport
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015293	symporter activity