Lcy12g015940 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g015940
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr12: 43865841 .. 43867146 (-)
RNA-Seq Expression	Lcy12g015940
Synteny	Lcy12g015940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTAACTTGGAACAGAGTTTTGGCATTGGCCAAAAGCGGCTCCTCAAGGATTCCACTAGGGCTCCCGGAAGTTCGTTATCAACTTGGTTCCCGTAGATTCGTTTCTACTGATCAGTCGAATTCGATTTCGAATCCTCTGCTTCTCAGGTTGCTCCAGGAGCCAAGTTCGTCTGTCAAATCCGTGCTCGATTCGCAGGAAAATGCTTTTCTCTGTAGCTCCCAACTTTCCTGGAAAGCCCTCGTTAAGTCTCTCATATCGTCTTCGTCGCCAAAGAAAGCTCTGCTGGTTACTTTCCCAACCCTCTCTATTCCTTTGTTGTTTGTGTAGTTGATTGTTGAATGAATCTAGGGAAAGGAAAAGCTATGGATGCTGTGATTCGGTAGGTAGTATCCGAAATGGAGGGATTATGTAAATTGATCTTGCATGATCCCCTAACATCGGTCCGAATTAGGAGTTAGATTCGTCGTTATCGATTGAACAATGTTCTGTAGAAATTGGTTTCGTGTTTCAACTCTCTCTTTTCTTTAAATGGCTTCAGTGATTGGGAAGTTTATGTTTTAGCGATCATGGATATCTCAGGATTGGCAATTTTTGCCTTTGCCAGGTTTTGGAATGGAGATTGGAGAAAATGAGCAAAGAAAATGAGAGGGATCCTGATTTTTACATCGAACTGATACGTCTATGCGGAGAGCTTCAAAATGTCCCTCTTGCAATGCGTGTGTTCACTGCTATGGAATTTCAAGGAGTTACACCCACAGTAACTGCTTTCAATTCACTTATAGAGGCCTGTTTATCTTCTCATAATATGATAACTGCCTTAAGCATATTTGAAGTAATGAAAAACTCTGAAAGTTTTAAACCCAATGCTGACACTTTCACTTCTTTCATTTTGGCATTTGCCATATTGCACGATGTTGATTCCATGCAAGCATGGTATTCGGCCAAAAAAGCTTTTGGATTCTCTCCTGACCTTCGAACCTATGAAGCTCTTATACATGGTAGTATTCAATCAAAGTGCTTTGATTTTGCTGTTAGATGTTATGAGGAAATGATGTCATCTGGCATTGTGCCCAACACAATCATATTGGAGAATATGCTTGAAGGGCTCTGCAAGAGGAAAAATTTGGATGAAGTGAAGAAGTTCTTAAATGTTGTGTTGGACAAAGGATGGGAGATTAATTGGAATGTAGCAGAAAAGTTCATTCGAATATGTTTTGGATATGAGGAGGTGGAGGGGATGGAGGAGTTTCTCTCCAAGCTTAATAAATCGAATCTGGGTCCCGATGGCTTATCGTCGTAA

mRNA sequence

ATGGCGTTAACTTGGAACAGAGTTTTGGCATTGGCCAAAAGCGGCTCCTCAAGGATTCCACTAGGGCTCCCGGAAGTTCGTTATCAACTTGGTTCCCGTAGATTCGTTTCTACTGATCAGTCGAATTCGATTTCGAATCCTCTGCTTCTCAGGTTGCTCCAGGAGCCAAGTTCGTCTGTCAAATCCGTGCTCGATTCGCAGGAAAATGCTTTTCTCTGTAGCTCCCAACTTTCCTGGAAAGCCCTCGTTAAGTCTCTCATATCGTCTTCGTCGCCAAAGAAAGCTCTGCTGGTTTTGGAATGGAGATTGGAGAAAATGAGCAAAGAAAATGAGAGGGATCCTGATTTTTACATCGAACTGATACGTCTATGCGGAGAGCTTCAAAATGTCCCTCTTGCAATGCGTGTGTTCACTGCTATGGAATTTCAAGGAGTTACACCCACAGTAACTGCTTTCAATTCACTTATAGAGGCCTGTTTATCTTCTCATAATATGATAACTGCCTTAAGCATATTTGAAGTAATGAAAAACTCTGAAAGTTTTAAACCCAATGCTGACACTTTCACTTCTTTCATTTTGGCATTTGCCATATTGCACGATGTTGATTCCATGCAAGCATGGTATTCGGCCAAAAAAGCTTTTGGATTCTCTCCTGACCTTCGAACCTATGAAGCTCTTATACATGGTAGTATTCAATCAAAGTGCTTTGATTTTGCTGTTAGATGTTATGAGGAAATGATGTCATCTGGCATTGTGCCCAACACAATCATATTGGAGAATATGCTTGAAGGGCTCTGCAAGAGGAAAAATTTGGATGAAGTGAAGAAGTTCTTAAATGTTGTGTTGGACAAAGGATGGGAGATTAATTGGAATGTAGCAGAAAAGTTCATTCGAATATGTTTTGGATATGAGGAGGTGGAGGGGATGGAGGAGTTTCTCTCCAAGCTTAATAAATCGAATCTGGGTCCCGATGGCTTATCGTCGTAA

Coding sequence (CDS)

ATGGCGTTAACTTGGAACAGAGTTTTGGCATTGGCCAAAAGCGGCTCCTCAAGGATTCCACTAGGGCTCCCGGAAGTTCGTTATCAACTTGGTTCCCGTAGATTCGTTTCTACTGATCAGTCGAATTCGATTTCGAATCCTCTGCTTCTCAGGTTGCTCCAGGAGCCAAGTTCGTCTGTCAAATCCGTGCTCGATTCGCAGGAAAATGCTTTTCTCTGTAGCTCCCAACTTTCCTGGAAAGCCCTCGTTAAGTCTCTCATATCGTCTTCGTCGCCAAAGAAAGCTCTGCTGGTTTTGGAATGGAGATTGGAGAAAATGAGCAAAGAAAATGAGAGGGATCCTGATTTTTACATCGAACTGATACGTCTATGCGGAGAGCTTCAAAATGTCCCTCTTGCAATGCGTGTGTTCACTGCTATGGAATTTCAAGGAGTTACACCCACAGTAACTGCTTTCAATTCACTTATAGAGGCCTGTTTATCTTCTCATAATATGATAACTGCCTTAAGCATATTTGAAGTAATGAAAAACTCTGAAAGTTTTAAACCCAATGCTGACACTTTCACTTCTTTCATTTTGGCATTTGCCATATTGCACGATGTTGATTCCATGCAAGCATGGTATTCGGCCAAAAAAGCTTTTGGATTCTCTCCTGACCTTCGAACCTATGAAGCTCTTATACATGGTAGTATTCAATCAAAGTGCTTTGATTTTGCTGTTAGATGTTATGAGGAAATGATGTCATCTGGCATTGTGCCCAACACAATCATATTGGAGAATATGCTTGAAGGGCTCTGCAAGAGGAAAAATTTGGATGAAGTGAAGAAGTTCTTAAATGTTGTGTTGGACAAAGGATGGGAGATTAATTGGAATGTAGCAGAAAAGTTCATTCGAATATGTTTTGGATATGAGGAGGTGGAGGGGATGGAGGAGTTTCTCTCCAAGCTTAATAAATCGAATCTGGGTCCCGATGGCTTATCGTCGTAA

Protein sequence

MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSVKSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIELIRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSESFKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAVRCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRICFGYEEVEGMEEFLSKLNKSNLGPDGLSS

Homology

[Close]

BLAST of Lcy12g015940 vs. ExPASy Swiss-Prot
Match: Q9M302 (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-14
Identity = 50/203 (24.63%), Postives = 90/203 (44.33%), Query Frame = 0


Query: 79  WKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIELIRLCGELQNVPLAMRVFT 138
           + AL+  L      K A  ++   +EK    N      Y  LI +      + LA    T
Sbjct: 249 YNALINGLCKEHDYKGAFELMREMVEKGISPNVIS---YSTLINVLCNSGQIELAFSFLT 308

Query: 139 AMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSESFKPNADTFTSFILAFAIL 198
            M  +G  P +   +SL++ C        AL ++  M      +PN   + + +  F   
Sbjct: 309 QMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSH 368

Query: 199 HDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAVRCYEEMMSSGIVPNTIIL 258
            ++    + +S  +  G SP++RTY +LI+G  +    D AV  + +M++SG  PN ++ 
Sbjct: 369 GNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVY 428

Query: 259 ENMLEGLCKRKNLDEVKKFLNVV 282
            NM+E LC+     E +  + ++
Sbjct: 429 TNMVEALCRHSKFKEAESLIEIM 448

[Close]

BLAST of Lcy12g015940 vs. ExPASy Swiss-Prot
Match: Q9FNL2 (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.3e-13
Identity = 57/220 (25.91%), Postives = 100/220 (45.45%), Query Frame = 0


Query: 108 KENERDPD--FYIELIRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEA-CLSSHN 167
           K+ + DP    Y+ ++ +  E   + LA + +  M   G+ PTV + N LI+A C +   
Sbjct: 113 KDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGT 172

Query: 168 MITALSIFEVMKNSESFKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYE 227
           +   L IF  M       P++ T+ + I        +D  +  ++       +P + TY 
Sbjct: 173 VDAGLKIFLEMP-KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYT 232

Query: 228 ALIHGSIQSKCFDFAVRCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDK 287
           +LI+G   SK  D A+R  EEM S GI PN     ++++GLCK     +  +   +++ +
Sbjct: 233 SLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMAR 292

Query: 288 GWEINWNVAEKFIRICFGYEEVEGMEEFLSKLNKSNLGPD 325
           G   N       I      ++++   E L ++N   L PD
Sbjct: 293 GCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPD 331

[Close]

BLAST of Lcy12g015940 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 4.3e-13
Identity = 75/298 (25.17%), Postives = 124/298 (41.61%), Query Frame = 0


Query: 30  LGSRRFVSTDQSNSIS-NPLLLRLLQEPSSSVKSVLDSQENAFLCSSQL-SWKALVKSLI 89
           L  + FV   Q N+++ N L+  L     +S    L  +  A  C   L ++  +V  L 
Sbjct: 172 LVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLC 231

Query: 90  SSSSPKKALLVLEWRLEKMSK-ENERDPDFYIELIRLCGELQNVPLAMRVFTAMEFQGVT 149
                  AL +    L+KM K + E D   Y  +I      +NV  A+ +FT M+ +G+ 
Sbjct: 232 KRGDIDLALSL----LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 291

Query: 150 PTVTAFNSLIEACLSSHNMITALSIFEVMKNSESFKPNADTFTSFILAFAILHDVDSMQA 209
           P V  +NSLI  CL ++   +  S            PN  TF++ I AF     +   + 
Sbjct: 292 PNVVTYNSLIR-CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 351

Query: 210 WYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAVRCYEEMMSSGIVPNTIILENMLEGLC 269
            Y         PD+ TY +LI+G       D A   +E M+S    PN +    +++G C
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 411

Query: 270 KRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRICFGYEEVEGMEEFLSKLNKSNLGPD 325
           K K ++E  +    +  +G   N       I+  F   + +  ++   K+    + PD
Sbjct: 412 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

[Close]

BLAST of Lcy12g015940 vs. ExPASy Swiss-Prot
Match: Q9ZUU3 (Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana OX=3702 GN=At2g37230 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-12
Identity = 51/174 (29.31%), Postives = 75/174 (43.10%), Query Frame = 0


Query: 111 ERDPDFYIELIRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALS 170
           ER    Y  L ++        +A R F  M  +GV PT   +N ++     S  + TAL 
Sbjct: 217 ERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALR 276

Query: 171 IFEVMKNSESFKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGS 230
            FE MK +    P+  TF + I  F     +D  +  +   K     P + +Y  +I G 
Sbjct: 277 FFEDMK-TRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGY 336

Query: 231 IQSKCFDFAVRCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDK 285
           +     D  +R +EEM SSGI PN      +L GLC    + E K  L  ++ K
Sbjct: 337 LAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAK 389

[Close]

BLAST of Lcy12g015940 vs. ExPASy Swiss-Prot
Match: Q9CAN0 (Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g63130 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-12
Identity = 58/234 (24.79%), Postives = 97/234 (41.45%), Query Frame = 0


Query: 93  KKALLVLEWRLEKMSKENERDPD--FYIELIRLCGELQNVPLAMRVFTAMEFQGVTPTVT 152
           K+  + L   L K  ++ + +P    Y  +I      +NV  A+ +FT M+ +G+ P V 
Sbjct: 233 KRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 292

Query: 153 AFNSLIEACLSSHNMITALSIFEVMKNSESFKPNADTFTSFILAFAILHDVDSMQAWYSA 212
            +NSLI  CL ++   +  S            PN  TF++ I AF     +   +  Y  
Sbjct: 293 TYNSLIR-CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 352

Query: 213 KKAFGFSPDLRTYEALIHGSIQSKCFDFAVRCYEEMMSSGIVPNTIILENMLEGLCKRKN 272
                  PD+ TY +LI+G       D A   +E M+S    PN +    +++G CK K 
Sbjct: 353 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 412

Query: 273 LDEVKKFLNVVLDKGWEINWNVAEKFIRICFGYEEVEGMEEFLSKLNKSNLGPD 325
           +DE  +    +  +G   N       I   F   E +  +    ++    + PD
Sbjct: 413 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPD 465

[Close]

BLAST of Lcy12g015940 vs. ExPASy TrEMBL
Match: A0A6J1D545 (pentatricopeptide repeat-containing protein At3g48810-like OS=Momordica charantia OX=3673 GN=LOC111017344 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.9e-137
Identity = 256/328 (78.05%), Postives = 284/328 (86.59%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MAL W+RVL LAK GSSRI L L E RY+  SR F STD SN  SNPLLLRLLQEPSSSV
Sbjct: 15  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSN--SNPLLLRLLQEPSSSV 74

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDS E+AFLCSS++S K+LV+SL+SSSSPKKA LVLEWRLE+MSKENE DPD YI+L
Sbjct: 75  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 134

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           IRLCGELQN PLAMRVF AMEFQGV PT   FNSL+EACLSSHNMITA SIFEVMKNSES
Sbjct: 135 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 194

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
           +KPNADTFTSFI AFA L DVDSMQAWYSAK+AFGFSPDL+TYE+LI+GS++SKCFDFAV
Sbjct: 195 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 254

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           RC+EEMM SGIVPN IILENM+EGLCKRKN +EVKKFLN+V D GWEI+  VA+KFIR  
Sbjct: 255 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 314

Query: 301 FGYEEVEGMEEFLSKLNKSNLGPDGLSS 329
           F    V+GMEE L+KL+KSNL PDG+SS
Sbjct: 315 FDLGAVDGMEELLTKLSKSNLAPDGMSS 340

[Close]

BLAST of Lcy12g015940 vs. ExPASy TrEMBL
Match: A0A6J1II25 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476476 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 6.5e-137
Identity = 255/319 (79.94%), Postives = 277/319 (86.83%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MA+  NRVLALAK GSSRIPL L E  Y+   RRFVSTD SNSI NPL+LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRLQEAHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDS EN FL SS+LSWKALV SLISSSSPKKA L LEWRLEKM+KENERDPDFYI+L
Sbjct: 61  KSVLDSPENDFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMNKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV PTVTAFNSLIE C+SSHNMITA S+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
           FKPNADTF  FI AFA L DV+SM+AWYSAK+AF FS DLRTYEALIHGS+ SKCFDFAV
Sbjct: 181 FKPNADTFFYFISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAV 240

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           RC++EMM SGIVPN IIL+NMLEG CKRK+LDE+KKFL VVLDKGWEI WNV EKFI I 
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEKFIPIW 300

Query: 301 FGYEEVEGMEEFLSKLNKS 320
           F   E EGMEE L+KLN++
Sbjct: 301 FESGEAEGMEEILTKLNEA 319

[Close]

BLAST of Lcy12g015940 vs. ExPASy TrEMBL
Match: A0A6J1FC94 (pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442788 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 3.1e-131
Identity = 245/301 (81.40%), Postives = 264/301 (87.71%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MA+  NRVLALAK GSSR+PL L E  Y+   RRFVSTD SNSI NPL+LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDS ENAFL SS LSWKALV SLISSSSPKKA L LEWRLEKMSKENERDPDFYI+L
Sbjct: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV PTVTAFNSLIE C+SSHNMITA S+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
            KPNADTF  FI AFA  HDV+SM+AWYSA +AF FS DLRTYEALIHGS++SKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           RC++EMM SGIVPN IIL+NMLEG CKRK+LDE+KKFL VVLDKGWEINWNV EKFI I 
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 301 F 302
           F
Sbjct: 301 F 301

[Close]

BLAST of Lcy12g015940 vs. ExPASy TrEMBL
Match: A0A5D3E5Z9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006320 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.8e-126
Identity = 241/328 (73.48%), Postives = 267/328 (81.40%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MA T  RVL LA++ S  IPL   +  Y L  R F STD S SI+NPLLL+LLQEP+SSV
Sbjct: 1   MASTGKRVLTLARNVSFSIPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDSQEN FLCSS+LS   LV SLISSS PKKA LVLEW+LEKMSK NE DPD YI L
Sbjct: 61  KSVLDSQENGFLCSSRLSLNDLVTSLISSSKPKKAQLVLEWKLEKMSKRNESDPDLYINL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           IRLCG+L++  LAMRVFT MEFQGV PTVTAFNSLIEAC+SSHNMITA  IFEVMKNS++
Sbjct: 121 IRLCGKLRDSFLAMRVFTVMEFQGVKPTVTAFNSLIEACISSHNMITAFGIFEVMKNSKN 180

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
           FKPN DTF  FI  F+ L DV+SMQAWYSAKKAF FSPDLRTYEALIHGS++SKCFDFAV
Sbjct: 181 FKPNTDTFYYFISEFSKLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           +C+EEMM S IVPN IILENMLEGLCKRKN DEVKKFLNVVLD GWEINWNV EKFI + 
Sbjct: 241 KCFEEMMLSDIVPNAIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEINWNVVEKFIPVW 300

Query: 301 FGYEEVEGMEEFLSKLNKSNLGPDGLSS 329
           F   E+EGM+E L+K+NKSN   D + S
Sbjct: 301 FESGELEGMKEILTKINKSNSATDDIQS 328

[Close]

BLAST of Lcy12g015940 vs. ExPASy TrEMBL
Match: A0A1S3CS56 (pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=3656 GN=LOC103503719 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.8e-126
Identity = 241/328 (73.48%), Postives = 267/328 (81.40%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MA T  RVL LA++ S  IPL   +  Y L  R F STD S SI+NPLLL+LLQEP+SSV
Sbjct: 1   MASTGKRVLTLARNVSFSIPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDSQEN FLCSS+LS   LV SLISSS PKKA LVLEW+LEKMSK NE DPD YI L
Sbjct: 61  KSVLDSQENGFLCSSRLSLNDLVTSLISSSKPKKAQLVLEWKLEKMSKRNESDPDLYINL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           IRLCG+L++  LAMRVFT MEFQGV PTVTAFNSLIEAC+SSHNMITA  IFEVMKNS++
Sbjct: 121 IRLCGKLRDSFLAMRVFTVMEFQGVKPTVTAFNSLIEACISSHNMITAFGIFEVMKNSKN 180

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
           FKPN DTF  FI  F+ L DV+SMQAWYSAKKAF FSPDLRTYEALIHGS++SKCFDFAV
Sbjct: 181 FKPNTDTFYYFISEFSKLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           +C+EEMM S IVPN IILENMLEGLCKRKN DEVKKFLNVVLD GWEINWNV EKFI + 
Sbjct: 241 KCFEEMMLSDIVPNAIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEINWNVVEKFIPVW 300

Query: 301 FGYEEVEGMEEFLSKLNKSNLGPDGLSS 329
           F   E+EGM+E L+K+NKSN   D + S
Sbjct: 301 FESGELEGMKEILTKINKSNSATDDIQS 328

[Close]

BLAST of Lcy12g015940 vs. NCBI nr
Match: XP_038897030.1 (pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 516.2 bits (1328), Expect = 2.1e-142
Identity = 265/326 (81.29%), Postives = 286/326 (87.73%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MALT  RVLALA SGSSRIPL L +  + L  RRFVSTD SN ISNPLLLRLLQEP+SSV
Sbjct: 1   MALTGKRVLALAGSGSSRIPLQLQQAHFPLCFRRFVSTDPSNPISNPLLLRLLQEPTSSV 60

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDSQENAFLCSS+LS+  LV SLISSSSPKKA LVLEW+LEKMSKENERDPDFYI+L
Sbjct: 61  KSVLDSQENAFLCSSRLSFNTLVTSLISSSSPKKAQLVLEWKLEKMSKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           +RLCGELQN PLAM VFT MEFQGV PTVTAFNSLIEAC+SS NMITA SIFEVMKNSES
Sbjct: 121 MRLCGELQNSPLAMCVFTVMEFQGVKPTVTAFNSLIEACISSRNMITAFSIFEVMKNSES 180

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
           +KPN+DTF  FI  FA LHDV+SMQAWYSAKKAFGFSPDLRTYEALIHGS++SKCFDFAV
Sbjct: 181 YKPNSDTFYHFIFVFAKLHDVNSMQAWYSAKKAFGFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           +C+EEMM SGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNV  KF  I 
Sbjct: 241 KCFEEMMLSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVVAKFFPIW 300

Query: 301 FGYEEVEGMEEFLSKLNKSNLGPDGL 327
           F   E+EGMEE L+K+NKSN   +G+
Sbjct: 301 FESGELEGMEEILTKINKSNSAVNGI 326

[Close]

BLAST of Lcy12g015940 vs. NCBI nr
Match: KAG7024539.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 499.6 bits (1285), Expect = 2.1e-137
Identity = 256/319 (80.25%), Postives = 279/319 (87.46%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MA+  NRVLALAK GSSR+PL L E  Y+   RRFVSTD SNSI NPL+LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDS ENAFL SS+LSWKALV SLISSSSPKKA L LEWRLEKMSKENERDPDFYI+L
Sbjct: 61  KSVLDSPENAFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV PTVTAFNSLIE C+SSHNMITA S+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
            KPNADTF  FI AFA  HDV+SM+AWYSAK+AF FS DLRTYEALIHGS++SKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           RC++EMM SGIVPN IIL+NMLEG CKRK+LDE+KKFL VVLDKGWEINWNV EKFI I 
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 301 FGYEEVEGMEEFLSKLNKS 320
           F   E EGMEE L+KLN++
Sbjct: 301 FESGEAEGMEEILTKLNEA 319

[Close]

BLAST of Lcy12g015940 vs. NCBI nr
Match: XP_022148798.1 (pentatricopeptide repeat-containing protein At3g48810-like [Momordica charantia])

HSP 1 Score: 498.0 bits (1281), Expect = 6.0e-137
Identity = 256/328 (78.05%), Postives = 284/328 (86.59%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MAL W+RVL LAK GSSRI L L E RY+  SR F STD SN  SNPLLLRLLQEPSSSV
Sbjct: 15  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSN--SNPLLLRLLQEPSSSV 74

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDS E+AFLCSS++S K+LV+SL+SSSSPKKA LVLEWRLE+MSKENE DPD YI+L
Sbjct: 75  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 134

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           IRLCGELQN PLAMRVF AMEFQGV PT   FNSL+EACLSSHNMITA SIFEVMKNSES
Sbjct: 135 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 194

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
           +KPNADTFTSFI AFA L DVDSMQAWYSAK+AFGFSPDL+TYE+LI+GS++SKCFDFAV
Sbjct: 195 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 254

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           RC+EEMM SGIVPN IILENM+EGLCKRKN +EVKKFLN+V D GWEI+  VA+KFIR  
Sbjct: 255 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 314

Query: 301 FGYEEVEGMEEFLSKLNKSNLGPDGLSS 329
           F    V+GMEE L+KL+KSNL PDG+SS
Sbjct: 315 FDLGAVDGMEELLTKLSKSNLAPDGMSS 340

[Close]

BLAST of Lcy12g015940 vs. NCBI nr
Match: XP_022975914.1 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima] >XP_022975915.1 pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 496.9 bits (1278), Expect = 1.3e-136
Identity = 255/319 (79.94%), Postives = 277/319 (86.83%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MA+  NRVLALAK GSSRIPL L E  Y+   RRFVSTD SNSI NPL+LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRLQEAHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDS EN FL SS+LSWKALV SLISSSSPKKA L LEWRLEKM+KENERDPDFYI+L
Sbjct: 61  KSVLDSPENDFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMNKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV PTVTAFNSLIE C+SSHNMITA S+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
           FKPNADTF  FI AFA L DV+SM+AWYSAK+AF FS DLRTYEALIHGS+ SKCFDFAV
Sbjct: 181 FKPNADTFFYFISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAV 240

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           RC++EMM SGIVPN IIL+NMLEG CKRK+LDE+KKFL VVLDKGWEI WNV EKFI I 
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEKFIPIW 300

Query: 301 FGYEEVEGMEEFLSKLNKS 320
           F   E EGMEE L+KLN++
Sbjct: 301 FESGEAEGMEEILTKLNEA 319

[Close]

BLAST of Lcy12g015940 vs. NCBI nr
Match: XP_023534997.1 (pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.5 bits (1264), Expect = 5.6e-135
Identity = 253/319 (79.31%), Postives = 276/319 (86.52%), Query Frame = 0


Query: 1   MALTWNRVLALAKSGSSRIPLGLPEVRYQLGSRRFVSTDQSNSISNPLLLRLLQEPSSSV 60
           MA+  NRVLALAK GSSRIPL   E  Y+   RRFVSTD SNSI NP +LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRFQEAHYRCICRRFVSTDPSNSILNPQVLRLIQEPSSSV 60

Query: 61  KSVLDSQENAFLCSSQLSWKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIEL 120
           KSVLDS ENAFL +S+LSWKALV SLISSSSPKKA L LEWRLEKMSKENERDPDFYI+L
Sbjct: 61  KSVLDSPENAFLGNSRLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 IRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSES 180
           IRLCGELQNVPLAMRVFTAMEFQGV PTVTAFNSLIE C+SSHNMITA S+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 FKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAV 240
            KPNADTF  FI AFA   DV+SM+AWYSAK+AF FS DLRTYEALIHGS++SKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRLDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 241 RCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRIC 300
           RC++EMM SGIVPN IIL+NMLEG CKRK+LDE+KKFL VVLDKGWEINWNV EKFI I 
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 301 FGYEEVEGMEEFLSKLNKS 320
           F   E EGMEE L+KLN++
Sbjct: 301 FESGEAEGMEEILTKLNEA 319

[Close]

BLAST of Lcy12g015940 vs. TAIR 10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-15
Identity = 50/203 (24.63%), Postives = 90/203 (44.33%), Query Frame = 0


Query: 79  WKALVKSLISSSSPKKALLVLEWRLEKMSKENERDPDFYIELIRLCGELQNVPLAMRVFT 138
           + AL+  L      K A  ++   +EK    N      Y  LI +      + LA    T
Sbjct: 249 YNALINGLCKEHDYKGAFELMREMVEKGISPNVIS---YSTLINVLCNSGQIELAFSFLT 308

Query: 139 AMEFQGVTPTVTAFNSLIEACLSSHNMITALSIFEVMKNSESFKPNADTFTSFILAFAIL 198
            M  +G  P +   +SL++ C        AL ++  M      +PN   + + +  F   
Sbjct: 309 QMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSH 368

Query: 199 HDVDSMQAWYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAVRCYEEMMSSGIVPNTIIL 258
            ++    + +S  +  G SP++RTY +LI+G  +    D AV  + +M++SG  PN ++ 
Sbjct: 369 GNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVY 428

Query: 259 ENMLEGLCKRKNLDEVKKFLNVV 282
            NM+E LC+     E +  + ++
Sbjct: 429 TNMVEALCRHSKFKEAESLIEIM 448

[Close]

BLAST of Lcy12g015940 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 3.1e-14
Identity = 75/298 (25.17%), Postives = 124/298 (41.61%), Query Frame = 0


Query: 30  LGSRRFVSTDQSNSIS-NPLLLRLLQEPSSSVKSVLDSQENAFLCSSQL-SWKALVKSLI 89
           L  + FV   Q N+++ N L+  L     +S    L  +  A  C   L ++  +V  L 
Sbjct: 172 LVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLC 231

Query: 90  SSSSPKKALLVLEWRLEKMSK-ENERDPDFYIELIRLCGELQNVPLAMRVFTAMEFQGVT 149
                  AL +    L+KM K + E D   Y  +I      +NV  A+ +FT M+ +G+ 
Sbjct: 232 KRGDIDLALSL----LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 291

Query: 150 PTVTAFNSLIEACLSSHNMITALSIFEVMKNSESFKPNADTFTSFILAFAILHDVDSMQA 209
           P V  +NSLI  CL ++   +  S            PN  TF++ I AF     +   + 
Sbjct: 292 PNVVTYNSLIR-CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 351

Query: 210 WYSAKKAFGFSPDLRTYEALIHGSIQSKCFDFAVRCYEEMMSSGIVPNTIILENMLEGLC 269
            Y         PD+ TY +LI+G       D A   +E M+S    PN +    +++G C
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 411

Query: 270 KRKNLDEVKKFLNVVLDKGWEINWNVAEKFIRICFGYEEVEGMEEFLSKLNKSNLGPD 325
           K K ++E  +    +  +G   N       I+  F   + +  ++   K+    + PD
Sbjct: 412 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

[Close]

BLAST of Lcy12g015940 vs. TAIR 10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 3.1e-14
Identity = 57/220 (25.91%), Postives = 100/220 (45.45%), Query Frame = 0


Query: 108 KENERDPD--FYIELIRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEA-CLSSHN 167
           K+ + DP    Y+ ++ +  E   + LA + +  M   G+ PTV + N LI+A C +   
Sbjct: 113 KDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGT 172

Query: 168 MITALSIFEVMKNSESFKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYE 227
           +   L IF  M       P++ T+ + I        +D  +  ++       +P + TY 
Sbjct: 173 VDAGLKIFLEMP-KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYT 232

Query: 228 ALIHGSIQSKCFDFAVRCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDK 287
           +LI+G   SK  D A+R  EEM S GI PN     ++++GLCK     +  +   +++ +
Sbjct: 233 SLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMAR 292

Query: 288 GWEINWNVAEKFIRICFGYEEVEGMEEFLSKLNKSNLGPD 325
           G   N       I      ++++   E L ++N   L PD
Sbjct: 293 GCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPD 331

[Close]

BLAST of Lcy12g015940 vs. TAIR 10
Match: AT2G37230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-13
Identity = 51/174 (29.31%), Postives = 75/174 (43.10%), Query Frame = 0


Query: 111 ERDPDFYIELIRLCGELQNVPLAMRVFTAMEFQGVTPTVTAFNSLIEACLSSHNMITALS 170
           ER    Y  L ++        +A R F  M  +GV PT   +N ++     S  + TAL 
Sbjct: 217 ERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALR 276

Query: 171 IFEVMKNSESFKPNADTFTSFILAFAILHDVDSMQAWYSAKKAFGFSPDLRTYEALIHGS 230
            FE MK +    P+  TF + I  F     +D  +  +   K     P + +Y  +I G 
Sbjct: 277 FFEDMK-TRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGY 336

Query: 231 IQSKCFDFAVRCYEEMMSSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDK 285
           +     D  +R +EEM SSGI PN      +L GLC    + E K  L  ++ K
Sbjct: 337 LAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAK 389

[Close]

BLAST of Lcy12g015940 vs. TAIR 10
Match: AT1G63130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-13
Identity = 58/234 (24.79%), Postives = 97/234 (41.45%), Query Frame = 0


Query: 93  KKALLVLEWRLEKMSKENERDPD--FYIELIRLCGELQNVPLAMRVFTAMEFQGVTPTVT 152
           K+  + L   L K  ++ + +P    Y  +I      +NV  A+ +FT M+ +G+ P V 
Sbjct: 233 KRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 292

Query: 153 AFNSLIEACLSSHNMITALSIFEVMKNSESFKPNADTFTSFILAFAILHDVDSMQAWYSA 212
            +NSLI  CL ++   +  S            PN  TF++ I AF     +   +  Y  
Sbjct: 293 TYNSLIR-CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 352

Query: 213 KKAFGFSPDLRTYEALIHGSIQSKCFDFAVRCYEEMMSSGIVPNTIILENMLEGLCKRKN 272
                  PD+ TY +LI+G       D A   +E M+S    PN +    +++G CK K 
Sbjct: 353 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 412

Query: 273 LDEVKKFLNVVLDKGWEINWNVAEKFIRICFGYEEVEGMEEFLSKLNKSNLGPD 325
           +DE  +    +  +G   N       I   F   E +  +    ++    + PD
Sbjct: 413 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPD 465

The following BLAST results are available for this feature:

BLAST of Lcy12g015940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M302	3.9e-14	24.63	Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX...	[more]
Q9FNL2	4.3e-13	25.91	Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX...	[more]
Q9LQ14	4.3e-13	25.17	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop...	[more]
Q9ZUU3	2.2e-12	29.31	Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana OX...	[more]
Q9CAN0	2.8e-12	24.79	Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidop...	[more]

BLAST of Lcy12g015940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D545	2.9e-137	78.05	pentatricopeptide repeat-containing protein At3g48810-like OS=Momordica charanti...	[more]
A0A6J1II25	6.5e-137	79.94	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbi...	[more]
A0A6J1FC94	3.1e-131	81.40	pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isofor...	[more]
A0A5D3E5Z9	1.8e-126	73.48	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CS56	1.8e-126	73.48	pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=36...	[more]

BLAST of Lcy12g015940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897030.1	2.1e-142	81.29	pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Benin...	[more]
KAG7024539.1	2.1e-137	80.25	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022148798.1	6.0e-137	78.05	pentatricopeptide repeat-containing protein At3g48810-like [Momordica charantia]	[more]
XP_022975914.1	1.3e-136	79.94	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita...	[more]
XP_023534997.1	5.6e-135	79.31	pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucur...	[more]

BLAST of Lcy12g015940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48810.1	2.8e-15	24.63	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62930.1	3.1e-14	25.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G46100.1	3.1e-14	25.91	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G37230.1	1.5e-13	29.31	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G63130.1	2.0e-13	24.79	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 120..283 e-value: 1.4E-9 score: 37.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 116..324 e-value: 9.6E-37 score: 129.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 222..255 e-value: 4.8E-7 score: 27.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 219..253 score: 10.632519
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 35..320
None	No IPR available	PANTHER	PTHR45613:SF360	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 35..320

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g015940.1	Lcy12g015940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0005515	protein binding