Lcy12g014400 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g014400
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transcription initiation factor IIE subunit alpha-like
Location	Chr12: 42384701 .. 42386368 (-)
RNA-Seq Expression	Lcy12g014400
Synteny	Lcy12g014400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATAAATGCATCCAATTTCTCTCAAGAACAAGGCCAAGGCGTGACCGTGAGAGGCCGTTTTTCTGGCGTGGGCTCGCCAACTTGGAACCATCATTACACAATGAAACAAAGCTCGTGGCCCTTCCACACCTTTTACCATAAAATTTTATTTCCAAAGTCCTTTCTTTTTAGTATGCATTTGGACGAAAAGTAAAGGCCAAGAAACTCAGCCCCGCCCTGTTCTTCAATCTCCACCCTTATAATTTATTCCATTTCTAACCCAGGCAAAAAGGAGTGTTTCTGTTTTTTCAAAATTTCACAGATGATAAAGTAACACCCAACAAAAAGCAGTAGGGGGCCGGATCCTGACTCACTCATCAGTTCTTCTTTTTTCTTCTTCGATTCTCTGTAAGGATTTGTCTTTTAAAAACCCCACATCCCGAAACCCAGATGCCAGAAAACCACTTTTTTTCCACGCCGCTATGAAATTCGGTAGAGAGACTAAAGGGATCCCTTCCACGGATTTGTTGGTTTGTTTTCCTTCTCGCTCGCATTTGGCTTTGATGCCCAACCCGCTTTGCAGTCCTGCGAGAGGATCTGATTCGAATAAGCTCCGCCGTAGCCGCCTCCACCACCGGCGGAGGAAATCGGCGGAGAGTCCGGTGGTATGGGCGAAGGCGAAGACGATGGGGTCCGAGATGTCGGAACCGTCGTCGCCGAAAGTGACTTGTGCAGGGCAGATTAAGATCAGGCCGAAGAGCAGCAAGAGCTGGCAATCGGTGATGGAGGAGATAGAGAGAATTCACAATCGGAGGAAATTACGGAGGAGGCGGTTCAATTGGGTCGAGTCGTTAGGGTTCAAGAAGGATCTAATGCAATTCTTGACTTGTTTGAGAAGCATACGGTTTGATTTTAGGTGTTTCAGAGCATTCCCAGAAGCGGATTTCACTACTGAAGAAGATGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAAAATCTCCGGGAAATCAAGTGGGGGTTGAGGGAAGTGAAAGCTCCAGCACTGCATTTTCCAAATGGTTTATGGTTTTACAGGAAAGTGGAAGAGAAAGAAGAAGTTTCTGTAGCGTTGAGGATGGTTCGATCGAGCCACCAATGGCGCCGCCGAAAAACGCCCTTTTGCTAATGCGTTGCAGGTCGGCTCCGGCAAAGAGTTGGCTGGAACTGGAGGAAGAAGAAGAAGAAACTGAAGAGGAAGAAGAAGAAGCGGAAAAGGAAGAAGTGAAGGTGAAGAAGAGCTTGAAATGGCTAATGGAGGAAGAGAACAGAGAGAGATTGTCATCGGACATTGTAAGTGAAAAGAGCAGGGATTTGTTTTCAAGGAGTCGAAGTTGGAAAGTTTGATCCATCTCTGAATTCTCATCTTCTTCTAGACTTTTTTTTTTAAAAAAAAAAAAAAAACATGCTTGGAATATTTTTAAAATTCTGGAGTCTGAATCTCTGAGTATTATTGGGTTTGGTTGTATGTTGTACAGTTACTTTATAATTTCGTTGGGGGAGGATTTTAATGTCATGTATGAGACAGGCTTATAGTCAAGTTAAATATAATATTGGTTTGTTAATTATGAAATGTAATTATGTGAGGGGTTTCTTTTTTGTTAGTCCTTTATTTGTATTTTTCTGTTTCTCTTACAATAATT

mRNA sequence

AGAATAAATGCATCCAATTTCTCTCAAGAACAAGGCCAAGGCGTGACCGTGAGAGGCCGTTTTTCTGGCGTGGGCTCGCCAACTTGGAACCATCATTACACAATGAAACAAAGCTCGTGGCCCTTCCACACCTTTTACCATAAAATTTTATTTCCAAAGTCCTTTCTTTTTAGTATGCATTTGGACGAAAAGTAAAGGCCAAGAAACTCAGCCCCGCCCTGTTCTTCAATCTCCACCCTTATAATTTATTCCATTTCTAACCCAGGCAAAAAGGAGTGTTTCTGTTTTTTCAAAATTTCACAGATGATAAAGTAACACCCAACAAAAAGCAGTAGGGGGCCGGATCCTGACTCACTCATCAGTTCTTCTTTTTTCTTCTTCGATTCTCTGTAAGGATTTGTCTTTTAAAAACCCCACATCCCGAAACCCAGATGCCAGAAAACCACTTTTTTTCCACGCCGCTATGAAATTCGGTAGAGAGACTAAAGGGATCCCTTCCACGGATTTGTTGGTTTGTTTTCCTTCTCGCTCGCATTTGGCTTTGATGCCCAACCCGCTTTGCAGTCCTGCGAGAGGATCTGATTCGAATAAGCTCCGCCGTAGCCGCCTCCACCACCGGCGGAGGAAATCGGCGGAGAGTCCGGTGGTATGGGCGAAGGCGAAGACGATGGGGTCCGAGATGTCGGAACCGTCGTCGCCGAAAGTGACTTGTGCAGGGCAGATTAAGATCAGGCCGAAGAGCAGCAAGAGCTGGCAATCGGTGATGGAGGAGATAGAGAGAATTCACAATCGGAGGAAATTACGGAGGAGGCGGTTCAATTGGGTCGAGTCGTTAGGGTTCAAGAAGGATCTAATGCAATTCTTGACTTGTTTGAGAAGCATACGGTTTGATTTTAGGTGTTTCAGAGCATTCCCAGAAGCGGATTTCACTACTGAAGAAGATGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAAAATCTCCGGGAAATCAAGTGGGGGTTGAGGGAAGTGAAAGCTCCAGCACTGCATTTTCCAAATGGTTTATGGTTTTACAGGAAAGTGGAAGAGAAAGAAGAAGTTTCTGTAGCGTTGAGGATGGTTCGATCGAGCCACCAATGGCGCCGCCGAAAAACGCCCTTTTGCTAATGCGTTGCAGGTCGGCTCCGGCAAAGAGTTGGCTGGAACTGGAGGAAGAAGAAGAAGAAACTGAAGAGGAAGAAGAAGAAGCGGAAAAGGAAGAAGTGAAGGTGAAGAAGAGCTTGAAATGGCTAATGGAGGAAGAGAACAGAGAGAGATTGTCATCGGACATTGTAAGTGAAAAGAGCAGGGATTTGTTTTCAAGGAGTCGAAGTTGGAAAGTTTGATCCATCTCTGAATTCTCATCTTCTTCTAGACTTTTTTTTTTAAAAAAAAAAAAAAAACATGCTTGGAATATTTTTAAAATTCTGGAGTCTGAATCTCTGAGTATTATTGGGTTTGGTTGTATGTTGTACAGTTACTTTATAATTTCGTTGGGGGAGGATTTTAATGTCATGTATGAGACAGGCTTATAGTCAAGTTAAATATAATATTGGTTTGTTAATTATGAAATGTAATTATGTGAGGGGTTTCTTTTTTGTTAGTCCTTTATTTGTATTTTTCTGTTTCTCTTACAATAATT

Coding sequence (CDS)

ATGAAATTCGGTAGAGAGACTAAAGGGATCCCTTCCACGGATTTGTTGGTTTGTTTTCCTTCTCGCTCGCATTTGGCTTTGATGCCCAACCCGCTTTGCAGTCCTGCGAGAGGATCTGATTCGAATAAGCTCCGCCGTAGCCGCCTCCACCACCGGCGGAGGAAATCGGCGGAGAGTCCGGTGGTATGGGCGAAGGCGAAGACGATGGGGTCCGAGATGTCGGAACCGTCGTCGCCGAAAGTGACTTGTGCAGGGCAGATTAAGATCAGGCCGAAGAGCAGCAAGAGCTGGCAATCGGTGATGGAGGAGATAGAGAGAATTCACAATCGGAGGAAATTACGGAGGAGGCGGTTCAATTGGGTCGAGTCGTTAGGGTTCAAGAAGGATCTAATGCAATTCTTGACTTGTTTGAGAAGCATACGGTTTGATTTTAGGTGTTTCAGAGCATTCCCAGAAGCGGATTTCACTACTGAAGAAGATGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAAAATCTCCGGGAAATCAAGTGGGGGTTGAGGGAAGTGAAAGCTCCAGCACTGCATTTTCCAAATGGTTTATGGTTTTACAGGAAAGTGGAAGAGAAAGAAGAAGTTTCTGTAGCGTTGAGGATGGTTCGATCGAGCCACCAATGGCGCCGCCGAAAAACGCCCTTTTGCTAATGCGTTGCAGGTCGGCTCCGGCAAAGAGTTGGCTGGAACTGGAGGAAGAAGAAGAAGAAACTGAAGAGGAAGAAGAAGAAGCGGAAAAGGAAGAAGTGAAGGTGAAGAAGAGCTTGAAATGGCTAATGGAGGAAGAGAACAGAGAGAGATTGTCATCGGACATTGTAAGTGAAAAGAGCAGGGATTTGTTTTCAAGGAGTCGAAGTTGGAAAGTTTGA

Protein sequence

MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNRRKLRRRRFNWVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGNQVGVEGSESSSTAFSKWFMVLQESGRERRSFCSVEDGSIEPPMAPPKNALLLMRCRSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERLSSDIVSEKSRDLFSRSRSWKV

Homology

[Close]

BLAST of Lcy12g014400 vs. ExPASy TrEMBL
Match: A0A0A0L1Z4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377750 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 7.1e-114
Identity = 235/316 (74.37%), Postives = 271/316 (85.76%), Query Frame = 0


Query: 1   MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAE 60
           MK  RE +KGIPS+DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R +HRRRKSAE
Sbjct: 1   MKLNREKSKGIPSSDLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLDYRRYHRRRKSAE 60

Query: 61  SPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNRRKLRRRRF 120
           SPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQSVMEEIERIHNRRKLRRRRF
Sbjct: 61  SPVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRF 120

Query: 121 NWVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGN 180
           NW+ES GFKKD+MQFLTCLR++RFDFRCFRAFPE DFTTEE+EE+EEEEEEEEE+    N
Sbjct: 121 NWIESFGFKKDIMQFLTCLRTMRFDFRCFRAFPETDFTTEEEEEEEEEEEEEEEK----N 180

Query: 181 QVGVEGSESSSTAFSKWFMVLQESG-----RERRSFCSVEDGSIEPPMAPPKNALLLMRC 240
           QVG+E +ESS TAFSKWFMVLQE+G     R+  S C  +D SIE  MAPP+NALLLMRC
Sbjct: 181 QVGIEENESSRTAFSKWFMVLQENGSNELKRDSNSRCYEDDESIEATMAPPRNALLLMRC 240

Query: 241 RSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERLSSD-------IV 300
           +SAPA+ W+E EE EEE +E+E+E EKE+VKVKKSLKWLMEEENRER+  +       ++
Sbjct: 241 KSAPARRWME-EESEEEDDEKEKEKEKEKVKVKKSLKWLMEEENRERVVMEMGTDFCRMI 300

Query: 301 SEKSRDLFSRSRSWKV 303
           S+ +++ F+RS+SWKV
Sbjct: 301 SDNAKE-FTRSQSWKV 310

[Close]

BLAST of Lcy12g014400 vs. ExPASy TrEMBL
Match: A0A6J1D3C2 (uncharacterized protein LOC111016595 OS=Momordica charantia OX=3673 GN=LOC111016595 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 8.7e-112
Identity = 246/327 (75.23%), Postives = 261/327 (79.82%), Query Frame = 0


Query: 1   MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRK--SA 60
           MK GR+ K I S DLLVCFPSRS+L LMP PLCSPARG DSNKLRRS R HHRRRK  SA
Sbjct: 1   MKLGRDAKAIHSADLLVCFPSRSNLTLMPKPLCSPARGLDSNKLRRSHRHHHRRRKSTSA 60

Query: 61  ESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPK--SSKSWQSVMEEIERIHNRRKLRR 120
            SP++WAK KTMGSE+SEPSSPKVTCAGQIKIRPK  S KSWQSVMEEIERIHNRRKLRR
Sbjct: 61  ASPLIWAKPKTMGSEISEPSSPKVTCAGQIKIRPKTGSCKSWQSVMEEIERIHNRRKLRR 120

Query: 121 RRFNWVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKS 180
           RR NWVESLGFKKD+MQFLTCLR+IRFDFRCF+AFPEADFTT   EE++EEEEEEEE KS
Sbjct: 121 RRSNWVESLGFKKDIMQFLTCLRNIRFDFRCFKAFPEADFTT---EEEDEEEEEEEEGKS 180

Query: 181 PGNQVGVEGSESSSTAFSKWFMVLQESGRERRSFCSVEDGSIEPPMAPPKNALLLMRCRS 240
             NQVGVEG+ESS TAFSKWFMVLQESG      C   +G   PP+APPKNALLLMRCRS
Sbjct: 181 QENQVGVEGNESSRTAFSKWFMVLQESGAS-NGICRESNG---PPLAPPKNALLLMRCRS 240

Query: 241 APAKSWLELEEEEEETEEEEEEAEKE--------EVKVKKSLKWLMEEENRERL------ 300
           APAKSW E EEEEEE EEEEEE E+E        EVKVKKSLKWLMEEENRERL      
Sbjct: 241 APAKSWQEEEEEEEEEEEEEEEEEEEAAAEEDEKEVKVKKSLKWLMEEENRERLVMEMGP 300

Query: 301 -----SSDIVSEK--SRDLFSRSRSWK 302
                SS+I  E    RDLFSRSRSWK
Sbjct: 301 DFCRMSSEIAKETWVGRDLFSRSRSWK 320

[Close]

BLAST of Lcy12g014400 vs. ExPASy TrEMBL
Match: A0A5D3D503 (Transcription initiation factor IIE subunit alpha-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001490 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 2.4e-109
Identity = 230/316 (72.78%), Postives = 259/316 (81.96%), Query Frame = 0


Query: 1   MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAE 60
           MK  RE +KGIPS DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R  HRRRKSAE
Sbjct: 8   MKLNREKSKGIPSADLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLDHRRFHRRRKSAE 67

Query: 61  SPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNRRKLRRRRF 120
           SPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQSVMEEIERIHNRRKLRRRRF
Sbjct: 68  SPVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRF 127

Query: 121 NWVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGN 180
            WVES GFKKD+MQFLTCLR+IRFDFRCFRAFPE DFTTEE+EE+EEEEE+E+      N
Sbjct: 128 RWVESFGFKKDIMQFLTCLRTIRFDFRCFRAFPETDFTTEEEEEEEEEEEDEK------N 187

Query: 181 QVGVEGSESSSTAFSKWFMVLQESG-----RERRSFCSVEDGSIEPPMAPPKNALLLMRC 240
           QVG+E +ESS TAFSKWFMVLQE+G     R+ +S C+ +D SIE  MAPP NALLLMRC
Sbjct: 188 QVGIEENESSRTAFSKWFMVLQENGSNELKRDSKSLCNEDDESIEAIMAPPINALLLMRC 247

Query: 241 RSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERLSSD-------IV 300
           RSAPA+ W+       E E EE + EKE+VKVKKSLKWLMEEENRERL  +       + 
Sbjct: 248 RSAPARRWM-------EEESEEGDDEKEKVKVKKSLKWLMEEENRERLVVEMGTDFCRMT 307

Query: 301 SEKSRDLFSRSRSWKV 303
           S+ +++ F+RS+SWKV
Sbjct: 308 SDNAKE-FTRSQSWKV 309

[Close]

BLAST of Lcy12g014400 vs. ExPASy TrEMBL
Match: A0A1S3B949 (uncharacterized protein LOC103487551 OS=Cucumis melo OX=3656 GN=LOC103487551 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 2.4e-109
Identity = 230/316 (72.78%), Postives = 259/316 (81.96%), Query Frame = 0


Query: 1   MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAE 60
           MK  RE +KGIPS DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R  HRRRKSAE
Sbjct: 8   MKLNREKSKGIPSADLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLDHRRFHRRRKSAE 67

Query: 61  SPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNRRKLRRRRF 120
           SPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQSVMEEIERIHNRRKLRRRRF
Sbjct: 68  SPVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRF 127

Query: 121 NWVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGN 180
            WVES GFKKD+MQFLTCLR+IRFDFRCFRAFPE DFTTEE+EE+EEEEE+E+      N
Sbjct: 128 RWVESFGFKKDIMQFLTCLRTIRFDFRCFRAFPETDFTTEEEEEEEEEEEDEK------N 187

Query: 181 QVGVEGSESSSTAFSKWFMVLQESG-----RERRSFCSVEDGSIEPPMAPPKNALLLMRC 240
           QVG+E +ESS TAFSKWFMVLQE+G     R+ +S C+ +D SIE  MAPP NALLLMRC
Sbjct: 188 QVGIEENESSRTAFSKWFMVLQENGSNELKRDSKSLCNEDDESIEAIMAPPINALLLMRC 247

Query: 241 RSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERLSSD-------IV 300
           RSAPA+ W+       E E EE + EKE+VKVKKSLKWLMEEENRERL  +       + 
Sbjct: 248 RSAPARRWM-------EEESEEGDDEKEKVKVKKSLKWLMEEENRERLVVEMGTDFCRMT 307

Query: 301 SEKSRDLFSRSRSWKV 303
           S+ +++ F+RS+SWKV
Sbjct: 308 SDNAKE-FTRSQSWKV 309

[Close]

BLAST of Lcy12g014400 vs. ExPASy TrEMBL
Match: A0A6J1FBW7 (uncharacterized protein LOC111442647 OS=Cucurbita moschata OX=3662 GN=LOC111442647 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 5.1e-104
Identity = 219/305 (71.80%), Postives = 241/305 (79.02%), Query Frame = 0


Query: 1   MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSAESP 60
           MK  R+TK  PS DLLVCFPSRSH ALMPNPLCSPAR SDSNKLRR   +HRRRKSAESP
Sbjct: 1   MKSIRDTKANPSPDLLVCFPSRSHFALMPNPLCSPARASDSNKLRR---YHRRRKSAESP 60

Query: 61  VVWAKAKTM-GSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNRRKLRRRRFN 120
           VVWAKAKTM GSE+SEPSSPKVTCAGQIK+RPKS KSW+SVMEEIERIHNRR+LRRRRFN
Sbjct: 61  VVWAKAKTMGGSEVSEPSSPKVTCAGQIKMRPKSRKSWESVMEEIERIHNRRELRRRRFN 120

Query: 121 WVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGNQ 180
           WVESLGFKKD+MQFLTCLRS+RFDF CF AFPEA+FT+E++EE+E               
Sbjct: 121 WVESLGFKKDIMQFLTCLRSLRFDFGCFGAFPEAEFTSEDEEEEE--------------- 180

Query: 181 VGVEGSESSSTAFSKWFMVLQESG--RERRSFCSVEDGSIEPPMAPPKNALLLMRCRSAP 240
           VGVEGS+ S TAFSKWFMVLQ SG  R+    C+V+D SI PPMAPP+NALLLMRCRSAP
Sbjct: 181 VGVEGSDGSRTAFSKWFMVLQGSGVRRDGNGLCTVDDASIGPPMAPPRNALLLMRCRSAP 240

Query: 241 AKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERLSSDIVSEKSRDLFSRS 300
           AKSW+E        E   EE E+ EVKVKKSLKWLMEEENRE          SRDL +RS
Sbjct: 241 AKSWVE--------EGCSEEGEETEVKVKKSLKWLMEEENRE----------SRDLVTRS 269

Query: 301 RSWKV 303
           +SWKV
Sbjct: 301 QSWKV 269

[Close]

BLAST of Lcy12g014400 vs. NCBI nr
Match: XP_038898663.1 (transcription initiation factor IIE subunit alpha [Benincasa hispida])

HSP 1 Score: 446.8 bits (1148), Expect = 1.5e-121
Identity = 254/325 (78.15%), Postives = 273/325 (84.00%), Query Frame = 0


Query: 1   MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLH-HRRRKSAES 60
           MK GRE KGIPS DLLVCFPSRSHLALMPNPLCSPARGSDS+K R S  H HRRRKSAES
Sbjct: 1   MKLGRENKGIPSADLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLSHRHYHRRRKSAES 60

Query: 61  PVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNRRKLRRRRFN 120
           PVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQSVMEEIERIHNRRKLRRRRF+
Sbjct: 61  PVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRFH 120

Query: 121 WVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGNQ 180
           WVESLGFKKD+MQFLTCLR+IRFDFRCFRAFP  DFTTEE    EEEEEEEEEEKS GNQ
Sbjct: 121 WVESLGFKKDIMQFLTCLRNIRFDFRCFRAFPATDFTTEE----EEEEEEEEEEKSQGNQ 180

Query: 181 VGVEGSESSSTAFSKWFMVLQESG-----RERRSFCSVEDGSIEPPMAPPKNALLLMRCR 240
           VGV+ +ESS TAFSKWFMVLQE+G     RE +  CS +D SIE  MAPPKNALLLMRCR
Sbjct: 181 VGVDENESSRTAFSKWFMVLQENGSNELKRESKILCSDDDVSIEAAMAPPKNALLLMRCR 240

Query: 241 SAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERL-----------SS 300
           SAPAK WLE EE EEE ++++++ EKEEVKVKKSLKWLMEEENRERL           +S
Sbjct: 241 SAPAKRWLE-EESEEEEDDDDDDDEKEEVKVKKSLKWLMEEENRERLVMETGTDFCRMTS 300

Query: 301 DI------VSEKSRDLFSRSRSWKV 303
           DI      VSEKSRDLF+RS SWKV
Sbjct: 301 DIAKETWVVSEKSRDLFTRSHSWKV 320

[Close]

BLAST of Lcy12g014400 vs. NCBI nr
Match: XP_004142611.2 (transcription initiation factor IIE subunit alpha [Cucumis sativus] >KAE8649637.1 hypothetical protein Csa_012410 [Cucumis sativus])

HSP 1 Score: 420.2 bits (1079), Expect = 1.5e-113
Identity = 235/316 (74.37%), Postives = 271/316 (85.76%), Query Frame = 0


Query: 1   MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAE 60
           MK  RE +KGIPS+DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R +HRRRKSAE
Sbjct: 11  MKLNREKSKGIPSSDLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLDYRRYHRRRKSAE 70

Query: 61  SPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNRRKLRRRRF 120
           SPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQSVMEEIERIHNRRKLRRRRF
Sbjct: 71  SPVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRF 130

Query: 121 NWVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGN 180
           NW+ES GFKKD+MQFLTCLR++RFDFRCFRAFPE DFTTEE+EE+EEEEEEEEE+    N
Sbjct: 131 NWIESFGFKKDIMQFLTCLRTMRFDFRCFRAFPETDFTTEEEEEEEEEEEEEEEK----N 190

Query: 181 QVGVEGSESSSTAFSKWFMVLQESG-----RERRSFCSVEDGSIEPPMAPPKNALLLMRC 240
           QVG+E +ESS TAFSKWFMVLQE+G     R+  S C  +D SIE  MAPP+NALLLMRC
Sbjct: 191 QVGIEENESSRTAFSKWFMVLQENGSNELKRDSNSRCYEDDESIEATMAPPRNALLLMRC 250

Query: 241 RSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERLSSD-------IV 300
           +SAPA+ W+E EE EEE +E+E+E EKE+VKVKKSLKWLMEEENRER+  +       ++
Sbjct: 251 KSAPARRWME-EESEEEDDEKEKEKEKEKVKVKKSLKWLMEEENRERVVMEMGTDFCRMI 310

Query: 301 SEKSRDLFSRSRSWKV 303
           S+ +++ F+RS+SWKV
Sbjct: 311 SDNAKE-FTRSQSWKV 320

[Close]

BLAST of Lcy12g014400 vs. NCBI nr
Match: XP_022147766.1 (uncharacterized protein LOC111016595 [Momordica charantia])

HSP 1 Score: 413.3 bits (1061), Expect = 1.8e-111
Identity = 246/327 (75.23%), Postives = 261/327 (79.82%), Query Frame = 0


Query: 1   MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRK--SA 60
           MK GR+ K I S DLLVCFPSRS+L LMP PLCSPARG DSNKLRRS R HHRRRK  SA
Sbjct: 1   MKLGRDAKAIHSADLLVCFPSRSNLTLMPKPLCSPARGLDSNKLRRSHRHHHRRRKSTSA 60

Query: 61  ESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPK--SSKSWQSVMEEIERIHNRRKLRR 120
            SP++WAK KTMGSE+SEPSSPKVTCAGQIKIRPK  S KSWQSVMEEIERIHNRRKLRR
Sbjct: 61  ASPLIWAKPKTMGSEISEPSSPKVTCAGQIKIRPKTGSCKSWQSVMEEIERIHNRRKLRR 120

Query: 121 RRFNWVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKS 180
           RR NWVESLGFKKD+MQFLTCLR+IRFDFRCF+AFPEADFTT   EE++EEEEEEEE KS
Sbjct: 121 RRSNWVESLGFKKDIMQFLTCLRNIRFDFRCFKAFPEADFTT---EEEDEEEEEEEEGKS 180

Query: 181 PGNQVGVEGSESSSTAFSKWFMVLQESGRERRSFCSVEDGSIEPPMAPPKNALLLMRCRS 240
             NQVGVEG+ESS TAFSKWFMVLQESG      C   +G   PP+APPKNALLLMRCRS
Sbjct: 181 QENQVGVEGNESSRTAFSKWFMVLQESGAS-NGICRESNG---PPLAPPKNALLLMRCRS 240

Query: 241 APAKSWLELEEEEEETEEEEEEAEKE--------EVKVKKSLKWLMEEENRERL------ 300
           APAKSW E EEEEEE EEEEEE E+E        EVKVKKSLKWLMEEENRERL      
Sbjct: 241 APAKSWQEEEEEEEEEEEEEEEEEEEAAAEEDEKEVKVKKSLKWLMEEENRERLVMEMGP 300

Query: 301 -----SSDIVSEK--SRDLFSRSRSWK 302
                SS+I  E    RDLFSRSRSWK
Sbjct: 301 DFCRMSSEIAKETWVGRDLFSRSRSWK 320

[Close]

BLAST of Lcy12g014400 vs. NCBI nr
Match: XP_008444111.1 (PREDICTED: uncharacterized protein LOC103487551 [Cucumis melo] >KAA0064246.1 transcription initiation factor IIE subunit alpha-like [Cucumis melo var. makuwa] >TYK18616.1 transcription initiation factor IIE subunit alpha-like [Cucumis melo var. makuwa])

HSP 1 Score: 405.2 bits (1040), Expect = 4.9e-109
Identity = 230/316 (72.78%), Postives = 259/316 (81.96%), Query Frame = 0


Query: 1   MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAE 60
           MK  RE +KGIPS DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R  HRRRKSAE
Sbjct: 8   MKLNREKSKGIPSADLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLDHRRFHRRRKSAE 67

Query: 61  SPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNRRKLRRRRF 120
           SPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQSVMEEIERIHNRRKLRRRRF
Sbjct: 68  SPVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRF 127

Query: 121 NWVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGN 180
            WVES GFKKD+MQFLTCLR+IRFDFRCFRAFPE DFTTEE+EE+EEEEE+E+      N
Sbjct: 128 RWVESFGFKKDIMQFLTCLRTIRFDFRCFRAFPETDFTTEEEEEEEEEEEDEK------N 187

Query: 181 QVGVEGSESSSTAFSKWFMVLQESG-----RERRSFCSVEDGSIEPPMAPPKNALLLMRC 240
           QVG+E +ESS TAFSKWFMVLQE+G     R+ +S C+ +D SIE  MAPP NALLLMRC
Sbjct: 188 QVGIEENESSRTAFSKWFMVLQENGSNELKRDSKSLCNEDDESIEAIMAPPINALLLMRC 247

Query: 241 RSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERLSSD-------IV 300
           RSAPA+ W+       E E EE + EKE+VKVKKSLKWLMEEENRERL  +       + 
Sbjct: 248 RSAPARRWM-------EEESEEGDDEKEKVKVKKSLKWLMEEENRERLVVEMGTDFCRMT 307

Query: 301 SEKSRDLFSRSRSWKV 303
           S+ +++ F+RS+SWKV
Sbjct: 308 SDNAKE-FTRSQSWKV 309

[Close]

BLAST of Lcy12g014400 vs. NCBI nr
Match: XP_022935869.1 (uncharacterized protein LOC111442647 [Cucurbita moschata] >XP_022935870.1 uncharacterized protein LOC111442647 [Cucurbita moschata])

HSP 1 Score: 387.5 bits (994), Expect = 1.1e-103
Identity = 219/305 (71.80%), Postives = 241/305 (79.02%), Query Frame = 0


Query: 1   MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSAESP 60
           MK  R+TK  PS DLLVCFPSRSH ALMPNPLCSPAR SDSNKLRR   +HRRRKSAESP
Sbjct: 1   MKSIRDTKANPSPDLLVCFPSRSHFALMPNPLCSPARASDSNKLRR---YHRRRKSAESP 60

Query: 61  VVWAKAKTM-GSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNRRKLRRRRFN 120
           VVWAKAKTM GSE+SEPSSPKVTCAGQIK+RPKS KSW+SVMEEIERIHNRR+LRRRRFN
Sbjct: 61  VVWAKAKTMGGSEVSEPSSPKVTCAGQIKMRPKSRKSWESVMEEIERIHNRRELRRRRFN 120

Query: 121 WVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGNQ 180
           WVESLGFKKD+MQFLTCLRS+RFDF CF AFPEA+FT+E++EE+E               
Sbjct: 121 WVESLGFKKDIMQFLTCLRSLRFDFGCFGAFPEAEFTSEDEEEEE--------------- 180

Query: 181 VGVEGSESSSTAFSKWFMVLQESG--RERRSFCSVEDGSIEPPMAPPKNALLLMRCRSAP 240
           VGVEGS+ S TAFSKWFMVLQ SG  R+    C+V+D SI PPMAPP+NALLLMRCRSAP
Sbjct: 181 VGVEGSDGSRTAFSKWFMVLQGSGVRRDGNGLCTVDDASIGPPMAPPRNALLLMRCRSAP 240

Query: 241 AKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERLSSDIVSEKSRDLFSRS 300
           AKSW+E        E   EE E+ EVKVKKSLKWLMEEENRE          SRDL +RS
Sbjct: 241 AKSWVE--------EGCSEEGEETEVKVKKSLKWLMEEENRE----------SRDLVTRS 269

Query: 301 RSWKV 303
           +SWKV
Sbjct: 301 QSWKV 269

[Close]

BLAST of Lcy12g014400 vs. TAIR 10
Match: AT1G78110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). )

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-61
Identity = 170/341 (49.85%), Postives = 210/341 (61.58%), Query Frame = 0


Query: 12  STDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSA---------ESPVV 71
           S DLLVCFPSR+HLAL P P+CSP+R SDS+  RR   HHRR+ S           SPV+
Sbjct: 17  SADLLVCFPSRTHLALTPKPICSPSRPSDSSTNRRP--HHRRQLSKLSGGGGGGHGSPVL 76

Query: 72  WAK---AKTM-GSEMSEPSSPKVTCAGQIKIRPKS----SKSWQSVMEEIERIHNRRKLR 131
           WAK   +K M G E++EP+SPKVTCAGQIK+RP       K+WQSVMEEIERIH+ R   
Sbjct: 77  WAKQASSKNMGGDEIAEPTSPKVTCAGQIKVRPSKCGGRGKNWQSVMEEIERIHDNRSQS 136

Query: 132 RRRFNWVESLGFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEK 191
           +         G KKD+M FLTCLR+I+FDFRCF  F  AD T+++DEE++++++EEEE  
Sbjct: 137 K-------FFGLKKDVMGFLTCLRNIKFDFRCFGDFRHADVTSDDDEEEDDDDDEEEE-- 196

Query: 192 SPGNQVGVEGSESSSTAFSKWFMVLQESGRER-----RSFC----SVEDGSIEPPMAPPK 251
                V  E  E+S T FSKWFMVLQE    +      + C     +ED   EP + PP 
Sbjct: 197 ----VVEGEEEENSKTVFSKWFMVLQEEQNNKDDDKNNNKCDEKRDLEDTETEPAV-PPP 256

Query: 252 NALLLMRCRSAPAKSWLE------LEEEEEETEEEEEEAEKEEVKV---KKSLKWLMEEE 302
           NALLLMRCRSAPAKSWLE       E+E+ E ++EE+E E +E  +   KK L+ LMEEE
Sbjct: 257 NALLLMRCRSAPAKSWLEERMKVKTEQEKREEQKEEKETEDQETSMKTKKKDLRSLMEEE 316

[Close]

BLAST of Lcy12g014400 vs. TAIR 10
Match: AT1G22230.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78110.1); Has 2358 Blast hits to 1759 proteins in 159 species: Archae - 2; Bacteria - 36; Metazoa - 1046; Fungi - 203; Plants - 157; Viruses - 72; Other Eukaryotes - 842 (source: NCBI BLink). )

HSP 1 Score: 178.7 bits (452), Expect = 6.9e-45
Identity = 148/324 (45.68%), Postives = 180/324 (55.56%), Query Frame = 0


Query: 12  STDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSAESPVVWAKAKTMG- 71
           S DL+VCFPSR+HL+L    + SP   S S   R++  HHRR  S  S       +  G 
Sbjct: 13  SADLMVCFPSRAHLSLPSKSISSP---SSSFNRRQNAPHHRRSISKLSSSGGGVRQNRGG 72

Query: 72  --SEMSEPSSPKVTCAGQIKIRPK----SSKSWQSVMEEIERIHNRRKLRRRRFNWVESL 131
               + EP+SPKVTCAGQIK+R        K+WQS+M EIE+IH R K   + F      
Sbjct: 73  GREVVEEPTSPKVTCAGQIKVRSSKRDGGGKNWQSLMAEIEKIH-RSKSESKFF------ 132

Query: 132 GFKKDLMQFLTCLRSIRFDFRCFRAFPEADFTTEEDEEDEEEEEEEEEEKSPGNQVGVEG 191
           G K+D+M FLTCLR   FDFRCF AFP  D  ++++EEDEEEEEE+EEE         + 
Sbjct: 133 GIKRDVMGFLTCLRD--FDFRCFGAFPPVDIISDDEEEDEEEEEEDEEE---------DE 192

Query: 192 SESSSTAFSKWFMVLQESGRERRSFCSVEDGSIEPPMA-PPKNALLLMRCRSAPAKSWLE 251
            ESS T FSKW MVL E           E+   +   A PP NALLLMRCRSAP K+W  
Sbjct: 193 DESSGTVFSKWLMVLHEKQNNEECVDGKENVFSDVETAVPPPNALLLMRCRSAPVKNW-- 252

Query: 252 LEEEEEETEE---------EEEEAEKEEVKVKKSLKWLMEEE------------NRERLS 302
            EE++EETEE         EEEE EK+ V  KK L+ LMEEE            N  +LS
Sbjct: 253 SEEKKEETEEGDNRVKQSGEEEEEEKDRVGNKKDLRSLMEEEKKMNLVVMNYDTNYYKLS 312

The following BLAST results are available for this feature:

BLAST of Lcy12g014400 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g014400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Z4	7.1e-114	74.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377750 PE=4 SV=1	[more]
A0A6J1D3C2	8.7e-112	75.23	uncharacterized protein LOC111016595 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A5D3D503	2.4e-109	72.78	Transcription initiation factor IIE subunit alpha-like OS=Cucumis melo var. maku...	[more]
A0A1S3B949	2.4e-109	72.78	uncharacterized protein LOC103487551 OS=Cucumis melo OX=3656 GN=LOC103487551 PE=...	[more]
A0A6J1FBW7	5.1e-104	71.80	uncharacterized protein LOC111442647 OS=Cucurbita moschata OX=3662 GN=LOC1114426...	[more]

BLAST of Lcy12g014400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898663.1	1.5e-121	78.15	transcription initiation factor IIE subunit alpha [Benincasa hispida]	[more]
XP_004142611.2	1.5e-113	74.37	transcription initiation factor IIE subunit alpha [Cucumis sativus] >KAE8649637....	[more]
XP_022147766.1	1.8e-111	75.23	uncharacterized protein LOC111016595 [Momordica charantia]	[more]
XP_008444111.1	4.9e-109	72.78	PREDICTED: uncharacterized protein LOC103487551 [Cucumis melo] >KAA0064246.1 tra...	[more]
XP_022935869.1	1.1e-103	71.80	uncharacterized protein LOC111442647 [Cucurbita moschata] >XP_022935870.1 unchar...	[more]

BLAST of Lcy12g014400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78110.1	1.8e-61	49.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G22230.1	6.9e-45	45.68	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 153..173
None	No IPR available	COILS	Coil	Coil	coord: 239..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..174
None	No IPR available	PANTHER	PTHR33448	CHLOROPLAST PROTEIN HCF243-RELATED	coord: 3..301
None	No IPR available	PANTHER	PTHR33448:SF3	OS09G0370000 PROTEIN	coord: 3..301

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g014400.1	Lcy12g014400.1	mRNA