Lcy12g017810 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g017810
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	chaperone protein DnaJ
Location	Chr12: 45351263 .. 45354140 (+)
RNA-Seq Expression	Lcy12g017810
Synteny	Lcy12g017810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGTTCTGTGTGTTGCAGGCCTGTGATTATGGCGAAATCGACCGACGGCAGAGGATTTGCTTCTACAAGAATATTGCCGATCGGTTCGGGATTTTCTCCGCCTCGTGTTTCGTCCACCGATTCGAGGCTGTTGAACTCTAGGATTTGTGGCGTGCGAGCTAGTACGGTGGATTCTTATGGAAGCTCTGATTTCGTCAAGAGGATGGAGCAAGCATGGGAGATCTCTCAGGTACTCGCACTCTTGAACGCTTCTCGTAATTTCCTTTTCTTTCATGGCTGTTTCATTTAGTTCTCTCTCTGTCTCGTTCTCTTGTTTGAGTGATGGTGGAACGAGTAGATGTTACCTTCCTCTTCTTAGGTCATGTGTTTCCTCTCAACGAAGATTGAAATATTCATTTTCTCTCACACTCTACAAAGATTCATGGCGACATTTATGAACCTAATCGAGGAAATTAGTCCTGATAATTCAACTAGCCTGTTTGCTTAGATTCCTTTCCTGCGTTATTGCGGTCAGGAGGAAGAGAAACCGCAAATTTCCTAATTCTAATCCTCAGAGCGTAGCTTAGACTTCAAAGTTTTATAACGGTATTGGTTAACCTAATCGAAGAAATCAGTCCTCATAACATTACGCGCCTGTTTGCTTGCGATCAGGAGGAGGAGCCGGCGAATTTTCTAATCGTTTGATTCTTCTGTCATACCAAGCCGTTTAGAACTAATATTCAAATTCTTTGGAACTCTGCTTCTTCTAAGCCTATTCGTAGCTTATATTTTGTTTCCTGTTCATCATCTTATCGTAGTATGACTTGCAATATTTAAAACAAAAACTATTCTGTGTGTTTCTGTTCGAACTTAAGATGAATTGAATGCGACATCATGAACAGCGTAACATTCCTGATTATTTGACGGCTTAATTTCAAATTTCAATTTCGTGTCTGTTTACATATGTTGACAGCAACCAACGCCTATTGGCTGTTCTTCTTGCAACTCGAATGGACATGTTGAGTGCAAATGGTGTGCGGGAACAGGCTTCTTTATTCTTGGTGATAACATGCTATGTCAAGTTCCTTCCAGAAACACTACTTGTGTCATCTGTGCTGGCAAGGTAATTTCGGAACTGGCTCGATCTTTTTTCTCTCTTTCCTCCCTGAATATTGAATTGGAGTAGTCGTATTCTTTGTTCATGAATTGAATTACTTTTACGGTGTGTTTGCTGGCGATCTAATTGGAAGTAATTTTTAATAATTAATATTTACTTGAGAAATATTTTTAGAATTGATTAATCACTAAAACTAAATAATTAAAACTAAGTTACTAGGTTCGAGTGCATAGAGAAATTAGTGAGAAAAATATGTAAAAGCATGAGCTAGCGTGAGAAAGTATGCGTAGGAAGTACTGAGGAATAGTATGTGTTATGTTACATGAGATTAAGGATAGAGCGTTTAAGTCAAAATTATTTCATTTTCTTCCTTGCAAAACACTTTTAAGTGCTCTGCTCCTGGTTTCTCTGAAAAGTGTTTCTAAATTGTACTCCATCATAAACATTTGAGATAGGCCAAAATGGGCTAGCACTTTCTAGTTTCTATCATACACTTGAGCACTTTCTAAATACTTACGTATGATCTAAAGGGTTTTTAAATACTTGGTGCACTTACATATATTTTCTCTTGTTAATTTAGAAATACATTTTAAAAAGATTAAAAACATCTGGAAGTAAATTTTTCAAGAAGGAATTAGTTTTTTATTTTAGTTCAACAATTGAAGCGGGGTGGGGGTTCGAATCATCCTTTGGGATGGTGTACTATTGATTGAGCTATGCTCGGATTGACAAAAAAGGAATTTGTTTGTGCTTGTATTTTTGGCTCAAATGTTTTATCCTTAATCTTTCACTGCTTATTTCAACCCAAAAAAAAAAAAGAAAAAAAGATCACTGCACACTTTCCTTTTGCTTCTCTCCATGTATTTTCTTTTTCTGACTTTATCTCTTTGTACGCTCACATCACTCATCACTCTACTCTACTCTATGAGTGCATTTTCTCGCCTCCCACTATTCTCTCTATACATTTTCTATGGCTAACTTCTCCAAACGCTCACTTCATTCTTGAACTAAATTCATGTCGTAAATCCTCTCCCACCAATTTCGCTATTTCCATGATCTCTCTTCACACACATATTTTACATATTTTACACTATCATCTCCCACCAATTTTGCCATTTCATTTTTTTTTTTTTTTTTTAAATCTGGCTAAGAATTCAAATATCTCCTTAATGAGAGACCATTATAAAGAAATTAGGAAACCCGAACCAAAAACCAAATAGACCAATTTTGCTATTTCATGTCTTTCAGGGCTCTATGCGTTGCTCGGACTGCAAGGGAACAGGTTACCGAGCCAGGTGGCTGGGAGAGCCCCCCATCTCTAAATAGCTCTTTTGCCCGAAACTTCGTAAAAATTTCCAGAGCATATGGTGCTGCCAGGTCTGTCAACTATTATTTTCCATTTAAATTTTTAATGTGTTTACATTTTTTAAAAAAATCTCATAACCAGCGTCTAGTGTAGCTTTAGATGTTATCATTTCATAGTGAAAATGAAAAGGTTCCTTCCATTCGTTGCTTTTATTGTATTTGAGCATGTGAATAAAATTGTTGCAGGGCTTTCTGCCGTTTTAAAGTATTTGACGTACATGTATAGATGTTTATTGTTTTTTAGCAAAATTTCCGCTAGTCTTTTTTTATAAATAGTTATATCCAAGTTACATTTGGCTCACAAGGTGTGCAAAAGCACGTGGTGATGATTCTACTTGTTGACATCTTTAGCTTTGGCATGCCGAATAGTTTGAACAGATCACCTTCATGGTCTCAGAAAACAATGGCTTGA

mRNA sequence

ATGGCGAGTTCTGTGTGTTGCAGGCCTGTGATTATGGCGAAATCGACCGACGGCAGAGGATTTGCTTCTACAAGAATATTGCCGATCGGTTCGGGATTTTCTCCGCCTCGTGTTTCGTCCACCGATTCGAGGCTGTTGAACTCTAGGATTTGTGGCGTGCGAGCTAGTACGGTGGATTCTTATGGAAGCTCTGATTTCGTCAAGAGGATGGAGCAAGCATGGGAGATCTCTCAGGTCATGTGTTTCCTCTCAACGAAGATTGAAATATTCATTTTCTCTCACACTCTACAAAGATTCATGGCGACATTTATGAACCTAATCGAGGAAATTAGTCCTGATAATTCAACTAGCCTCAACCAACGCCTATTGGCTGTTCTTCTTGCAACTCGAATGGACATGTTGAGTGCAAATGGTGTGCGGGAACAGGCTTCTTTATTCTTGGTGATAACATGCTATGTCAAGTTCCTTCCAGAAACACTACTTGTGTCATCTGTGCTGGCAAGGGCTCTATGCGTTGCTCGGACTGCAAGGGAACAGGTTACCGAGCCAGGTGGCTGGGAGAGCCCCCCATCTCTAAATAGCTCTTTTGCCCGAAACTTCGTAAAAATTTCCAGAGCATATGGTGCTGCCAGCTTTGGCATGCCGAATAGTTTGAACAGATCACCTTCATGGTCTCAGAAAACAATGGCTTGA

Coding sequence (CDS)

ATGGCGAGTTCTGTGTGTTGCAGGCCTGTGATTATGGCGAAATCGACCGACGGCAGAGGATTTGCTTCTACAAGAATATTGCCGATCGGTTCGGGATTTTCTCCGCCTCGTGTTTCGTCCACCGATTCGAGGCTGTTGAACTCTAGGATTTGTGGCGTGCGAGCTAGTACGGTGGATTCTTATGGAAGCTCTGATTTCGTCAAGAGGATGGAGCAAGCATGGGAGATCTCTCAGGTCATGTGTTTCCTCTCAACGAAGATTGAAATATTCATTTTCTCTCACACTCTACAAAGATTCATGGCGACATTTATGAACCTAATCGAGGAAATTAGTCCTGATAATTCAACTAGCCTCAACCAACGCCTATTGGCTGTTCTTCTTGCAACTCGAATGGACATGTTGAGTGCAAATGGTGTGCGGGAACAGGCTTCTTTATTCTTGGTGATAACATGCTATGTCAAGTTCCTTCCAGAAACACTACTTGTGTCATCTGTGCTGGCAAGGGCTCTATGCGTTGCTCGGACTGCAAGGGAACAGGTTACCGAGCCAGGTGGCTGGGAGAGCCCCCCATCTCTAAATAGCTCTTTTGCCCGAAACTTCGTAAAAATTTCCAGAGCATATGGTGCTGCCAGCTTTGGCATGCCGAATAGTTTGAACAGATCACCTTCATGGTCTCAGAAAACAATGGCTTGA

Protein sequence

MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDSYGSSDFVKRMEQAWEISQVMCFLSTKIEIFIFSHTLQRFMATFMNLIEEISPDNSTSLNQRLLAVLLATRMDMLSANGVREQASLFLVITCYVKFLPETLLVSSVLARALCVARTAREQVTEPGGWESPPSLNSSFARNFVKISRAYGAASFGMPNSLNRSPSWSQKTMA

Homology

[Close]

BLAST of Lcy12g017810 vs. ExPASy TrEMBL
Match: A0A6J1IHL0 (uncharacterized protein LOC111477293 OS=Cucurbita maxima OX=3661 GN=LOC111477293 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1  MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
          M SSVC RPVI+AKS DGRGF+STRI+ IGS F+  RVS TDSRLL+SRICG RAS VDS
Sbjct: 1  MTSSVCFRPVILAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASLVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]

BLAST of Lcy12g017810 vs. ExPASy TrEMBL
Match: A0A6J1F6R2 (uncharacterized protein LOC111442664 OS=Cucurbita moschata OX=3662 GN=LOC111442664 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
          M+SSVC RPVI+AKS DGRGF+STRI+ IGS F+  RVS TDSRLL+SRICG RAS VDS
Sbjct: 1  MSSSVCFRPVIIAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]

BLAST of Lcy12g017810 vs. ExPASy TrEMBL
Match: A0A6J1CHM4 (uncharacterized protein LOC111011719 OS=Momordica charantia OX=3673 GN=LOC111011719 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1  MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
          MAS VCCRPV  AK  DGRGF STRI+PIG+GF+ P +S  DS++L+ RICGVRAS VDS
Sbjct: 1  MASCVCCRPVNTAKPIDGRGFVSTRIVPIGAGFAAPHLSFNDSKILSPRICGVRASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          +GSSDF KRMEQAWEISQ
Sbjct: 61 HGSSDFAKRMEQAWEISQ 78

[Close]

BLAST of Lcy12g017810 vs. ExPASy TrEMBL
Match: A0A1S3BVK1 (chaperone protein DnaJ OS=Cucumis melo OX=3656 GN=LOC103493730 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-22
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
          M+SSVCC+ VIMAKS DG+GF STR + I S F+  RVS  DSRL  SRICGVRAS VDS
Sbjct: 1  MSSSVCCKSVIMAKSIDGKGFPSTRTVSICSRFAAIRVSLIDSRLFKSRICGVRASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]

BLAST of Lcy12g017810 vs. ExPASy TrEMBL
Match: A0A0A0L478 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651790 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-21
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
          M+SSVCC+ VIMAKS D +GFA TR + I S F+  RVS  DSRL  SRICGVRAS VDS
Sbjct: 1  MSSSVCCKSVIMAKSIDSKGFACTRTVSICSRFAANRVSLIDSRLFKSRICGVRASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]

BLAST of Lcy12g017810 vs. NCBI nr
Match: KAE8649933.1 (hypothetical protein Csa_011967 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-39
Identity = 108/188 (57.45%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 1   MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
           M+SSVCC+ VIMAKS D +GFA TR + I S F+  RVS  DSRL  SRICGVRAS VDS
Sbjct: 1   MSSSVCCKSVIMAKSIDSKGFACTRTVSICSRFAANRVSLIDSRLFKSRICGVRASMVDS 60

Query: 61  YGSSDFVKRMEQAWEISQV---MCFLSTKIEIFIFSHTLQRFMATFMNLIEEISPDNSTS 120
           YGSSDFVKRMEQAWEISQ    + FL +   + ++   +   +    + I +        
Sbjct: 61  YGSSDFVKRMEQAWEISQANVPISFLISDSSVVLWQFRIYIRLHQHDSRIFKF-----LE 120

Query: 121 LNQRLLAVLLATRMDMLSANGVREQASLFLVITCYVKFLPETLLVSSVLARALCVARTAR 180
           LNQ L A L AT+MDMLSANGV E ASLFL I C+VKFLPETL VS V AR L VA T +
Sbjct: 121 LNQGLFAALPATQMDMLSANGVEELASLFLEIICFVKFLPETLAVSFVPARDLGVALTVK 180

Query: 181 EQVTEPGG 186
            QVT P G
Sbjct: 181 AQVTGPNG 183

[Close]

BLAST of Lcy12g017810 vs. NCBI nr
Match: XP_022977132.1 (uncharacterized protein LOC111477293 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-24
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1  MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
          M SSVC RPVI+AKS DGRGF+STRI+ IGS F+  RVS TDSRLL+SRICG RAS VDS
Sbjct: 1  MTSSVCFRPVILAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASLVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]

BLAST of Lcy12g017810 vs. NCBI nr
Match: KAG7024403.1 (hypothetical protein SDJN02_13217 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-24
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
          M+SSVC RPVI+AKS DGRGF+STRI+ IGS F+  RVS TDSRLL+SRICG RAS VDS
Sbjct: 1  MSSSVCFRPVIIAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]

BLAST of Lcy12g017810 vs. NCBI nr
Match: XP_022935899.1 (uncharacterized protein LOC111442664 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-24
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
          M+SSVC RPVI+AKS DGRGF+STRI+ IGS F+  RVS TDSRLL+SRICG RAS VDS
Sbjct: 1  MSSSVCFRPVIIAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]

BLAST of Lcy12g017810 vs. NCBI nr
Match: KAG6591516.1 (hypothetical protein SDJN03_13862, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-24
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MASSVCCRPVIMAKSTDGRGFASTRILPIGSGFSPPRVSSTDSRLLNSRICGVRASTVDS 60
          M+SSVC RPVI+AKS DGRGF+STRI+ IGS F+  RVS TDSRLL+SRICG RAS VDS
Sbjct: 1  MSSSVCFRPVIIAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

The following BLAST results are available for this feature:

BLAST of Lcy12g017810 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g017810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHL0	1.4e-24	80.77	uncharacterized protein LOC111477293 OS=Cucurbita maxima OX=3661 GN=LOC111477293...	[more]
A0A6J1F6R2	1.4e-24	80.77	uncharacterized protein LOC111442664 OS=Cucurbita moschata OX=3662 GN=LOC1114426...	[more]
A0A6J1CHM4	2.6e-23	73.08	uncharacterized protein LOC111011719 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3BVK1	4.9e-22	75.64	chaperone protein DnaJ OS=Cucumis melo OX=3656 GN=LOC103493730 PE=4 SV=1	[more]
A0A0A0L478	1.9e-21	74.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651790 PE=4 SV=1	[more]

BLAST of Lcy12g017810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649933.1	1.1e-39	57.45	hypothetical protein Csa_011967 [Cucumis sativus]	[more]
XP_022977132.1	2.8e-24	80.77	uncharacterized protein LOC111477293 [Cucurbita maxima]	[more]
KAG7024403.1	2.8e-24	80.77	hypothetical protein SDJN02_13217 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022935899.1	2.8e-24	80.77	uncharacterized protein LOC111442664 [Cucurbita moschata]	[more]
KAG6591516.1	2.8e-24	80.77	hypothetical protein SDJN03_13862, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy12g017810 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g017810.1	Lcy12g017810.1	mRNA