Lcy12g014710 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g014710
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	dehydration-responsive element-binding protein 3-like
Location	Chr12: 42625909 .. 42626783 (+)
RNA-Seq Expression	Lcy12g014710
Synteny	Lcy12g014710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTATCCCCCTCCTCCGCCGCCGACGACTCCGACGAGCTCACCGAGATCGTCAAGCTGCCCACCCTCGGCACCAACTACGATGATCACTTCATCGCCAATAACGAGTTCGTGCTGATGGATTCGACCGAGGGCTGGGTTTATCCGCCGCCCTGGCTACGAACCATGGAGGATTGCGGCTACAACAGCAACGACATTATTGACGACTTGGGAATTGGGGATAGTAATTTCTTGTGGTAATTTTTATTTTTTCAACTTCAAGACACTGTAAATCTTCTCATTTGGTTTTGTGCTCTGTAATTAGATCCGTGAGGTGTTACGTGTTTTTTTTTTTTTTGGCTTAATTAAGAAGCCTTTTTATTTTCTCTCTCTAGCTCTCTCTTTCTCTATTGACCACTTTGTTTGTTTGGTTTCTTTGGGTTTGGTTGGAGTGTTGTTGAAATATCTCGTGTAAATCTCTTTTAATTAATGCACTTAACTGCTTGTGGTCCTCCTTTTAATGGTGCAAACAGTTAAAGCAATGATGCAACCAATGGAATAGAGTTGAGTTGAGTGCCTTCTTCTTCTAAGATACATTTTCATTTAATCCCATCCCATTTAATTTAAATTAAATTATATTTCAACCCAAATATATGCAAATATAATAAAATTACCACAAACGGCTCTGCTCTGCATCTGCATGGGAATATATCTCAGTCTCACTGACTCATAACTCAGAAGATATGACGGTGACCGTGACGGTAACGGTAACGGCGACAGTGAATTTTCAGAGCATTTTTGGTGGATTGAAATTTGCCATAAACGAGGAGTTCAAAACTGACTTATTTTGCGTAGCAGCTCAGATGTCTTTTTATGTATACACTGTCAGTTAG

mRNA sequence

ATGGATTTATCCCCCTCCTCCGCCGCCGACGACTCCGACGAGCTCACCGAGATCGTCAAGCTGCCCACCCTCGGCACCAACTACGATGATCACTTCATCGCCAATAACGAGTTCGTGCTGATGGATTCGACCGAGGGCTGGGTTTATCCGCCGCCCTGGCTACGAACCATGGAGGATTGCGGCTACAACAGCAACGACATTATTGACGACTTGGGAATTGGGGATATCTCACTGACTCATAACTCAGAAGATATGACGGTGACCGTGACGGTAACGGTAACGGCGACAGTGAATTTTCAGAGCATTTTTGGTGGATTGAAATTTGCCATAAACGAGGAGTTCAAAACTGACTTATTTTGCGTAGCAGCTCAGATGTCTTTTTATGTATACACTGTCAGTTAG

Coding sequence (CDS)

ATGGATTTATCCCCCTCCTCCGCCGCCGACGACTCCGACGAGCTCACCGAGATCGTCAAGCTGCCCACCCTCGGCACCAACTACGATGATCACTTCATCGCCAATAACGAGTTCGTGCTGATGGATTCGACCGAGGGCTGGGTTTATCCGCCGCCCTGGCTACGAACCATGGAGGATTGCGGCTACAACAGCAACGACATTATTGACGACTTGGGAATTGGGGATATCTCACTGACTCATAACTCAGAAGATATGACGGTGACCGTGACGGTAACGGTAACGGCGACAGTGAATTTTCAGAGCATTTTTGGTGGATTGAAATTTGCCATAAACGAGGAGTTCAAAACTGACTTATTTTGCGTAGCAGCTCAGATGTCTTTTTATGTATACACTGTCAGTTAG

Protein sequence

MDLSPSSAADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCGYNSNDIIDDLGIGDISLTHNSEDMTVTVTVTVTATVNFQSIFGGLKFAINEEFKTDLFCVAAQMSFYVYTVS

Homology

[Close]

BLAST of Lcy12g014710 vs. ExPASy Swiss-Prot
Match: Q9LYD3 (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.5e-07
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1   MDLSPSSAADDSDELTEIVKLPTLGTNYD-DHFIANNEFVLMDSTEGWVYPPPWLRTMED 60
           MDLS +    +S+EL EIV+LP+LG +YD D     NEFV  DS +  +YPPPW ++ ED
Sbjct: 163 MDLSRT----ESEELGEIVELPSLGASYDVDSANLGNEFVFYDSVDYCLYPPPWGQSSED 218

[Close]

BLAST of Lcy12g014710 vs. ExPASy Swiss-Prot
Match: Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.5e-07
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 6   SSAADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPW 54
           SS+A  S+EL EIV+LP+LG++YD      NEF+  DS + W YPP W
Sbjct: 147 SSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSDSADLWPYPPQW 194

[Close]

BLAST of Lcy12g014710 vs. ExPASy Swiss-Prot
Match: Q9M080 (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 GN=ERF043 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.1e-06
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 12  SDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMED--CGYNSND 67
           SD+L EIVKLP+LGT+ ++    +NEFV+ DS E  VY P WL   E+    YN+ND
Sbjct: 153 SDDLDEIVKLPSLGTSLNE----SNEFVIFDSLEDLVYMPRWLSGTEEEVFTYNNND 205

[Close]

BLAST of Lcy12g014710 vs. ExPASy TrEMBL
Match: A0A6J1ILS4 (dehydration-responsive element-binding protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111476756 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.9e-20
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 8   AADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCGY----N 67
           + DDSDEL+EIVKLP+L TNY      NNEFVLMDST+GWVYPPPWLRTM+DC Y    N
Sbjct: 132 STDDSDELSEIVKLPSLSTNY-----LNNEFVLMDSTDGWVYPPPWLRTMDDCSYYNNNN 191

Query: 68  SNDIIDDLGIGD 76
           +N+IID++GIGD
Sbjct: 192 NNNIIDEMGIGD 198

[Close]

BLAST of Lcy12g014710 vs. ExPASy TrEMBL
Match: A0A6J1F7M6 (dehydration-responsive element-binding protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111442837 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 8   AADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCGY---NS 67
           + DDSDEL+EIVKLP+L TNY      NNEFVLMDST+GWVYPPPWLRTM+D  Y   N+
Sbjct: 126 STDDSDELSEIVKLPSLTTNY-----LNNEFVLMDSTDGWVYPPPWLRTMDDSSYNNNNN 185

Query: 68  NDIIDDLGIGD 76
           N+IID++GIGD
Sbjct: 186 NNIIDEMGIGD 191

[Close]

BLAST of Lcy12g014710 vs. ExPASy TrEMBL
Match: A0A1S3CQC6 (dehydration-responsive element-binding protein 3-like OS=Cucumis melo OX=3656 GN=LOC103503601 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.2e-18
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 4   SPSSAA---DDSDELTEIVKLPTL-GTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMED 63
           SPSS+    DD  ELTEIVKLPTL  +NYDDH     EFVLMDSTEGWVYPPPWLRT+ED
Sbjct: 150 SPSSSTQPDDDDHELTEIVKLPTLASSNYDDH-----EFVLMDSTEGWVYPPPWLRTIED 209

Query: 64  --CGYNSNDIIDDLGIGDISLTHNSEDMT 87
              GY++N+I D+LGIGD    HN  +++
Sbjct: 210 YYYGYHTNNINDELGIGD----HNHSNLS 229

[Close]

BLAST of Lcy12g014710 vs. ExPASy TrEMBL
Match: A0A0A0LHV3 (AP2 domain class transcription factor OS=Cucumis sativus OX=3659 GN=Csa_3G895680 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 3   LSPSSAADDSD--ELTEIVKLPTL-GTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMED 62
           LSPSS  DD D  EL+EIVKLPTL  +NYDDH     EFVLMDSTEGWVYPPPWLRTMED
Sbjct: 143 LSPSSPEDDEDGHELSEIVKLPTLASSNYDDH-----EFVLMDSTEGWVYPPPWLRTMED 202

Query: 63  --CGYNSNDIIDDLGI 74
              GY++N+I D+LGI
Sbjct: 203 YYYGYHTNNINDELGI 213

[Close]

BLAST of Lcy12g014710 vs. ExPASy TrEMBL
Match: A0A6J1J127 (dehydration-responsive element-binding protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111480318 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.7e-15
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4   SPSSAADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEG-WVYPPPWLRTMEDCGY 63
           S S+A DDSD+L EI+KLP LGTNY DH I NNEFVLMDS+E  W YPPPW+RTMED   
Sbjct: 119 SASAADDDSDDLAEIIKLPNLGTNY-DHSIGNNEFVLMDSSESCWAYPPPWVRTMEDTAE 178

Query: 64  NSNDIID 70
           + N + D
Sbjct: 179 DGNFLRD 184

[Close]

BLAST of Lcy12g014710 vs. NCBI nr
Match: XP_038899086.1 (ethylene-responsive transcription factor TINY-like [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 4   SPSSAA--DDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCG 63
           SPSSAA  DDSDELTEIVKLPTL +NYD      +EFVLMDS EGWVYPPPWLRTMEDCG
Sbjct: 155 SPSSAADDDDSDELTEIVKLPTLASNYD------HEFVLMDSMEGWVYPPPWLRTMEDCG 214

Query: 64  Y-NSNDIIDDLGIGD 76
           Y NSN+I+D+ GIGD
Sbjct: 215 YTNSNNIVDNFGIGD 223

[Close]

BLAST of Lcy12g014710 vs. NCBI nr
Match: XP_022976323.1 (dehydration-responsive element-binding protein 3-like [Cucurbita maxima])

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-19
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 8   AADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCGY----N 67
           + DDSDEL+EIVKLP+L TNY      NNEFVLMDST+GWVYPPPWLRTM+DC Y    N
Sbjct: 132 STDDSDELSEIVKLPSLSTNY-----LNNEFVLMDSTDGWVYPPPWLRTMDDCSYYNNNN 191

Query: 68  SNDIIDDLGIGD 76
           +N+IID++GIGD
Sbjct: 192 NNNIIDEMGIGD 198

[Close]

BLAST of Lcy12g014710 vs. NCBI nr
Match: XP_023535238.1 (dehydration-responsive element-binding protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-19
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 8   AADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCGYNSNDI 67
           + DDSDEL+EIVKLP+L TNY      NNEFVLMDST+GWVYPPPWLRTM+DC YN ND 
Sbjct: 126 STDDSDELSEIVKLPSLTTNY-----LNNEFVLMDSTDGWVYPPPWLRTMDDCSYNHND- 185

Query: 68  IDDLGIGD 76
            D++GIGD
Sbjct: 186 -DEMGIGD 186

[Close]

BLAST of Lcy12g014710 vs. NCBI nr
Match: XP_022936152.1 (dehydration-responsive element-binding protein 3-like [Cucurbita moschata])

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-18
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 8   AADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCGY---NS 67
           + DDSDEL+EIVKLP+L TNY      NNEFVLMDST+GWVYPPPWLRTM+D  Y   N+
Sbjct: 126 STDDSDELSEIVKLPSLTTNY-----LNNEFVLMDSTDGWVYPPPWLRTMDDSSYNNNNN 185

Query: 68  NDIIDDLGIGD 76
           N+IID++GIGD
Sbjct: 186 NNIIDEMGIGD 191

[Close]

BLAST of Lcy12g014710 vs. NCBI nr
Match: KAG7024616.1 (Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-18
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 8   AADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCGY----N 67
           + DDSDEL+EIVKLP+L TNY      NNEFVLMDST+GWVYPPPWLRTM+D  Y    N
Sbjct: 126 STDDSDELSEIVKLPSLTTNY-----LNNEFVLMDSTDGWVYPPPWLRTMDDSSYNNNNN 185

Query: 68  SNDIIDDLGIGD 76
           +N+IID++GIGD
Sbjct: 186 NNNIIDEMGIGD 192

[Close]

BLAST of Lcy12g014710 vs. TAIR 10
Match: AT5G11590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-08
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1   MDLSPSSAADDSDELTEIVKLPTLGTNYD-DHFIANNEFVLMDSTEGWVYPPPWLRTMED 60
           MDLS +    +S+EL EIV+LP+LG +YD D     NEFV  DS +  +YPPPW ++ ED
Sbjct: 163 MDLSRT----ESEELGEIVELPSLGASYDVDSANLGNEFVFYDSVDYCLYPPPWGQSSED 218

[Close]

BLAST of Lcy12g014710 vs. TAIR 10
Match: AT5G25810.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-08
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 6   SSAADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPW 54
           SS+A  S+EL EIV+LP+LG++YD      NEF+  DS + W YPP W
Sbjct: 147 SSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSDSADLWPYPPQW 194

[Close]

BLAST of Lcy12g014710 vs. TAIR 10
Match: AT4G32800.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-07
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 12  SDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMED--CGYNSND 67
           SD+L EIVKLP+LGT+ ++    +NEFV+ DS E  VY P WL   E+    YN+ND
Sbjct: 153 SDDLDEIVKLPSLGTSLNE----SNEFVIFDSLEDLVYMPRWLSGTEEEVFTYNNND 205

[Close]

BLAST of Lcy12g014710 vs. TAIR 10
Match: AT1G77200.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   LSPSS--AADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPP--PW 54
           LSPSS  AA  ++EL+EIV+LP+L T+YD+     +EFV +DS     YPP  PW
Sbjct: 164 LSPSSEEAASTAEELSEIVELPSLETSYDESL---SEFVYVDS----AYPPSSPW 211

The following BLAST results are available for this feature:

BLAST of Lcy12g014710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYD3	5.5e-07	50.00	Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q39127	5.5e-07	52.08	Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M080	2.1e-06	50.88	Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lcy12g014710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILS4	5.9e-20	69.44	dehydration-responsive element-binding protein 3-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1F7M6	1.1e-18	69.01	dehydration-responsive element-binding protein 3-like OS=Cucurbita moschata OX=3...	[more]
A0A1S3CQC6	7.2e-18	62.92	dehydration-responsive element-binding protein 3-like OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0LHV3	2.1e-17	71.05	AP2 domain class transcription factor OS=Cucumis sativus OX=3659 GN=Csa_3G895680...	[more]
A0A6J1J127	5.7e-15	65.67	dehydration-responsive element-binding protein 3-like OS=Cucurbita maxima OX=366...	[more]

BLAST of Lcy12g014710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899086.1	1.3e-21	77.33	ethylene-responsive transcription factor TINY-like [Benincasa hispida]	[more]
XP_022976323.1	1.2e-19	69.44	dehydration-responsive element-binding protein 3-like [Cucurbita maxima]	[more]
XP_023535238.1	6.0e-19	72.06	dehydration-responsive element-binding protein 3-like [Cucurbita pepo subsp. pep...	[more]
XP_022936152.1	2.3e-18	69.01	dehydration-responsive element-binding protein 3-like [Cucurbita moschata]	[more]
KAG7024616.1	3.0e-18	68.06	Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperm...	[more]

BLAST of Lcy12g014710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11590.1	3.9e-08	50.00	Integrase-type DNA-binding superfamily protein	[more]
AT5G25810.1	3.9e-08	52.08	Integrase-type DNA-binding superfamily protein	[more]
AT4G32800.1	1.5e-07	50.88	Integrase-type DNA-binding superfamily protein	[more]
AT1G77200.1	2.0e-04	50.91	Integrase-type DNA-binding superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g014710.1	Lcy12g014710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity