Lcy12g018660 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g018660
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Arabinogalactan peptide
Location	Chr12: 46024906 .. 46025752 (-)
RNA-Seq Expression	Lcy12g018660
Synteny	Lcy12g018660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCACGCAACTGAAGGTTCTGGAAACAAAGCCATTGTAAATTCCCAAAACGACAACCGTCCAAATTCACGACATCCATGTGTCATCAACCATCACACACGAAAACAGCCTGTAATTGCCAGCGCTGCCACGCGTCCCATTTCCATTGGATACTCGCTGCAGAATTGTTATTTGGTACAAGTGGGCCCCAACTAAACGAAAACCCCACTTTGCAGCTACGCTTACGTTTCATCACATTTTCGCCGTAGTTGGTAATTTCTTCTCCACACGCCATTACCAGCGCGTGTTTCTCACATCTATCCCCCGCATCGTCCGATCAGTTCCCCCACGTTCTCACCGTCCGATTCGTTTGGGATGCTAAACGACGACGTTAAAGTAGCTGAACCGAAACTGTGGAATTTGGACGGTGGGTGATCCACCCATCTTAAGAAAATGAGCTGTCACTCAACCAATGGCCAGCTTGTAACTCGGGCAGCTGCCCGTCCTGCCCAATTCTCTCTCCTCCACTCGTTTTTAAGCCGCCCTCTTTCTTTATATAAACAGCCCCACCGTATTCTTTTTCCGTTGCCAAAGTTCCATTTCATTCTTAACTCTTTCAGTTTTCTACAGTCTATTTTCTCCCAAAACCCTAGAAATTTTCACAGCAATGGCCGCCGTCTCCAACGCTACCTTCATGGCTCTTGTAGCTTTTCTGTTCGCCGTCCTCTCCATTGCCGTCGCGCAATCTGCTGAGTCTCCTGCTCCCGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTCGCTTGCGTTGGTGCTTTCGTCGCTCTCGTCTTCGGATCTGCACTTAAGGCTTGA

mRNA sequence

ATGGACCACGCAACTGAAGGTTCTGGAAACAAAGCCATTGTAAATTCCCAAAACGACAACCGTCCAAATTCACGACATCCATGTGTCATCAACCATCACACACGAAAACAGCCTGTAATTGCCAGCGCTGCCACGCTTTTCTACAGTCTATTTTCTCCCAAAACCCTAGAAATTTTCACAGCAATGGCCGCCGTCTCCAACGCTACCTTCATGGCTCTTGTAGCTTTTCTGTTCGCCGTCCTCTCCATTGCCGTCGCGCAATCTGCTGAGTCTCCTGCTCCCGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTCGCTTGCGTTGGTGCTTTCGTCGCTCTCGTCTTCGGATCTGCACTTAAGGCTTGA

Coding sequence (CDS)

ATGGACCACGCAACTGAAGGTTCTGGAAACAAAGCCATTGTAAATTCCCAAAACGACAACCGTCCAAATTCACGACATCCATGTGTCATCAACCATCACACACGAAAACAGCCTGTAATTGCCAGCGCTGCCACGCTTTTCTACAGTCTATTTTCTCCCAAAACCCTAGAAATTTTCACAGCAATGGCCGCCGTCTCCAACGCTACCTTCATGGCTCTTGTAGCTTTTCTGTTCGCCGTCCTCTCCATTGCCGTCGCGCAATCTGCTGAGTCTCCTGCTCCCGCACCGGCTTCTCCGGCTACCTCTGTCGTGCCGTCGTTGAGCTTCGCTTGCGTTGGTGCTTTCGTCGCTCTCGTCTTCGGATCTGCACTTAAGGCTTGA

Protein sequence

MDHATEGSGNKAIVNSQNDNRPNSRHPCVINHHTRKQPVIASAATLFYSLFSPKTLEIFTAMAAVSNATFMALVAFLFAVLSIAVAQSAESPAPAPASPATSVVPSLSFACVGAFVALVFGSALKA

Homology

[Close]

BLAST of Lcy12g018660 vs. ExPASy TrEMBL
Match: Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.2e-16
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 62  MAAVSNATFMALVAFLFAVLSIAVAQSAESPAPAPASPATSVVPSLSFACVGAFVALVFG 121
           MAAVS  +FMALVA LFAVLS+AVAQSAESPAP PASPA SVVPSLSFACVGAF+AL+FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 122 SALKA 127
           SALKA
Sbjct: 61  SALKA 65

[Close]

BLAST of Lcy12g018660 vs. ExPASy TrEMBL
Match: A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-06
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 49  SLFSPKTLEIFTAMAAVSNATFMALVAFLFAVLSIAVAQSAESPAPAPASPATSVVPSLS 108
           S  +P+   +F  MAA+S  + +AL+A +FA+ S+A   + E+PAP+PASPATS+ PS  
Sbjct: 54  STLTPRPHYLFYPMAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAV 113

Query: 109 FACVGAFVALVFGSALK 126
            AC+ AF+AL FGS L+
Sbjct: 114 SACLAAFLALAFGSTLR 127

[Close]

BLAST of Lcy12g018660 vs. ExPASy TrEMBL
Match: A0A2P5DTQ4 (Arabinogalactan peptide OS=Parasponia andersonii OX=3476 GN=PanWU01x14_033560 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.3e-04
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 63  AAVSNATFMALVAFLFAVLS-IAVAQSAESPAPAPASPATSVVPSLSFACVGAFVALVFG 122
           A+ SNA+ + L+A +  VLS +  A +AE+PAP+PASPA+++ PS   AC+ A VALVFG
Sbjct: 3   ASSSNASLIVLMAVIVTVLSVVGAAHAAEAPAPSPASPASAISPSFLSACLAALVALVFG 62

Query: 123 SALK 126
           SA++
Sbjct: 63  SAVR 66

[Close]

BLAST of Lcy12g018660 vs. ExPASy TrEMBL
Match: A0A2P5EL16 (Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.5e-04
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 66  SNATFMALVAFLFAVLS-IAVAQSAESPAPAPASPATSVVPSLSFACVGAFVALVFGSAL 125
           SNA+ + L+A +  VLS +  A +AE+PAP+PASPA+++ PS   AC+ A VALVFGSA+
Sbjct: 6   SNASLIVLMAVIVTVLSVVGAAHAAEAPAPSPASPASAISPSFLSACLAALVALVFGSAV 65

[Close]

BLAST of Lcy12g018660 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.8 bits (260), Expect = 5.7e-19
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 55  TLEIFTAMAAVSNATFMALVAFLFAVLSIAVAQSAESPAPAPASPATSVVPSLSFACVGA 114
           TLEIF AMAAVS  +FMALVA LF V+S+AVAQSAESPAPAPASPATSVVPSLS ACVGA
Sbjct: 17  TLEIFRAMAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGA 76

Query: 115 FVALVFGSALKA 127
           FVALVFGSALKA
Sbjct: 77  FVALVFGSALKA 88

[Close]

BLAST of Lcy12g018660 vs. NCBI nr
Match: KAG6591454.1 (hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 6.3e-18
Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 45  TLFYSLFSPK----TLEIFTAMAAVSNATFMALVAFLFAVLSIAVAQSAESPAPAPASPA 104
           ++ +  F PK      EIF AMAAVS  +FMALVA LF V+S+AVAQSAESPAPAPASPA
Sbjct: 7   SIIFKPFGPKYHNHGPEIFRAMAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPA 66

Query: 105 TSVVPSLSFACVGAFVALVFGSALKA 127
           TSVVPSLS ACVGAFVALVFGSALKA
Sbjct: 67  TSVVPSLSVACVGAFVALVFGSALKA 92

[Close]

BLAST of Lcy12g018660 vs. NCBI nr
Match: KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-16
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 62  MAAVSNATFMALVAFLFAVLSIAVAQSAESPAPAPASPATSVVPSLSFACVGAFVALVFG 121
           MAAVS  +FMALVA LFAVLS+AVAQSAESPAP PASPA SVVPSLSFACVGAF+AL+FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 122 SALKA 127
           SALKA
Sbjct: 61  SALKA 65

[Close]

BLAST of Lcy12g018660 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 38  PVIASAATLFYSLFSPKT-------LEIFTAMAAVSNATFMALVAFLFAVLSIAVAQSAE 97
           P+  S+  LF SL S  +        +I  +MA VS A+ +AL+A +FAV S+A   + E
Sbjct: 37  PIDGSSLNLFRSLSSSPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVA---ATE 96

Query: 98  SPAPAPASPATSVVPSLSFACVGAFVALVFGSALK 126
           +PAP+PASPATS+ PS   ACV AFVAL FGS L+
Sbjct: 97  APAPSPASPATSIAPSFVSACVAAFVALAFGSTLR 128

[Close]

BLAST of Lcy12g018660 vs. NCBI nr
Match: KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 9.4e-06
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 49  SLFSPKTLEIFTAMAAVSNATFMALVAFLFAVLSIAVAQSAESPAPAPASPATSVVPSLS 108
           S  +P+   +F  MAA+S  + +AL+A +FA+ S+A   + E+PAP+PASPATS+ PS  
Sbjct: 54  STLTPRPHYLFYPMAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAV 113

Query: 109 FACVGAFVALVFGSALK 126
            AC+ AF+AL FGS L+
Sbjct: 114 SACLAAFLALAFGSTLR 127

The following BLAST results are available for this feature:

BLAST of Lcy12g018660 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g018660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q96504	2.2e-16	86.15	CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1	[more]
A0A0A0LKU1	4.6e-06	48.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1	[more]
A0A2P5DTQ4	7.3e-04	51.56	Arabinogalactan peptide OS=Parasponia andersonii OX=3476 GN=PanWU01x14_033560 PE...	[more]
A0A2P5EL16	9.5e-04	52.46	Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV...	[more]

BLAST of Lcy12g018660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024335.1	5.7e-19	87.50	hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591454.1	6.3e-18	74.42	hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN55315.1	4.5e-16	86.15	hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat...	[more]
KAG6598305.1	3.8e-07	48.42	hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN62403.1	9.4e-06	48.05	hypothetical protein Csa_018595 [Cucumis sativus]	[more]

BLAST of Lcy12g018660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g018660.1	Lcy12g018660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane