Lcy12g017480 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g017480
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	stromal cell-derived factor 2-like protein
Location	Chr12: 45097762 .. 45100938 (+)
RNA-Seq Expression	Lcy12g017480
Synteny	Lcy12g017480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATCTTTAAATCCAATTCTCAGTTCCACCGATCGAACCGAAATCCAAATCGCAAATTTTTTCGTTTCACGTCGTCGGTTTTGGCGAGTTCTTCCGATCAACCGTGGCTTCTTCAGGGTCCTCTGGTCTGTCTCGGAGAAAACCTTCGGCTTCCGCTTCTCCTCCGCCGTCAGCGCCGACGAGGATCGTCTACAGGGAGAGAGTTCCGCCGTCGCATTCCGATTTGCCTTTCTGGCAGCGTAACTGGTTCATCGCCTTGCTTTTCGTTATGGCCATCGGTTTCTTCGCTCTTGCGCTCTTTCTCTTCCTCGGTCTCGATCTCGACCATGGCTCCCCGTCGTCTGCCTCTGCTGCGTCCTCCTCCGAGGGCGTTGAGGTTTGAATCTGTTGACCTTGTTATGTGCTTTGTTCGTGTTTGCTTTGATTCGTTCGCGCTGGATTTATGATTTAGATATTTAGGTCATTAGATTAGTATGTCGATGCTTGGCGAAGAGACGATCTAATGAAATGAATTAGGGAATGTAATGGTTAACGAGTGAGGAAAACGACAATGTCGATTTGATTTGCTCTTAGGAAGCATGAAAGATGAAAGGACTTCACTTAAACGCAGACAGATGATGTATTGAAAATCAATCGAATAGTTCAACCTCGTTGTTCGTTTACTGAAACATACACGTGAAGCAATCTGTTAAGAAGATTTGGATTTTCTTTCTGGAAGAAATCCCCTGCTTGGCTTAGAATTGCTCAAATGAGATGAATGAGAGAAGATATAATGATTAACGTGTGATGAAAACGGCAATGTAGATTCAAATTGAACTTATAAGCATGAAGCAGAAGAAATCTGGTCAAACGCAGATAGATGATTCGTTGGAAATCGCTTAAACTTTTCAACCTTGTACTTTGTTTACTGAGAAGATGCACATGAATCCATCTCAAGCTGATTTGGATTTGCTTTCCTGTAATTTCATAATCTTACAGCATTTAAACATAGCTTAAATTGAGTAACTGGACCCTATACTTGGAGTTGTTATATTGATTGGTGTGTTTGTTCGACAGGTTACTTATGGAACAGTTCTAAAGCTAATGCACGAGAAAACTAAATTCCGTTTGCATTCCCATGACGTGCCTTATGGTTCTGGCAGTGGGCAACAGTCAGTCACCGGCTTTCCAAGTGTTGACGATTCCAATAGCTACTGGGTAAATCTCTCCCCCCTTGCGTTCTTACTGTTTAGTCTTTCCACATTTCTGTGTGGAACAAAAACTGTTATCGGTTTTTCCCGCCTAGAATTTTGATCTTGGTTTGCAATTGTAACGAGTTTATCATTTGCAGATTGTAAGACCTCAGCCTGGGACATCTGCAAAACAGGGAGACACCATTAAAAGTGGGACGATTATCAGATTGCAGCACATGAGGACAAGGAAATGGCTGCACAGCCACTTGCATGCATCCCCAATATCAGGAAATCTAGAGGTTATTGAATTTTGAAATTCGCATTTAACAAATTTTTTTGACAGTATAATCTCATAATCTAGAGGTAATTTCTTTGTATTGTCTGCTTGCTGCTTTGATGTTCCTCTCGTATTGAATTTTGTTGGTTGCTCGTGTCTTTACTTCATGAATCATGATGATTGAATTCATAAGGAATTCATTCTTTAAGTGCTTGTTTTGAACCCAAAATTGTTTGTGTATAGTGGAGGTTGAAATTTAATCTGTTTGCCATGCATGCTGAACTTGGGATTATATTCTTGAGAATTCAGTTATTTGTTTCTAATGGAAACCATAATGGACCATACATGCTTGATATTTTAGAACTAACATGTGCTTTCTCCATCATCTGTTCGGAGAATGTTCAGCTCAATTAGATGTACATGTACTAAATTTCTGGCATTTACAAACTCCAAAGATTGTTGGCTGAGTATTTGTATTCTGCTGTTAGAAATGTTTGCCCTGCGCTAGATTCTGTTGTTGAATTTCCCGAAGAAACTAAGACAAGTCGAGGTTGATCGCCACAATATTTTAAATAACAAATGTATTTCAAAATTTAATTTATAGTATGCTATTATTATTGTTTGACACCACTTTTCCTACGTTTTTTAAAACCATTTCCTTTCGTCTTACAAGATGCTGGTTCTTGTATGCCTACCATAATAACAAGTTTTAGTTCGTGAATTTTCATGTATGTCTCTTTTCCACCGACAAGTACTAAATCACTTTCTCTATTTTGACTGATATCTAAGTTTCCCGAGTCATTATGATGAGATGTTCGCTGTTTGACTTGTTTTGGCAACTGGCTTTGTTCCATATGTATATCTCATTTCATGGCCACGGGATATGAGGATTTTGGTTCCAAATTCTGTTCATGGTTCCCAATTCTCCATGCCAATTGATATACTTCATCATATGTGCTTGCTAATGGTTCTATTCTAAACTGCTTGCTGCAGGTTAGTTGCTTTGGTAGCGATGCCGATTCCGACACTGGCGATTACTGGAGGTGAGACTTATTTTCTTTAAAAAATGTATATTACTCATCTTGATACGTATGTGGTCCCTTACCTGCAAAGTTCTATAGGCTTATGATTGAAGGGAGTGGGAAGACATGGAAGCAAGAACAGAAAATTCGACTTCAGCACGTCGATACCGGTGGCTACCTACACAGTCATGACAAGAAGTACAGCCGCATAGCTGGGGGGCAGCAGGAGGTGAGAACAACGAACAATGTGGTCAATAATCAGAGAATGTAAAACATGCTTCTACGATAGTTATTTAGGAGTGACAATTCCTAACCATTTTCTTTGCATTCACAGATCTGTGGAGTCCGAGAAAAGCGAGCTGACAATATCTGGTTGGCCGCGGAAGGCGTTTACCTCCCTATTACTGAGACAAAGTAGAAAGATTGTGGTGAGATAACCATGTATTAACTTCCAAAATTAGGCTGCTAGGATTTTGAAATATTGAGAGATTGTTACCTGTTTTACATGAAGTTGAGCTGATTACTTGTCCGTAGATTGTTGCTATCCATTGATAGTATATTATTACATTACAAGTATATCCTGTATTTTGGGTAATGGTTCAACAAAGGGGAGAATGAAAATGACCTTCCATTTTCAAACAGCTCTGAATCCTTCTAGTGTGTGGCTATTTGTTTCAGTGACAGATGGGCCCTTGGAATATGTGT

mRNA sequence

TAAATCTTTAAATCCAATTCTCAGTTCCACCGATCGAACCGAAATCCAAATCGCAAATTTTTTCGTTTCACGTCGTCGGTTTTGGCGAGTTCTTCCGATCAACCGTGGCTTCTTCAGGGTCCTCTGGTCTGTCTCGGAGAAAACCTTCGGCTTCCGCTTCTCCTCCGCCGTCAGCGCCGACGAGGATCGTCTACAGGGAGAGAGTTCCGCCGTCGCATTCCGATTTGCCTTTCTGGCAGCGTAACTGGTTCATCGCCTTGCTTTTCGTTATGGCCATCGGTTTCTTCGCTCTTGCGCTCTTTCTCTTCCTCGGTCTCGATCTCGACCATGGCTCCCCGTCGTCTGCCTCTGCTGCGTCCTCCTCCGAGGGCGTTGAGGTTACTTATGGAACAGTTCTAAAGCTAATGCACGAGAAAACTAAATTCCGTTTGCATTCCCATGACGTGCCTTATGGTTCTGGCAGTGGGCAACAGTCAGTCACCGGCTTTCCAAGTGTTGACGATTCCAATAGCTACTGGATTGTAAGACCTCAGCCTGGGACATCTGCAAAACAGGGAGACACCATTAAAAGTGGGACGATTATCAGATTGCAGCACATGAGGACAAGGAAATGGCTGCACAGCCACTTGCATGCATCCCCAATATCAGGAAATCTAGAGGTTAGTTGCTTTGGTAGCGATGCCGATTCCGACACTGGCGATTACTGGAGGCTTATGATTGAAGGGAGTGGGAAGACATGGAAGCAAGAACAGAAAATTCGACTTCAGCACGTCGATACCGGTGGCTACCTACACAGTCATGACAAGAAGTACAGCCGCATAGCTGGGGGGCAGCAGGAGATCTGTGGAGTCCGAGAAAAGCGAGCTGACAATATCTGGTTGGCCGCGGAAGGCGTTTACCTCCCTATTACTGAGACAAAGTAGAAAGATTGTGGTGAGATAACCATGTATTAACTTCCAAAATTAGGCTGCTAGGATTTTGAAATATTGAGAGATTGTTACCTGTTTTACATGAAGTTGAGCTGATTACTTGTCCGTAGATTGTTGCTATCCATTGATAGTATATTATTACATTACAAGTATATCCTGTATTTTGGGTAATGGTTCAACAAAGGGGAGAATGAAAATGACCTTCCATTTTCAAACAGCTCTGAATCCTTCTAGTGTGTGGCTATTTGTTTCAGTGACAGATGGGCCCTTGGAATATGTGT

Coding sequence (CDS)

ATGGCCATCGGTTTCTTCGCTCTTGCGCTCTTTCTCTTCCTCGGTCTCGATCTCGACCATGGCTCCCCGTCGTCTGCCTCTGCTGCGTCCTCCTCCGAGGGCGTTGAGGTTACTTATGGAACAGTTCTAAAGCTAATGCACGAGAAAACTAAATTCCGTTTGCATTCCCATGACGTGCCTTATGGTTCTGGCAGTGGGCAACAGTCAGTCACCGGCTTTCCAAGTGTTGACGATTCCAATAGCTACTGGATTGTAAGACCTCAGCCTGGGACATCTGCAAAACAGGGAGACACCATTAAAAGTGGGACGATTATCAGATTGCAGCACATGAGGACAAGGAAATGGCTGCACAGCCACTTGCATGCATCCCCAATATCAGGAAATCTAGAGGTTAGTTGCTTTGGTAGCGATGCCGATTCCGACACTGGCGATTACTGGAGGCTTATGATTGAAGGGAGTGGGAAGACATGGAAGCAAGAACAGAAAATTCGACTTCAGCACGTCGATACCGGTGGCTACCTACACAGTCATGACAAGAAGTACAGCCGCATAGCTGGGGGGCAGCAGGAGATCTGTGGAGTCCGAGAAAAGCGAGCTGACAATATCTGGTTGGCCGCGGAAGGCGTTTACCTCCCTATTACTGAGACAAAGTAG

Protein sequence

MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKKYSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK

Homology

[Close]

BLAST of Lcy12g017480 vs. ExPASy Swiss-Prot
Match: Q93ZE8 (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana OX=3702 GN=SDF2 PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 8.7e-103
Identity = 169/216 (78.24%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MA+GFF LA+FL+L LD D G  S+++AAS  EGVE+TYG+ +KLMHEKTKFRLHSHDVP
Sbjct: 1   MALGFFCLAIFLYLSLDPDSGYTSASAAASGKEGVEITYGSAIKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP V DSNSYWIV+P PGT+ KQGD +KSG  IRLQHM+TRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHL 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D +SDTGD+W+L+IEGSGKTWKQ+Q++RLQH+DT GYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITET 217
           Y RIAGGQQE+CG+REK+ADNIWLAAEGVYLP+ E+
Sbjct: 181 YQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 216

[Close]

BLAST of Lcy12g017480 vs. ExPASy Swiss-Prot
Match: Q54P23 (Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0284847 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-42
Identity = 89/179 (49.72%), Postives = 111/179 (62.01%), Query Frame = 0


Query: 36  EVTYGTVLKLMHEKTKFRLHSHDVPYGS---GSGQQSVTGFPSVDDSNSYWIVRPQPGTS 95
           +VTYG+++KL H  T FRLHSH V YGS   GSGQQSVTGFP  DD+NS W+++   G  
Sbjct: 31  KVTYGSMVKLAHVPTNFRLHSHKVSYGSSGGGSGQQSVTGFPENDDTNSLWVIKGPHGNR 90

Query: 96  AKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGSDADSDTGDYWRLMIEG 155
             QG  +K+G IIRL H  T+K LHSHL  SP++   EVSCFG + + DTGD W +  E 
Sbjct: 91  VLQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCFGENGEGDTGDNWIVETE- 150

Query: 156 SGKTWKQEQKIRLQHVDTGGYLHS-HDKKYSRIAGGQQEICGVREKRADNIWLAAEGVY 211
           SGK W + Q +R +H DT  YL +    KY     GQ EI G + K  D  W   EG+Y
Sbjct: 151 SGKEWMRGQVVRFKHADTKTYLQAIESAKYQNPIPGQIEISGGKSKNEDTKWRTEEGIY 208

[Close]

BLAST of Lcy12g017480 vs. ExPASy Swiss-Prot
Match: Q9DCT5 (Stromal cell-derived factor 2 OS=Mus musculus OX=10090 GN=Sdf2 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.0e-39
Identity = 83/189 (43.92%), Postives = 117/189 (61.90%), Query Frame = 0


Query: 27  SAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDSNSYWIVR 86
           SA  +S    VT G+V+KL++ +   RLHSHDV YGSGSGQQSVTG  SVDDSNSYW +R
Sbjct: 14  SAVGASNMAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIR 73

Query: 87  PQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGSDADSDTGDYW 146
            +  T  ++G  IK G  IRL H+ T + LHSH   SP+SGN EVS FG + + D  D W
Sbjct: 74  GKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDW 133

Query: 147 RLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKKYSRIAGGQQEICGVREKRADNIWLAA 206
            ++   +G  W ++ ++R +H  T   L    ++Y R   GQ+E+ G+ +   +N W A 
Sbjct: 134 TVLC--NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAM 193

Query: 207 EGVYLPITE 216
           EG+++  +E
Sbjct: 194 EGIFMKPSE 200

[Close]

BLAST of Lcy12g017480 vs. ExPASy Swiss-Prot
Match: Q3SZ45 (Stromal cell-derived factor 2 OS=Bos taurus OX=9913 GN=SDF2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.8e-39
Identity = 83/189 (43.92%), Postives = 117/189 (61.90%), Query Frame = 0


Query: 27  SAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDSNSYWIVR 86
           SA  SS    VT G+V+KL++ +   RLHSHDV YGSGSGQQSVTG  SVDDSNSYW +R
Sbjct: 14  SAVGSSNLAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIR 73

Query: 87  PQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGSDADSDTGDYW 146
            +  T  ++G  I+ G  IRL H+ T + LHSH   SP+SGN EVS FG + + D  D W
Sbjct: 74  GKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDW 133

Query: 147 RLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKKYSRIAGGQQEICGVREKRADNIWLAA 206
            ++   +G  W ++ ++R +H  T   L    ++Y R   GQ+E+ G+ +   +N W A 
Sbjct: 134 TVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAM 193

Query: 207 EGVYLPITE 216
           EG+++  +E
Sbjct: 194 EGIFMKPSE 200

[Close]

BLAST of Lcy12g017480 vs. ExPASy Swiss-Prot
Match: Q99470 (Stromal cell-derived factor 2 OS=Homo sapiens OX=9606 GN=SDF2 PE=1 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 8.9e-39
Identity = 84/190 (44.21%), Postives = 120/190 (63.16%), Query Frame = 0


Query: 26  ASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDSNSYWIV 85
           ++  +SS GV VT G+V+KL++ +   RLHSHDV YGSGSGQQSVTG  SVDDSNSYW +
Sbjct: 14  SAVGASSLGV-VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRI 73

Query: 86  RPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGSDADSDTGDY 145
           R +  T  ++G  IK G  IRL H+ T + LHSH   SP+SGN EVS FG + + D  D 
Sbjct: 74  RGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDD 133

Query: 146 WRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKKYSRIAGGQQEICGVREKRADNIWLA 205
           W ++   +G  W ++ ++R +H  T   L    ++Y R   GQ+E+ G+ +   +N W A
Sbjct: 134 WTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKA 193

Query: 206 AEGVYLPITE 216
            EG+++  +E
Sbjct: 194 MEGIFMKPSE 200

[Close]

BLAST of Lcy12g017480 vs. ExPASy TrEMBL
Match: A0A6J1FL19 (stromal cell-derived factor 2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111446714 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 5.8e-118
Identity = 206/217 (94.93%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFFALALFLFLGLDLDHGS SSASAASSSEGVE+TYGTVLKLMHEKTKFRLHSHDVP
Sbjct: 1   MAIGFFALALFLFLGLDLDHGSLSSASAASSSEGVEITYGTVLKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+VDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHM+TRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPNVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMKTRKWLHSHL 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D+DSDTGDYWRLMIEGSGKTWKQEQ++RLQHVDT GYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGGDSDSDTGDYWRLMIEGSGKTWKQEQRVRLQHVDTNGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLPITETK
Sbjct: 181 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPITETK 217

[Close]

BLAST of Lcy12g017480 vs. ExPASy TrEMBL
Match: A0A1S3BVN9 (stromal cell-derived factor 2-like protein OS=Cucumis melo OX=3656 GN=LOC103493763 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 2.9e-117
Identity = 204/217 (94.01%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFFALALFLFLGLDLDHGSPSSASAA SSEGVE+TYG+VLKLMHEKTKFRLHSHDVP
Sbjct: 1   MAIGFFALALFLFLGLDLDHGSPSSASAA-SSEGVEITYGSVLKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+VDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPNVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D+DSD+GDYWRLMIEGSGKTWKQEQ++RLQH+DTGGYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGGDSDSDSGDYWRLMIEGSGKTWKQEQRVRLQHIDTGGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLP+TETK
Sbjct: 181 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTETK 216

[Close]

BLAST of Lcy12g017480 vs. ExPASy TrEMBL
Match: A0A6J1J1D3 (stromal cell-derived factor 2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111480440 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 4.9e-117
Identity = 204/217 (94.01%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFF+LALFLFLGLDLDHGS SSASAASSSEGVE+TYG VLKLMHEKTKFRLHSHDVP
Sbjct: 1   MAIGFFSLALFLFLGLDLDHGSLSSASAASSSEGVEITYGAVLKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+VDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHM+TRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPNVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMKTRKWLHSHL 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D+DSDTGDYWRLMIEGSGKTWKQEQ++RLQHVDT GYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGGDSDSDTGDYWRLMIEGSGKTWKQEQRVRLQHVDTNGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLPITETK
Sbjct: 181 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPITETK 217

[Close]

BLAST of Lcy12g017480 vs. ExPASy TrEMBL
Match: A0A0A0L145 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652070 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.6e-115
Identity = 202/217 (93.09%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFFALALFLFLGLDLDHGS SSASAA SSEGVE+TYG+VLKLMHEKTKFRLHSHDVP
Sbjct: 1   MAIGFFALALFLFLGLDLDHGSLSSASAA-SSEGVEITYGSVLKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+V+DSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSH+
Sbjct: 61  YGSGSGQQSVTGFPNVEDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHM 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG DADSDTGDYWRLMIEGSGKTWKQEQ++RLQH+DT GYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGGDADSDTGDYWRLMIEGSGKTWKQEQRVRLQHIDTSGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLP+TETK
Sbjct: 181 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTETK 216

[Close]

BLAST of Lcy12g017480 vs. ExPASy TrEMBL
Match: A0A6J1CHB7 (stromal cell-derived factor 2-like protein OS=Momordica charantia OX=3673 GN=LOC111011657 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.0e-114
Identity = 202/217 (93.09%), Postives = 211/217 (97.24%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFFALALFLFLGLDLD GS SSASAA SSEGVE+TYG+V+KLMHEKTKFRLHSHDVP
Sbjct: 1   MAIGFFALALFLFLGLDLDRGSLSSASAA-SSEGVEITYGSVIKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+VDDSNSYWIVRPQPG  AKQGDTIKSGTIIRLQHMRTRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPNVDDSNSYWIVRPQPGIGAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D+DSDTGDYWRLMIEGSGKTWKQEQKIRLQH+DTGGYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGGDSDSDTGDYWRLMIEGSGKTWKQEQKIRLQHIDTGGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLP+TETK
Sbjct: 181 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTETK 216

[Close]

BLAST of Lcy12g017480 vs. NCBI nr
Match: KAG7037641.1 (Stromal cell-derived factor 2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 433.3 bits (1113), Expect = 1.2e-117
Identity = 206/217 (94.93%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFFALALFLFLGLDLDHGS SSASAASSSEGVE+TYGTVLKLMHEKTKFRLHSHDVP
Sbjct: 89  MAIGFFALALFLFLGLDLDHGSLSSASAASSSEGVEITYGTVLKLMHEKTKFRLHSHDVP 148

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+VDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHM+TRKWLHSHL
Sbjct: 149 YGSGSGQQSVTGFPNVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMKTRKWLHSHL 208

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D+DSDTGDYWRLMIEGSGKTWKQEQ++RLQHVDT GYLHSHDKK
Sbjct: 209 HASPISGNLEVSCFGGDSDSDTGDYWRLMIEGSGKTWKQEQRVRLQHVDTNGYLHSHDKK 268

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLPITETK
Sbjct: 269 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPITETK 305

[Close]

BLAST of Lcy12g017480 vs. NCBI nr
Match: KAG6608288.1 (Stromal cell-derived factor 2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433.3 bits (1113), Expect = 1.2e-117
Identity = 206/217 (94.93%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFFALALFLFLGLDLDHGS SSASAASSSEGVE+TYGTVLKLMHEKTKFRLHSHDVP
Sbjct: 78  MAIGFFALALFLFLGLDLDHGSLSSASAASSSEGVEITYGTVLKLMHEKTKFRLHSHDVP 137

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+VDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHM+TRKWLHSHL
Sbjct: 138 YGSGSGQQSVTGFPNVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMKTRKWLHSHL 197

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D+DSDTGDYWRLMIEGSGKTWKQEQ++RLQHVDT GYLHSHDKK
Sbjct: 198 HASPISGNLEVSCFGGDSDSDTGDYWRLMIEGSGKTWKQEQRVRLQHVDTNGYLHSHDKK 257

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLPITETK
Sbjct: 258 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPITETK 294

[Close]

BLAST of Lcy12g017480 vs. NCBI nr
Match: XP_022941416.1 (stromal cell-derived factor 2-like protein [Cucurbita moschata] >XP_023524368.1 stromal cell-derived factor 2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 433.3 bits (1113), Expect = 1.2e-117
Identity = 206/217 (94.93%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFFALALFLFLGLDLDHGS SSASAASSSEGVE+TYGTVLKLMHEKTKFRLHSHDVP
Sbjct: 1   MAIGFFALALFLFLGLDLDHGSLSSASAASSSEGVEITYGTVLKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+VDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHM+TRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPNVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMKTRKWLHSHL 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D+DSDTGDYWRLMIEGSGKTWKQEQ++RLQHVDT GYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGGDSDSDTGDYWRLMIEGSGKTWKQEQRVRLQHVDTNGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLPITETK
Sbjct: 181 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPITETK 217

[Close]

BLAST of Lcy12g017480 vs. NCBI nr
Match: XP_038896836.1 (stromal cell-derived factor 2-like protein [Benincasa hispida])

HSP 1 Score: 431.8 bits (1109), Expect = 3.5e-117
Identity = 204/217 (94.01%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFFALALFLFLGLDLDHGSPSSAS A+SSEGVE+TYGT+LKLMHEKTKFRLHSHDVP
Sbjct: 1   MAIGFFALALFLFLGLDLDHGSPSSAS-ATSSEGVEITYGTILKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+VDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPNVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D+DSDTGDYWRLMIEGSGKTW+QEQ++RLQHVDTGGYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGGDSDSDTGDYWRLMIEGSGKTWRQEQRVRLQHVDTGGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLP+TETK
Sbjct: 181 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTETK 216

[Close]

BLAST of Lcy12g017480 vs. NCBI nr
Match: XP_008452866.1 (PREDICTED: stromal cell-derived factor 2-like protein [Cucumis melo])

HSP 1 Score: 431.0 bits (1107), Expect = 6.0e-117
Identity = 204/217 (94.01%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MAIGFFALALFLFLGLDLDHGSPSSASAA SSEGVE+TYG+VLKLMHEKTKFRLHSHDVP
Sbjct: 1   MAIGFFALALFLFLGLDLDHGSPSSASAA-SSEGVEITYGSVLKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP+VDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPNVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D+DSD+GDYWRLMIEGSGKTWKQEQ++RLQH+DTGGYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGGDSDSDSGDYWRLMIEGSGKTWKQEQRVRLQHIDTGGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITETK 218
           YSRIAGGQQE+CGVREKRADN+WLAAEGVYLP+TETK
Sbjct: 181 YSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTETK 216

[Close]

BLAST of Lcy12g017480 vs. TAIR 10
Match: AT2G25110.1 (stromal cell-derived factor 2-like protein precursor )

HSP 1 Score: 374.4 bits (960), Expect = 6.2e-104
Identity = 169/216 (78.24%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MAIGFFALALFLFLGLDLDHGSPSSASAASSSEGVEVTYGTVLKLMHEKTKFRLHSHDVP 60
           MA+GFF LA+FL+L LD D G  S+++AAS  EGVE+TYG+ +KLMHEKTKFRLHSHDVP
Sbjct: 1   MALGFFCLAIFLYLSLDPDSGYTSASAAASGKEGVEITYGSAIKLMHEKTKFRLHSHDVP 60

Query: 61  YGSGSGQQSVTGFPSVDDSNSYWIVRPQPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHL 120
           YGSGSGQQSVTGFP V DSNSYWIV+P PGT+ KQGD +KSG  IRLQHM+TRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHL 120

Query: 121 HASPISGNLEVSCFGSDADSDTGDYWRLMIEGSGKTWKQEQKIRLQHVDTGGYLHSHDKK 180
           HASPISGNLEVSCFG D +SDTGD+W+L+IEGSGKTWKQ+Q++RLQH+DT GYLHSHDKK
Sbjct: 121 HASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKK 180

Query: 181 YSRIAGGQQEICGVREKRADNIWLAAEGVYLPITET 217
           Y RIAGGQQE+CG+REK+ADNIWLAAEGVYLP+ E+
Sbjct: 181 YQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 216

The following BLAST results are available for this feature:

BLAST of Lcy12g017480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZE8	8.7e-103	78.24	Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana OX=3702 GN=SD...	[more]
Q54P23	1.7e-42	49.72	Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum OX=44689 ...	[more]
Q9DCT5	4.0e-39	43.92	Stromal cell-derived factor 2 OS=Mus musculus OX=10090 GN=Sdf2 PE=1 SV=1	[more]
Q3SZ45	6.8e-39	43.92	Stromal cell-derived factor 2 OS=Bos taurus OX=9913 GN=SDF2 PE=2 SV=1	[more]
Q99470	8.9e-39	44.21	Stromal cell-derived factor 2 OS=Homo sapiens OX=9606 GN=SDF2 PE=1 SV=2	[more]

BLAST of Lcy12g017480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FL19	5.8e-118	94.93	stromal cell-derived factor 2-like protein OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S3BVN9	2.9e-117	94.01	stromal cell-derived factor 2-like protein OS=Cucumis melo OX=3656 GN=LOC1034937...	[more]
A0A6J1J1D3	4.9e-117	94.01	stromal cell-derived factor 2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0L145	1.6e-115	93.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652070 PE=4 SV=1	[more]
A0A6J1CHB7	1.0e-114	93.09	stromal cell-derived factor 2-like protein OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Lcy12g017480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037641.1	1.2e-117	94.93	Stromal cell-derived factor 2-like protein, partial [Cucurbita argyrosperma subs...	[more]
KAG6608288.1	1.2e-117	94.93	Stromal cell-derived factor 2-like protein, partial [Cucurbita argyrosperma subs...	[more]
XP_022941416.1	1.2e-117	94.93	stromal cell-derived factor 2-like protein [Cucurbita moschata] >XP_023524368.1 ...	[more]
XP_038896836.1	3.5e-117	94.01	stromal cell-derived factor 2-like protein [Benincasa hispida]	[more]
XP_008452866.1	6.0e-117	94.01	PREDICTED: stromal cell-derived factor 2-like protein [Cucumis melo]	[more]

BLAST of Lcy12g017480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25110.1	6.2e-104	78.24	stromal cell-derived factor 2-like protein precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016093	MIR motif	SMART	SM00472	mir_2	coord: 154..208 e-value: 1.3E-14 score: 64.6 coord: 34..88 e-value: 4.2E-9 score: 46.2 coord: 96..151 e-value: 2.5E-8 score: 43.7
IPR016093	MIR motif	PFAM	PF02815	MIR	coord: 68..138 e-value: 4.0E-8 score: 33.3
IPR016093	MIR motif	PROSITE	PS50919	MIR	coord: 154..208 score: 11.906253
IPR016093	MIR motif	PROSITE	PS50919	MIR	coord: 34..88 score: 14.573799
IPR016093	MIR motif	PROSITE	PS50919	MIR	coord: 96..151 score: 14.647218
None	No IPR available	GENE3D	2.80.10.50		coord: 21..217 e-value: 2.1E-72 score: 244.7
None	No IPR available	PANTHER	PTHR46809:SF7	MIR MOTIF, GLYCOSYLTRANSFERASE 39-LIKE PROTEIN-RELATED	coord: 1..217
None	No IPR available	PANTHER	PTHR46809	STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN	coord: 1..217
IPR036300	Mir domain superfamily	SUPERFAMILY	82109	MIR domain	coord: 32..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g017480.1	Lcy12g017480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035269	protein O-linked mannosylation
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity