Lcy12g016730 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g016730
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 44537095 .. 44537724 (-)
RNA-Seq Expression	Lcy12g016730
Synteny	Lcy12g016730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTTGATCGCATGATCGGCTTCAAAGTTGACACTCGGCAAGTGGTTTCTGATCCCTGGTGGGAAAAAAAACACTTTTCAGATATGAGAGAATATAGAGATTGAGCAAGAAATGGGAAAATCAGAGTTGGGGTTTTGGATTACAGTGTTGTTGTTGAAGTGCTCGGGTCGTTCGCGAACTTTGTACTTGTCCTTGTTTCGACAACTCTCTATTGTCTTTCAAAAAGGCCTAATGATAATAATTTGGATGAAGAGATTAAATCCAATGCATTTACCTTTTGTCAGGTCTGTTCTGCATCCAAACATATAAAAACAATCCTAAGTGCAACTGAATTCTTGCGAGCTCCTCGTCGAATCTACACTCAATCCCGCCACGAACTGTGTTTATCCCCACGACAAATAACTGCCCACGTCAGTGAAACTGATTCATGTGTTGGAGTTTCTCCAAAGATTCCAATGGGAAATTATGTGGCTCAAGTCATCTTGTGTTCAGCTTATGAGCAACTATTTACCAGCAACAGCAAAATTTCTGATATAAGGACAACTATGGATCCAACTTTTCAACAAAAGAATACCATCTCCATCTCAACTACAAGTAGTCCCCACAAGAGGAAGTTCCATCTTTGA

mRNA sequence

ATGCAGTTTGATCGCATGATCGGCTTCAAAGTTGACACTCGGCAAGTGGTTTCTGATCCCTGTGTTGTTGTTGAAGTGCTCGGGTCGTTCGCGAACTTTGTACTTGTCCTTGTTTCGACAACTCTCTATTGTCTTTCAAAAAGGCCTAATGATAATAATTTGGATGAAGAGATTAAATCCAATGCATTTACCTTTTGTCAGGTCTGTTCTGCATCCAAACATATAAAAACAATCCTAAGTGCAACTGAATTCTTGCGAGCTCCTCGTCGAATCTACACTCAATCCCGCCACGAACTGTGTTTATCCCCACGACAAATAACTGCCCACGTCAGTGAAACTGATTCATGTGTTGGAGTTTCTCCAAAGATTCCAATGGGAAATTATGTGGCTCAAGTCATCTTGTGTTCAGCTTATGAGCAACTATTTACCAGCAACAGCAAAATTTCTGATATAAGGACAACTATGGATCCAACTTTTCAACAAAAGAATACCATCTCCATCTCAACTACAAGTAGTCCCCACAAGAGGAAGTTCCATCTTTGA

Coding sequence (CDS)

ATGCAGTTTGATCGCATGATCGGCTTCAAAGTTGACACTCGGCAAGTGGTTTCTGATCCCTGTGTTGTTGTTGAAGTGCTCGGGTCGTTCGCGAACTTTGTACTTGTCCTTGTTTCGACAACTCTCTATTGTCTTTCAAAAAGGCCTAATGATAATAATTTGGATGAAGAGATTAAATCCAATGCATTTACCTTTTGTCAGGTCTGTTCTGCATCCAAACATATAAAAACAATCCTAAGTGCAACTGAATTCTTGCGAGCTCCTCGTCGAATCTACACTCAATCCCGCCACGAACTGTGTTTATCCCCACGACAAATAACTGCCCACGTCAGTGAAACTGATTCATGTGTTGGAGTTTCTCCAAAGATTCCAATGGGAAATTATGTGGCTCAAGTCATCTTGTGTTCAGCTTATGAGCAACTATTTACCAGCAACAGCAAAATTTCTGATATAAGGACAACTATGGATCCAACTTTTCAACAAAAGAATACCATCTCCATCTCAACTACAAGTAGTCCCCACAAGAGGAAGTTCCATCTTTGA

Protein sequence

MQFDRMIGFKVDTRQVVSDPCVVVEVLGSFANFVLVLVSTTLYCLSKRPNDNNLDEEIKSNAFTFCQVCSASKHIKTILSATEFLRAPRRIYTQSRHELCLSPRQITAHVSETDSCVGVSPKIPMGNYVAQVILCSAYEQLFTSNSKISDIRTTMDPTFQQKNTISISTTSSPHKRKFHL

Homology

[Close]

BLAST of Lcy12g016730 vs. ExPASy TrEMBL
Match: A0A0A0LHC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878920 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 57/127 (44.88%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 23  VVEVLGSFANFVLVLVSTTLYCLSKRPNDNNLDEEIKSNAFTFCQVCSASKHIKTILSAT 82
           V E L S A F  VL STTLYC+S RPN+NNL+EE+KSN   F   CS  K I       
Sbjct: 8   VHEQLMSIATFDSVLASTTLYCVSTRPNNNNLEEEVKSNGLAF---CSTFKCIIQSQVQN 67

Query: 83  EFLRAPRRIY------TQSRHELCLSPRQITAHVSETDSCVGVSPKIPMGNYVAQVILCS 142
           EFL++   IY         ++++CLSPRQ +AH  ET   + VSPKI M        LCS
Sbjct: 68  EFLQSLHSIYKCPLKTLNPQNKVCLSPRQTSAHACETGPYIRVSPKILMEK------LCS 125

Query: 143 AYEQLFT 144
           A   L++
Sbjct: 128 ASHFLYS 125

[Close]

BLAST of Lcy12g016730 vs. NCBI nr
Match: KGN60122.1 (hypothetical protein Csa_000931 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-13
Identity = 57/127 (44.88%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 23  VVEVLGSFANFVLVLVSTTLYCLSKRPNDNNLDEEIKSNAFTFCQVCSASKHIKTILSAT 82
           V E L S A F  VL STTLYC+S RPN+NNL+EE+KSN   F   CS  K I       
Sbjct: 8   VHEQLMSIATFDSVLASTTLYCVSTRPNNNNLEEEVKSNGLAF---CSTFKCIIQSQVQN 67

Query: 83  EFLRAPRRIY------TQSRHELCLSPRQITAHVSETDSCVGVSPKIPMGNYVAQVILCS 142
           EFL++   IY         ++++CLSPRQ +AH  ET   + VSPKI M        LCS
Sbjct: 68  EFLQSLHSIYKCPLKTLNPQNKVCLSPRQTSAHACETGPYIRVSPKILMEK------LCS 125

Query: 143 AYEQLFT 144
           A   L++
Sbjct: 128 ASHFLYS 125

The following BLAST results are available for this feature:

BLAST of Lcy12g016730 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g016730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHC1	1.1e-13	44.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878920 PE=4 SV=1	[more]

BLAST of Lcy12g016730 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60122.1	2.3e-13	44.88	hypothetical protein Csa_000931 [Cucumis sativus]	[more]

BLAST of Lcy12g016730 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g016730.1	Lcy12g016730.1	mRNA