Lcy12g015990 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g015990
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr12: 43906176 .. 43906646 (+)
RNA-Seq Expression	Lcy12g015990
Synteny	Lcy12g015990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACATTAAACTCATCGACCCTTTTGATTTTTGGTTCTAATATTCAAAGTTTTGGCTTCAATTTTGGGCTTCAATCGGCAAATGGGAATCAAATGGCGCAATTCACGTAGCCAAAGCATCAGGCTGGGTCAGAGCTGTGTTTCTTCAAACGAACAGGAAAGCAAACGAGTCGGATGGCTGATTTTGTGGCAAAAAATCAAGAAGGAGAAGAAGAAAATCTTCAGTTCTTCTGTTGAATTTCGTTCTTCTTATAATCCAAATGCTTATGAGTTGAATTTTGATCAAGGAATTGGATGCTCTGAGCCTGATAATCTCTCCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCAATCGTCTCCAGGAACTTGAGATTGTTGGATTGATTTTTCTTTTTCTTTTTCTTTTGTAAATTTTCAATGGAATTGGTTGATGGGTTTTGTGTAATTTTTGTGACCCATTTTCGAAATTCC

mRNA sequence

TTACATTAAACTCATCGACCCTTTTGATTTTTGGTTCTAATATTCAAAGTTTTGGCTTCAATTTTGGGCTTCAATCGGCAAATGGGAATCAAATGGCGCAATTCACGTAGCCAAAGCATCAGGCTGGGTCAGAGCTGTGTTTCTTCAAACGAACAGGAAAGCAAACGAGTCGGATGGCTGATTTTGTGGCAAAAAATCAAGAAGGAGAAGAAGAAAATCTTCAGTTCTTCTGTTGAATTTCGTTCTTCTTATAATCCAAATGCTTATGAGTTGAATTTTGATCAAGGAATTGGATGCTCTGAGCCTGATAATCTCTCCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCAATCGTCTCCAGGAACTTGAGATTGTTGGATTGATTTTTCTTTTTCTTTTTCTTTTGTAAATTTTCAATGGAATTGGTTGATGGGTTTTGTGTAATTTTTGTGACCCATTTTCGAAATTCC

Coding sequence (CDS)

ATGGGAATCAAATGGCGCAATTCACGTAGCCAAAGCATCAGGCTGGGTCAGAGCTGTGTTTCTTCAAACGAACAGGAAAGCAAACGAGTCGGATGGCTGATTTTGTGGCAAAAAATCAAGAAGGAGAAGAAGAAAATCTTCAGTTCTTCTGTTGAATTTCGTTCTTCTTATAATCCAAATGCTTATGAGTTGAATTTTGATCAAGGAATTGGATGCTCTGAGCCTGATAATCTCTCCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCAATCGTCTCCAGGAACTTGAGATTGTTGGATTGA

Protein sequence

MGIKWRNSRSQSIRLGQSCVSSNEQESKRVGWLILWQKIKKEKKKIFSSSVEFRSSYNPNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD

Homology

[Close]

BLAST of Lcy12g015990 vs. ExPASy TrEMBL
Match: A0A0A0LJH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.1e-38
Identity = 86/101 (85.15%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSNEQESKRVGWLILWQKIKKEKKKIFS-SSVEFRSSYNP 60
           MG+KWRNSRSQSIRLGQSCVSSNEQESKR+GW ILW+K+KKEK+K+FS SSVE RSSYNP
Sbjct: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 60

Query: 61  NAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           NAY LNFD+    SEPDNLSRSFSARFADPSIVSRNLRLLD
Sbjct: 61  NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101

[Close]

BLAST of Lcy12g015990 vs. ExPASy TrEMBL
Match: A0A6J1F7R9 (uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC111442916 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.1e-34
Identity = 82/102 (80.39%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSNEQESKRV-GWLILWQKIKKEKKKIFS-SSVEFRSSYN 60
           MGIKWRNSRSQSIRLGQSC SSNEQESKR+ GW ILWQK KKEK++IFS SSVE RSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF+Q    S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Lcy12g015990 vs. ExPASy TrEMBL
Match: A0A251RD41 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G454200 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 61/105 (58.10%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQSCVSSNEQESKRVGWLILWQKIKKE-KKKIFSSS--VEFRSS 60
           MGIK W NSRSQS+RLGQ  + SN  +  R GW   W+K K + KKK FSSS      +S
Sbjct: 1   MGIKEWCNSRSQSMRLGQPYMPSNYNKPDRPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNPNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLR-LLD 101
           Y+P  Y  NFD+G+G  EPDNLSRSFSARFADPS++  N R LLD
Sbjct: 61  YDPKTYSKNFDRGMGSMEPDNLSRSFSARFADPSMILHNNRNLLD 105

[Close]

BLAST of Lcy12g015990 vs. ExPASy TrEMBL
Match: A0A6J5TRF8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8866 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 61/105 (58.10%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQSCVSSNEQESKRVGWLILWQKIKKE-KKKIFSSS--VEFRSS 60
           MGIK W NSRSQSIRLGQ  +SSN  +  + GW   W+K K + KKK FSSS      +S
Sbjct: 1   MGIKEWCNSRSQSIRLGQPYMSSNYNKPDQPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNPNAYELNFDQGIGCSEPDNLSRSFSARFADPS-IVSRNLRLLD 101
           Y+P  Y  NFD G+G  EPDNLSR FSARFADPS I+ +N  LLD
Sbjct: 61  YDPKTYSKNFDPGMGSMEPDNLSRCFSARFADPSMILHKNRNLLD 105

[Close]

BLAST of Lcy12g015990 vs. ExPASy TrEMBL
Match: A0A2N9H2U8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33985 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MGI-KWRNSRSQSIRLGQSCVSSNEQESKRVG--WLILWQKIKKEKKKIFSSSVEFRSSY 60
           MGI KW N RS+SI+LG+S   SN     +    W + W+KIK++KKK  SS +  +++Y
Sbjct: 1   MGIKKWLNPRSESIQLGRSYEQSNYNNKTQTQPVWHVFWKKIKRDKKKFPSSHITMQANY 60

Query: 61  NPNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           +P  Y  NFD+G+G  EPDNLSRSFSARFADPS V R   LLD
Sbjct: 61  DPETYSKNFDKGMGSLEPDNLSRSFSARFADPSSVLRMHSLLD 103

[Close]

BLAST of Lcy12g015990 vs. NCBI nr
Match: KGN60340.2 (hypothetical protein Csa_000895 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 4.4e-38
Identity = 86/101 (85.15%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1    MGIKWRNSRSQSIRLGQSCVSSNEQESKRVGWLILWQKIKKEKKKIFS-SSVEFRSSYNP 60
            MG+KWRNSRSQSIRLGQSCVSSNEQESKR+GW ILW+K+KKEK+K+FS SSVE RSSYNP
Sbjct: 1030 MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 1089

Query: 61   NAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
            NAY LNFD+    SEPDNLSRSFSARFADPSIVSRNLRLLD
Sbjct: 1090 NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 1130

[Close]

BLAST of Lcy12g015990 vs. NCBI nr
Match: XP_023536137.1 (uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 8.5e-34
Identity = 82/102 (80.39%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSNEQESKR-VGWLILWQKIKKEKKKIFS-SSVEFRSSYN 60
           MGIKWRNSRSQSIRLGQSC SSNEQESKR +GW ILWQK KKEK++IFS SSVE RSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF+Q    S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Lcy12g015990 vs. NCBI nr
Match: XP_022936244.1 (uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothetical protein SDJN02_13350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 8.5e-34
Identity = 82/102 (80.39%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSNEQESKRV-GWLILWQKIKKEKKKIFS-SSVEFRSSYN 60
           MGIKWRNSRSQSIRLGQSC SSNEQESKR+ GW ILWQK KKEK++IFS SSVE RSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF+Q    S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Lcy12g015990 vs. NCBI nr
Match: KAG6591653.1 (hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 5.5e-33
Identity = 81/102 (79.41%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSNEQESKRV-GWLILWQKIKKEKKKIFS-SSVEFRSSYN 60
           MGIKWRNSRSQSIRLGQSC S NEQESKR+ GW ILWQK KKEK++IFS SSVE RSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSWNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF+Q    S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Lcy12g015990 vs. NCBI nr
Match: KAF3446462.1 (hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis])

HSP 1 Score: 104.4 bits (259), Expect = 5.9e-19
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQSCV-SSNEQESKRVGWLILWQKIKKEK-KKIFSSSVEFRSSY 60
           MGIK W  S SQSIRLGQ+ + S+N++E  + GW  +W+KIK++K KK+FSS V  ++SY
Sbjct: 1   MGIKEWYKSGSQSIRLGQNYMQSNNDREQIQDGWRKVWRKIKRDKNKKVFSSPVTLQASY 60

Query: 61  NPNAYELNFDQGIGCSEPDNLSRSFSARFADPS-IVSRNLRLLD 101
           +PN Y  NFDQG+  +EPDNLSRSFSARFADP+ I      LLD
Sbjct: 61  DPNTYSKNFDQGMVWTEPDNLSRSFSARFADPNKIFPTTFSLLD 104

[Close]

BLAST of Lcy12g015990 vs. TAIR 10
Match: AT2G25735.1 (unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 0


Query: 7   NSRSQSIRLGQSCVSSNEQESKR------VGWLILWQKIKKEKKKIFSSSVEFRSSYNPN 66
           +S  ++I LG+   S  EQ+  +        W +L  K+K    +  S+ V    +Y P 
Sbjct: 20  SSHRETIVLGRYSKSCREQKQHQRRERLLPKWKVLLMKLKLLPSRASSTKV---VAYEPC 79

Query: 67  AYELNFDQGIGC---SEPDNLSRSFSARFADPSIVSRNLRLL 100
            Y LNFDQG G     EP+NLSRSFS RFADP+ +     LL
Sbjct: 80  DYSLNFDQGPGWHDHDEPENLSRSFSCRFADPTRIRETRFLL 118

The following BLAST results are available for this feature:

BLAST of Lcy12g015990 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g015990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJH9	2.1e-38	85.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1	[more]
A0A6J1F7R9	4.1e-34	80.39	uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC1114429...	[more]
A0A251RD41	1.1e-18	58.10	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G454200 PE=4 SV=1	[more]
A0A6J5TRF8	2.4e-18	58.10	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8866 PE=4 SV...	[more]
A0A2N9H2U8	2.4e-18	53.40	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33985 PE=4 SV=1	[more]

BLAST of Lcy12g015990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60340.2	4.4e-38	85.15	hypothetical protein Csa_000895 [Cucumis sativus]	[more]
XP_023536137.1	8.5e-34	80.39	uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]	[more]
XP_022936244.1	8.5e-34	80.39	uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothet...	[more]
KAG6591653.1	5.5e-33	79.41	hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3446462.1	5.9e-19	57.69	hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis]	[more]

BLAST of Lcy12g015990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25735.1	1.9e-07	38.24	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168:SF35	SUBFAMILY NOT NAMED	coord: 8..99
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 8..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g015990.1	Lcy12g015990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity