Lcy12g013660 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g013660
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	sister chromatid cohesion protein PDS5 homolog A
Location	Chr12: 41666535 .. 41673034 (+)
RNA-Seq Expression	Lcy12g013660
Synteny	Lcy12g013660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGTCTTCGCTGCAGCTCATCCACGACGTCGGGACTAAATTGTGCAAACAGTCTCGCCCAACTAAGGATTACATCGTCAAATCCCTCCGGGTAATGTTTCTACTCTGAATTTACTTTCGTAATTCCGTTTCTGAATCTCTCCAGTCAGTCTGATCGCTCGCATTGTCGTCGGGGTGTTCTTCGCTGCTTACTGTCGACTGAGCAAGTTGATAATGGTCCTGTTTTCGTGGCTAATCGTAAGTTGATACACGTTTTGTTCGTTTTCACGAAGATTGAAGGGTTTTTATAGGGTTTTGTTCAAAATTTTGGGCGAAAACTTGTCAATGTAGTATTTTGTTTCCTAATTATCTTCAATTAAGAATGTTAGAAGGATACGCTTCTGTTCATACTGACGCAGTCCTGCTAGTGAAGAATGTGCGTAGTTCGTTCCAGTTGGTTGAACTTGGACCTTCCGGCACTAATAGCTCGTTCTCTCCATCTGTCTCTCTGCACCCACAGCTAACAGCTCTTGAGCTGATGGACACAACCAATTCTATTGAGTGTTAAAAGAATTACGCATTGAAATTGTCGGTTATTCGGTTGTATTTTGTTTTCACACGTAAATCCGAATATGTCTGTTGAATTTTTTATCTTATACATTTACGAATATTTTGTTTATGAGATTTTGTTAATTTCTTAGAATGAAAATAATTCATCCTTTTCTGTATTATCCCATCGATAAAACTTCAAGTCTCGTTTTTTTTAGCGCCAATTCATGAATTATCATGTATTCCTCGTTACTCGATCTTCCATTTTTCCATTGCAGCAAGTTGTAGACGCTTTTGCATGTTTGGAACAGCCTTACGTCCCAGATGCTACAAGGAAGTCAGAATCAACTAAAATATTAGAGAGTTCTATAAAGCCTCTAAGGAAATCTATAATTAATGGTCTTCTACGAAATAGAGATAAAGATGTGAGATTTCTATTTGCTATATGAGTGAGTGAAATTTTTCGGGTCATGGCACCAGAACCACCTTTTGAAGACAAATATCTAAGGGTAACAAATCATTAATTTCGATGAAATGCACACTCTCTCTTTGCACATATATTGGCTCTTCATGTCATTAATTCATGTTCATCTTTCTGTTTACTATACAATTGATCCCATTTTTTTTTTAAAAAAAATTATAGGATGTTTTTATACTTCTTTTGAGTTCTTTTTCAGAGCTAGCGGATATGACAAGTCCACTTTTCTCTCGGAGGGTTAAAATACTAGAGACAGTGGCACGATGTAAATGCTGTGTGATAATGCTTGACGTTGGATGCAATGACTTGGTGTTGGAGATGTTTAATACATTTTTCTCTGCTTTGAGGTCAGTACCCTTTATCTTGCAATGCTCTAGTATTGGTACTTGCGCTCTTTTTTTCAGTGTGTTTAATAAATATTACTGATTTTCTGTTATGCCAATTTTTTAAGTAACTTTTTTTTTTTTGGTTTATTCAATTAGGTATCTCACTTTCTTCTGTTCTTCTTTACCCTGCAAACGAAAGATCAACACAGTCCAAACCAAAAGAACACAACAGCTGGAATTCCAACCCATCACAGAGAGTTCTTCTATGACTAGGAGGAAGTTATCTATTCCGCAAAGGATTCCCCAAAACAGAGTTTTGTTCCAACAAAATACAACTAGATCAGCACAGAAACTAAGAACACATAAGAAGAAATAAGTAGCAAGAACAAGCTAAACACTCGGTATTCGAGAGATTGAGACTCTCCAAGGGCCAAGCCTATTCCAAAACATTCCACCCTCCTCCCCAGCTGTCCTCACTCCTACAAAAAGCTTCTTTGAGTCTAACAGCCATACACTCCATGATGCCAAGGCCTAACGGTCCCCACTGTAGCCAACTTCTCCTTCTTCATTCGTATTTAACTCTTTGCCCTTTCTCTTGTATGTGTGTATTATTGGAGGTCTAACATATTCCTCCAAGTATTTTACAACCGAGGCCTTAAATTTCCCAAATATTGTTCTCAATACTTTCAACTTTAATAGGTCAGTTTTGTTGTGTTCAAGAGTACAGGTTGTATTATATATTGGATATTTGTAGTTTGTTAGAGGAAGAATTTAATTTTTGCTGTGCCTTTATAGGATTTTTATCACAAAAAAAAAAGTTTGTTTTATGCTCTGTTATAATTATAAACAAGTTATTTTCAAAAAAAAAAATATAATAATAAATAATTATAAACAAGTTCCCTTTGAGGCAGTGGATTCATGTTGGGGAGTATTCAATATAGTTCCCTTTCTAGCCCTTAACTAAAATGTCTATGATATGCCCTTTTGCTCGCTCATTTTTCTTTAATACATGTAAGTTTGAAATAGAGACAACAAGTTGTCACTTGTAGAAAATATGTAATTTTGGATGATATAGGTTGTTAGTGTATTTAGTGTAATAATTTCTATTAGACTCAAAAATCAACTTGTCATCTGTATTTTATGCATGCTGTTCTATATTTTATTTGTTGGTTTACATTCACCGTACAAACCTTTTGAGTTGTTTCATATTTACAATAACTCTTTTTTCTATAGGGACTACCACGAGCCTAGTTTGGTTAACAACATTTTGTCAATAATGACCCATATTCTAAGTGAGGATGCTTCTCTACCACTAGTAGATGTGGTTTTGCATAATCTTCTAAAGGAAGAAAAGGTAAGTATAATAGATTGATGTTTTTTACCCTACCTGCTTTGGAGTGATTAGAAATATTCTTTACAGTCATTGTTATTATCTTGTACTTACATAGTTCAGTACGATAGTTTTAATAATCTTGTTGACTGATGGTGAGTTGTATAATTAGTTGATTTGGTGAGATAGGGAAATTTAGGGCTATTTGATTAATAAAAATCTAATGTTTACAATAGGGAACCTGAGTATTTATCGGCTAGGTTTAAGGGTAAAGGAAATAACTTCATGAGGTAAACAACCCTTAATCTACGGTTACTAGAAAACTTTCTAACCGAACATAAAGTTAACTAGAACATACAATTTAAAAAAATGTTGAGTTTACCAGACAAGTGTAACACGTAGGTTGTTATTCCTAAATCTCTTCACGATTTTGCAAAGCTCAAATGATGACAACACAAATTTTGCTACATCCTTGTGAAGCTGAGGCCAATAAAATGTAATGGTAATTTTGGCTAAAGTTTTATCATGCCTAAAATGTCCACCAATTCCCTAACATGTATGTCCATAATCACTTTTCTGCCTAAGAGATATGTGATATGCAGACTGCAGAGAGCAACCTATTTTCTTTAGAAAGAAATCCTTTAGTGATATCGAGGTCTTCCTTTCTAAGCATGTCTATTTTTACAGTTATTCCAAATCATAGAAAAATTTTCATCATTTTCATATAATTTTGGAATATTTTCCAATGAGACTTGCCCACCCACGATAGATAATTAATGAGATTCTACTTAAAGCACCAATCGCCTTATTGGTGACACAAAAGTTATGTTTAATCAAAAAGTCAGAGCATCATAAGAATGATGTCCATCTAGCATAGTTTTTCATTTTTGGTTGGATAAAGGCATCATAGATTTTCGTGATTAGAGTCTAGAATAAAATTTTCACTAATGTAGACTCTTTATATAATAACCAATAAGCAGTTGGCTAAGTTTTTGATTTGATACCTTCAAATTCTCATCAGCAAGCTACGAATGTTCAAACATTTTTTAACCAACTTGAGAAGAGTTGAAAGTGACGGTTCTTCCTCTCTTATGAATCTTAGTTAATAGCCATCTGATAATTTGACTTCCAGATGCTTGTCATTAGATCTACAGCTGATCTCCAGCGTGCTCTAATAATTTCCTATTAATAAACAAACTCCCTCCTTTTGCATGTCACTGCAGTGATTATATTTATTTTTTGTTTTGGGAAATTCGTGTTTCTATTATAGGTGCTTGCCATTAGATCTACATCTAATCTCCTGTGTGCTAATAGTTTCCAATTTATAAACAATCTCGTTTTGCAGATCACTGCAGAAAGATTTTATTTATTTTTTGTTTTTGGAAACTTTTGTATCTATATTAGGCCTTGATTTGATTAGTGAAGGACAAATAATTTCTTTTGAAACATGTGTTCGAGTTACTCTGTGTTGCCCTGACAACTTGTTAGACCCCCAATATTGCACACGTATGCGAGGAGGGGTAGGAGAGGAAATTCACCCTCGATCTAGGCGGTTAATAGAAGATAAAGAAAGAAGATTAGTGTAATGTAAATAGTTAGCAGTCAATCGGTGTCATCGATGGGGAGTATCTGAATTTTGGGTAGTATATAATGTATTTTTGTTCGGAGAATGGGGATATGAAAAATCCTTAAGTTTGTATACTCTTATCAAGAATGATAAGAGAGTAGGAGACCTCACCATCTCAAACTGGTGTTTGTAACCGATTTCTGTTGATAAATAAAAGCTTTCCTACTAGCTTCCTCACTCTCTGTAATCTGGAATCCTAACAATCTGGTATTTTTGTTCGGAGAATGGGGATATGAAAAATCCTTAAGTTTGTATACTCTTATCAAGAATGATAAGAGAGTAGGAGACCTCACCATCTCAAACTGGTGTTTGTAACCGATTTCTGTTGATAAATAAAAGCTTTCCTACTAGCTTCCTCACTCTCTGTAATCTGGAATCCTAACAATCTGGTATTTTTGTTCGGAGAATGGGGATATGAAAAATCCTTAAGTTTGTATACTCTTATCAAGAATGATAAGAGAGTAGGAGACCTCACCATCTCAAACTGGTGTTTGTAACCGATTTCTGTTGATAAATAAAAGCTTTCCTACTAGCTTCCTCACTCTCTGTAATCTGGAATCCTAACACAACTCTCCTTTTCACATTTTGTAGGTTGAACCTACCGTTGCTTCTCGCCTAGCAGTTTCCATCATTGAAACTTGTGCCGAGACACTTGAACCATTTATTTGTGGATTCTTAACACTGGGGAGTGAACTCAAAGAATTTTACCATGAAATTATTTTTAGAATTTTCCAATGTGTCCCTCAAATGTTTCTTCCTGTGATTCCAAACTTGACTCTTGAGCTTTTGGTATGTCATTTTATTCCCTTTTCACTCTTGTATTGCAACAGTGGTATACAATTATTTGTTATGCTCACCCTCTTTTTCAATTCTTTTTTAAATAATCAATGGTTTCTATGATATAACGAAGTTAACAAAAGGCAGAATAAGACCAAATGAGTGACCATAATAATCTCCAATGTTATAATAAAAGGCAATACTAGCTATATATCTAGAAGATTATTAAAGTATTTACATAGATTGCTCAAATATATAATTAGTCCTTTCTAGATTTATCTTGAGTATTGTAAATAGACATCTAAAAGAAGCTCTAGAATTATCTTACCCTTTCTTTAGACTCCAAGGAATTCTAGAGAATTTCTTTAGATAAGGCTAAACATAGAAATATCTAGGATATTTTAGATCCAAGAAGAGCGTAGAAAAATTCTTTTGCTTGGTCTCTGAGGGTCTTATGTCTATAAATAGGAAGTGTGTCCCCCATAAGCAAGCCAAGTATACAAAGTGAGAAAGAGTGAGTGAGTCAGACCGTCTTTTCTCAAAAGTATCCATCCTTTTACTTTCTTAATAAAAGCTTCTTTCTTCCAAGTGTTTGTCTCTTCCCTTTTGTTCTAATTTCTTCAACATCCAATTGGTCTGATACACAAGATATAGGAGTAATTACGAAATGCTTTTGATTTTAGACTCCAAGAAGCAAAGACAACACGGATCTTGTCCAAGTTTTTTCCCCCTCATTTAAGACTCTTCCTTTACGTTTAAGCCAAATTTCACAAAACAATGCACAAAACAGGCCTAAAGTTGTTTCTTATTATCCTTGGAAGTCGTGCCCACAAAATTACTGAGCCACAAAATCTGTCAGATCTTAGATGTCTTCAGATGTATTATTATTATTATTATTTGTGCGTAAGTTCATTGGCAATGACAATTTTGGTTGAGGCAGTGGTGGGGATTTCTTTTTGAACTCTATTATTTGTGTTCAGCCGCCCCAGAAAAGAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAAAAACCAACTTTCATTGAGAAAAAATGAAAGAATACACGGGCATACAAAAAAACAAGCCCACAAAAAAGGAGCCCCAGAAAAGAGTCCATTAGACAACCTTACACTCCTAAGAGTTTTTGAACTCTAAAGCTCTTTGCAGAAAGCTGGCCGAAGAATAAGAACTCTTTTTGGCCTGATGTTTGGCGAGAGATTTAACAGAGAATATGTCACTCCTTTCAAGAAACCACCCTTTCTAATTCTCCCCAACTTCAACTTCAACCATCTAAACACTGCACCTAATGGTCTCTAATAGTCACTCCTACACAATTTCCAGGATGTTCACTTTGTTTGTTTCCTCATTATATCTCTATCCATTGTAGACAGATCAGGTTGATGTTAGAATAATAGCGGTTTAA

mRNA sequence

ATGGATGAGTCTTCGCTGCAGCTCATCCACGACGTCGGGACTAAATTGTGCAAACAGTCTCGCCCAACTAAGGATTACATCGTCAAATCCCTCCGGCAAGTTGTAGACGCTTTTGCATGTTTGGAACAGCCTTACGTCCCAGATGCTACAAGGAAGTCAGAATCAACTAAAATATTAGAGAGTTCTATAAAGCCTCTAAGGAAATCTATAATTAATGGTCTTCTACGAAATAGAGATAAAGATGATGTTTTTATACTTCTTTTGAGTTCTTTTTCAGAGCTAGCGGATATGACAAGTCCACTTTTCTCTCGGAGGGTTAAAATACTAGAGACAGTGGCACGATGTAAATGCTGTGTGATAATGCTTGACGTTGGATGCAATGACTTGGTGTTGGAGATGTTTAATACATTTTTCTCTGCTTTGAGGGACTACCACGAGCCTAGTTTGGTTAACAACATTTTGTCAATAATGACCCATATTCTAAGTGAGGATGCTTCTCTACCACTAGTAGATGTGGTTTTGCATAATCTTCTAAAGGAAGAAAAGGTTGAACCTACCGTTGCTTCTCGCCTAGCAGTTTCCATCATTGAAACTTGTGCCGAGACACTTGAACCATTTATTTGTGGATTCTTAACACTGGGGAGTGAACTCAAAGAATTTTACCATGAAATTATTTTTAGAATTTTCCAATGTGTCCCTCAAATGTTTCTTCCTGTGATTCCAAACTTGACTCTTGAGCTTTTGACAGATCAGGTTGATGTTAGAATAATAGCGGTTTAA

Coding sequence (CDS)

ATGGATGAGTCTTCGCTGCAGCTCATCCACGACGTCGGGACTAAATTGTGCAAACAGTCTCGCCCAACTAAGGATTACATCGTCAAATCCCTCCGGCAAGTTGTAGACGCTTTTGCATGTTTGGAACAGCCTTACGTCCCAGATGCTACAAGGAAGTCAGAATCAACTAAAATATTAGAGAGTTCTATAAAGCCTCTAAGGAAATCTATAATTAATGGTCTTCTACGAAATAGAGATAAAGATGATGTTTTTATACTTCTTTTGAGTTCTTTTTCAGAGCTAGCGGATATGACAAGTCCACTTTTCTCTCGGAGGGTTAAAATACTAGAGACAGTGGCACGATGTAAATGCTGTGTGATAATGCTTGACGTTGGATGCAATGACTTGGTGTTGGAGATGTTTAATACATTTTTCTCTGCTTTGAGGGACTACCACGAGCCTAGTTTGGTTAACAACATTTTGTCAATAATGACCCATATTCTAAGTGAGGATGCTTCTCTACCACTAGTAGATGTGGTTTTGCATAATCTTCTAAAGGAAGAAAAGGTTGAACCTACCGTTGCTTCTCGCCTAGCAGTTTCCATCATTGAAACTTGTGCCGAGACACTTGAACCATTTATTTGTGGATTCTTAACACTGGGGAGTGAACTCAAAGAATTTTACCATGAAATTATTTTTAGAATTTTCCAATGTGTCCCTCAAATGTTTCTTCCTGTGATTCCAAACTTGACTCTTGAGCTTTTGACAGATCAGGTTGATGTTAGAATAATAGCGGTTTAA

Protein sequence

MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILESSIKPLRKSIINGLLRNRDKDDVFILLLSSFSELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNNILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLTLGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV

Homology

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BLAST of Lcy12g013660 vs. ExPASy Swiss-Prot
Match: Q6A026 (Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus OX=10090 GN=Pds5a PE=1 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-11
Identity = 53/189 (28.04%), Postives = 95/189 (50.26%), Query Frame = 0


Query: 82  DVFILLLSSFSELADMTSPLFSRRVKILETVARCKCCVIMLDV-GCNDLVLEMFNTFFSA 141
           D+F+ +      L D  SP F+R   +LE +A  K   I  ++  CN++ +++F T FS 
Sbjct: 114 DIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSV 173

Query: 142 LRDYHEPSLVNNILSIMTHILSE--DASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIET 201
           + + H   +  ++L +M+ I+ E    +  L+D +L NL+   K     +  LA  +++ 
Sbjct: 174 INNSHNTKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKR 233

Query: 202 CAETLEPFICGF----LTLG----SELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTD 260
             +T+E  I  F    L LG    S+L E   ++I  +F   PQ+ L V+P L  +L ++
Sbjct: 234 TVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPQLLLSVMPQLEFKLKSN 293

[Close]

BLAST of Lcy12g013660 vs. ExPASy TrEMBL
Match: A0A6J1F9K0 (sister chromatid cohesion protein PDS5 homolog A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443537 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.6e-117
Identity = 235/295 (79.66%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRD+HEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDHHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. ExPASy TrEMBL
Match: A0A6J1FAC4 (sister chromatid cohesion protein PDS5 homolog A-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111443537 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.6e-117
Identity = 235/295 (79.66%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRD+HEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDHHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. ExPASy TrEMBL
Match: A0A6J1FF88 (sister chromatid cohesion protein PDS5 homolog A-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111443537 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.6e-117
Identity = 235/295 (79.66%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRD+HEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDHHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. ExPASy TrEMBL
Match: A0A6J1FFR6 (sister chromatid cohesion protein PDS5 homolog A-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111443537 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.6e-117
Identity = 235/295 (79.66%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRD+HEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDHHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. ExPASy TrEMBL
Match: A0A6J1FAD1 (sister chromatid cohesion protein PDS5 homolog A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443537 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.6e-117
Identity = 235/295 (79.66%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRD+HEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDHHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. NCBI nr
Match: XP_023536017.1 (sister chromatid cohesion protein PDS5 homolog A-like isoform X5 [Cucurbita pepo subsp. pepo] >XP_023536018.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.1 bits (1115), Expect = 8.4e-118
Identity = 236/295 (80.00%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRDYHEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDYHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. NCBI nr
Match: XP_023536012.1 (sister chromatid cohesion protein PDS5 homolog A-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023536013.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.1 bits (1115), Expect = 8.4e-118
Identity = 236/295 (80.00%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRDYHEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDYHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. NCBI nr
Match: XP_023536014.1 (sister chromatid cohesion protein PDS5 homolog A-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.1 bits (1115), Expect = 8.4e-118
Identity = 236/295 (80.00%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRDYHEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDYHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. NCBI nr
Match: XP_023536015.1 (sister chromatid cohesion protein PDS5 homolog A-like isoform X4 [Cucurbita pepo subsp. pepo] >XP_023536016.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.1 bits (1115), Expect = 8.4e-118
Identity = 236/295 (80.00%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRDYHEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDYHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. NCBI nr
Match: XP_023536009.1 (sister chromatid cohesion protein PDS5 homolog A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536010.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536011.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.1 bits (1115), Expect = 8.4e-118
Identity = 236/295 (80.00%), Postives = 245/295 (83.05%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           MD+SSLQLIHDVGTKL KQSRPTKD+IVKSLRQVVDAFACLEQ YVPDA+ KSE+ K +E
Sbjct: 1   MDQSSLQLIHDVGTKLSKQSRPTKDFIVKSLRQVVDAFACLEQSYVPDASGKSEAAKKME 60

Query: 61  SSIKPLRKSIINGLLRNRDKD----------------------------DVFILLLSSFS 120
           SSI PLRKSIINGLLRNRDKD                            DVFILLLSSFS
Sbjct: 61  SSINPLRKSIINGLLRNRDKDVRLLLAICVSEIFRVLAPEPPFEDKYLRDVFILLLSSFS 120

Query: 121 ELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNN 180
           ELAD TSPLFS RVKILETVARCKCCVIMLD+GCNDLVLEMFNTFFS LRDYHEPSLVNN
Sbjct: 121 ELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSVLRDYHEPSLVNN 180

Query: 181 ILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLT 240
           ILSIMTHILSEDASLPLVDVVLHNL+KEEK EPT ASRLAVSIIETCAETLEPFICGFLT
Sbjct: 181 ILSIMTHILSEDASLPLVDVVLHNLVKEEKGEPTAASRLAVSIIETCAETLEPFICGFLT 240

Query: 241 --------LGSELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
                   +GSELKEFYHEIIFRIFQCVPQM LPVIPNL LEL+TDQVDVRI AV
Sbjct: 241 SCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLALELVTDQVDVRIKAV 295

[Close]

BLAST of Lcy12g013660 vs. TAIR 10
Match: AT1G77600.1 (ARM repeat superfamily protein )

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-57
Identity = 134/318 (42.14%), Postives = 189/318 (59.43%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           M+++  Q++ ++ ++L + SRP KD +VK LR+V +  + ++Q   P AT K +  K++E
Sbjct: 1   MEKTPTQIVSELCSRLLQLSRPNKDSLVKLLREVANTLSKIDQ---PSATNKEKGLKLIE 60

Query: 61  SSIKPLRKSII-NGLLRNRDKD----------------------------DVFILLLSSF 120
           + ++PL+KSII + LL+NRD D                            D+F L ++ F
Sbjct: 61  AELRPLKKSIIKHALLKNRDNDVSLLVTVCVSELFRILAPHLPFEDEYLRDIFTLFIAEF 120

Query: 121 SELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLV- 180
           SEL+D  SP FS+R KILETV+R K C++MLD  C DLV EMFN FFS +R++H+ SL+ 
Sbjct: 121 SELSDTVSPYFSKRAKILETVSRLKFCLLMLDEDCQDLVHEMFNMFFSLVREHHQQSLIN 180

Query: 181 ---------------------NNILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVAS 240
                                NNIL+IM+ +L E+A+   V V+L NL+KE +   + A 
Sbjct: 181 QKSMKTQQRKANTQQTQHSLFNNILAIMSDVLEEEANSSFVVVILENLVKEGEDTTSGAD 240

Query: 241 RLAVSIIETCAETLEPFICGFLT--------LGSELKEFYHEIIFRIFQCVPQMFLPVIP 260
           +LA S+IE CA+ LEP IC FLT        + + LK+ YHEIIF+I    PQM L VIP
Sbjct: 241 KLASSLIERCADRLEPLICSFLTSCFMEKDSIQTNLKDSYHEIIFKISLIAPQMLLAVIP 300

[Close]

BLAST of Lcy12g013660 vs. TAIR 10
Match: AT1G77600.2 (ARM repeat superfamily protein )

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-57
Identity = 134/318 (42.14%), Postives = 189/318 (59.43%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           M+++  Q++ ++ ++L + SRP KD +VK LR+V +  + ++Q   P AT K +  K++E
Sbjct: 1   MEKTPTQIVSELCSRLLQLSRPNKDSLVKLLREVANTLSKIDQ---PSATNKEKGLKLIE 60

Query: 61  SSIKPLRKSII-NGLLRNRDKD----------------------------DVFILLLSSF 120
           + ++PL+KSII + LL+NRD D                            D+F L ++ F
Sbjct: 61  AELRPLKKSIIKHALLKNRDNDVSLLVTVCVSELFRILAPHLPFEDEYLRDIFTLFIAEF 120

Query: 121 SELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLV- 180
           SEL+D  SP FS+R KILETV+R K C++MLD  C DLV EMFN FFS +R++H+ SL+ 
Sbjct: 121 SELSDTVSPYFSKRAKILETVSRLKFCLLMLDEDCQDLVHEMFNMFFSLVREHHQQSLIN 180

Query: 181 ---------------------NNILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVAS 240
                                NNIL+IM+ +L E+A+   V V+L NL+KE +   + A 
Sbjct: 181 QKSMKTQQRKANTQQTQHSLFNNILAIMSDVLEEEANSSFVVVILENLVKEGEDTTSGAD 240

Query: 241 RLAVSIIETCAETLEPFICGFLT--------LGSELKEFYHEIIFRIFQCVPQMFLPVIP 260
           +LA S+IE CA+ LEP IC FLT        + + LK+ YHEIIF+I    PQM L VIP
Sbjct: 241 KLASSLIERCADRLEPLICSFLTSCFMEKDSIQTNLKDSYHEIIFKISLIAPQMLLAVIP 300

[Close]

BLAST of Lcy12g013660 vs. TAIR 10
Match: AT1G77600.3 (ARM repeat superfamily protein )

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-57
Identity = 134/318 (42.14%), Postives = 189/318 (59.43%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVPDATRKSESTKILE 60
           M+++  Q++ ++ ++L + SRP KD +VK LR+V +  + ++Q   P AT K +  K++E
Sbjct: 1   MEKTPTQIVSELCSRLLQLSRPNKDSLVKLLREVANTLSKIDQ---PSATNKEKGLKLIE 60

Query: 61  SSIKPLRKSII-NGLLRNRDKD----------------------------DVFILLLSSF 120
           + ++PL+KSII + LL+NRD D                            D+F L ++ F
Sbjct: 61  AELRPLKKSIIKHALLKNRDNDVSLLVTVCVSELFRILAPHLPFEDEYLRDIFTLFIAEF 120

Query: 121 SELADMTSPLFSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLV- 180
           SEL+D  SP FS+R KILETV+R K C++MLD  C DLV EMFN FFS +R++H+ SL+ 
Sbjct: 121 SELSDTVSPYFSKRAKILETVSRLKFCLLMLDEDCQDLVHEMFNMFFSLVREHHQQSLIN 180

Query: 181 ---------------------NNILSIMTHILSEDASLPLVDVVLHNLLKEEKVEPTVAS 240
                                NNIL+IM+ +L E+A+   V V+L NL+KE +   + A 
Sbjct: 181 QKSMKTQQRKANTQQTQHSLFNNILAIMSDVLEEEANSSFVVVILENLVKEGEDTTSGAD 240

Query: 241 RLAVSIIETCAETLEPFICGFLT--------LGSELKEFYHEIIFRIFQCVPQMFLPVIP 260
           +LA S+IE CA+ LEP IC FLT        + + LK+ YHEIIF+I    PQM L VIP
Sbjct: 241 KLASSLIERCADRLEPLICSFLTSCFMEKDSIQTNLKDSYHEIIFKISLIAPQMLLAVIP 300

[Close]

BLAST of Lcy12g013660 vs. TAIR 10
Match: AT5G47690.1 (binding )

HSP 1 Score: 122.1 bits (305), Expect = 6.6e-28
Identity = 93/287 (32.40%), Postives = 148/287 (51.57%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVP----------DAT 60
           M +   + + ++G+KL   +  +KD ++K L++     + LEQ   P          DA 
Sbjct: 1   MAQKPEEQLKELGSKL-DLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAV 60

Query: 61  RKSESTKILESSIKPLRKSIINGLLR---------NRDKDDVFILLLSSFSELADMTSPL 120
            K E     +  +K L  S ++ + R         +    D+F L++S+F+ L D++ P 
Sbjct: 61  IKPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPS 120

Query: 121 FSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNNILSIMTHIL 180
           F RRV ILETVA+ + CV+MLD+ C+DLV E+F TF    RD H   + +++ +IM  +L
Sbjct: 121 FGRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLL 180

Query: 181 --SEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLTLG----- 240
             SED    L+ ++L  L +        A RLA+ +IE CA  +E  I  FL        
Sbjct: 181 EESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQFLISSMSGDS 240

Query: 241 --SELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
             S  +  YHE+I+ +++C PQ    V P LT ELL D+++ R+  V
Sbjct: 241 RFSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVV 286

[Close]

BLAST of Lcy12g013660 vs. TAIR 10
Match: AT5G47690.2 (binding )

HSP 1 Score: 122.1 bits (305), Expect = 6.6e-28
Identity = 93/287 (32.40%), Postives = 148/287 (51.57%), Query Frame = 0


Query: 1   MDESSLQLIHDVGTKLCKQSRPTKDYIVKSLRQVVDAFACLEQPYVP----------DAT 60
           M +   + + ++G+KL   +  +KD ++K L++     + LEQ   P          DA 
Sbjct: 1   MAQKPEEQLKELGSKL-DLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAV 60

Query: 61  RKSESTKILESSIKPLRKSIINGLLR---------NRDKDDVFILLLSSFSELADMTSPL 120
            K E     +  +K L  S ++ + R         +    D+F L++S+F+ L D++ P 
Sbjct: 61  IKPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPS 120

Query: 121 FSRRVKILETVARCKCCVIMLDVGCNDLVLEMFNTFFSALRDYHEPSLVNNILSIMTHIL 180
           F RRV ILETVA+ + CV+MLD+ C+DLV E+F TF    RD H   + +++ +IM  +L
Sbjct: 121 FGRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLL 180

Query: 181 --SEDASLPLVDVVLHNLLKEEKVEPTVASRLAVSIIETCAETLEPFICGFLTLG----- 240
             SED    L+ ++L  L +        A RLA+ +IE CA  +E  I  FL        
Sbjct: 181 EESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQFLISSMSGDS 240

Query: 241 --SELKEFYHEIIFRIFQCVPQMFLPVIPNLTLELLTDQVDVRIIAV 260
             S  +  YHE+I+ +++C PQ    V P LT ELL D+++ R+  V
Sbjct: 241 RFSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVV 286

The following BLAST results are available for this feature:

BLAST of Lcy12g013660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6A026	4.2e-11	28.04	Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus OX=10090 GN=Pds...	[more]

BLAST of Lcy12g013660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9K0	1.6e-117	79.66	sister chromatid cohesion protein PDS5 homolog A-like isoform X1 OS=Cucurbita mo...	[more]
A0A6J1FAC4	1.6e-117	79.66	sister chromatid cohesion protein PDS5 homolog A-like isoform X4 OS=Cucurbita mo...	[more]
A0A6J1FF88	1.6e-117	79.66	sister chromatid cohesion protein PDS5 homolog A-like isoform X5 OS=Cucurbita mo...	[more]
A0A6J1FFR6	1.6e-117	79.66	sister chromatid cohesion protein PDS5 homolog A-like isoform X3 OS=Cucurbita mo...	[more]
A0A6J1FAD1	1.6e-117	79.66	sister chromatid cohesion protein PDS5 homolog A-like isoform X2 OS=Cucurbita mo...	[more]

BLAST of Lcy12g013660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536017.1	8.4e-118	80.00	sister chromatid cohesion protein PDS5 homolog A-like isoform X5 [Cucurbita pepo...	[more]
XP_023536012.1	8.4e-118	80.00	sister chromatid cohesion protein PDS5 homolog A-like isoform X2 [Cucurbita pepo...	[more]
XP_023536014.1	8.4e-118	80.00	sister chromatid cohesion protein PDS5 homolog A-like isoform X3 [Cucurbita pepo...	[more]
XP_023536015.1	8.4e-118	80.00	sister chromatid cohesion protein PDS5 homolog A-like isoform X4 [Cucurbita pepo...	[more]
XP_023536009.1	8.4e-118	80.00	sister chromatid cohesion protein PDS5 homolog A-like isoform X1 [Cucurbita pepo...	[more]

BLAST of Lcy12g013660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77600.1	1.4e-57	42.14	ARM repeat superfamily protein	[more]
AT1G77600.2	1.4e-57	42.14	ARM repeat superfamily protein	[more]
AT1G77600.3	1.4e-57	42.14	ARM repeat superfamily protein	[more]
AT5G47690.1	6.6e-28	32.40	binding	[more]
AT5G47690.2	6.6e-28	32.40	binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039776	Sister chromatid cohesion protein Pds5	PANTHER	PTHR12663	ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED	coord: 82..259
None	No IPR available	PANTHER	PTHR12663:SF0	PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A	coord: 82..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g013660.1	Lcy12g013660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007064	mitotic sister chromatid cohesion
cellular_component	GO:0005634	nucleus