Lcy12g012590 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g012590
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	60S ribosomal protein L18a-like protein
Location	Chr12: 40485962 .. 40489031 (-)
RNA-Seq Expression	Lcy12g012590
Synteny	Lcy12g012590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCAGGAAGAAAAGTCCGCCGCCGTGGGGGTCGTCGTTCACCACCACCACGAATCAAATTCCGGCCACCCTCACTATGGAACCTTCCAAGGCGTCGCCAATTATCCTCCCGTCGGATTCCCTCAGCCTACTCGCCCGCCTGGTGCTTCCGACTCCTATGATCCTTCTCAATCTGAGCCCTATGCTCATGGCTATCAAGCTGTCCCTGGTAACCTCTTCTTCCTCAAATTTCCTTAGTTGTTAATCTGGTGTTAGTTGTTTCTTTTCATTCTGGTGCGATTTCTTCAATCTTATGCTTTTCCGTTTGACTTGAACTACTGATCTTTGTTGCTCGGTCAAAGACCTTGAGTTGAACTCTAGTAAAGTTGATCTCATCTCTTGAATAGCTTAGTTCCGTCCGGAATCGAAGGATTATGATCTAGTGGACAGTTTTGTGCCAGGCATGGATGAGTGATCCCTAGTTTAGTTGTCAGATTTTTGTTCTCTGTATTTCAGTTCACATTCAACCTGGATCTTCATACTAGTACCCGATGTTTGAGATTAGATCCGCCTTTTTCTTGTATGTGAGTGTGCTTTATATCGGTGTCTGCTTCGGAGTGTGTAATTCAAAATTGCAAAATAAGTAGAGTAGGTAGCCACTTTTAATTCATGATAAACAAGGATCACAATAATGTATTATAGTTTATCAGTTGTTTAATTTGAAGCTTTTTGTTATAACAAAATCTCGACAAAAAAAGTTTGGCAGGATTCTTACTCAATAGACACGCGATTCTCTTTTAATTTTTGAAATACTTGAATTTAACATTCTGAAATTGGTATTTTGTTTAGTTTCATTGTATTGGCTGTAACTTCCTGTAACTTTTTCTAGAATATATACTCTTGGCTCTGCTTATCATAAAGACATAAGTAGTAGCTCAACTTTTTTTTTTTGTTAAATCAATCTTTTATTTTATTCCTGTATTCCTTTCCAGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCGGCGCCTTCCTTGCTGCGGTATTGGCTGTGGGTGGTTCCTGTAAGTTGTCATAGTTGTTGGACTTTATCAACATTTACGGAAAATTACACTAGCATTGTCATCATAAACAAGCCATGTGATATCATTATGTCCACAATAAGCATTTAAAATTTTCAGGAGTTACATGTTCAATGAGTTATCAATTCAGAAGAAGATTAGAATGCTACAACTTCCATGTTATGAACTAAAACCAGTCAGCTTCTAGATTGGAATGACAGAATTGCTAGCTGTGACCTGCCTACTCTCTATATCTTACTATTTAAAAATTTTGCCCAGATTTTTGTGTCTATATATGATTTACCAAATAGATTACTAACTATGTTCTTCAGGTTCATTATTGGTTTCTTCTTGGTTGGTATCCCATGGTATCTTGGGGCAATTCTTATACTATGTGGCAGGGTGGACTACCGTGAGAAACCCGGATATGTTGCTTGCTCAATTGCCGTGAGTAACTTTTATTCATTATTGTTATTTTTAACTTCTTCAGCTTCACGATCATGTTCTTATATCTTCAGTCTAGTTTTACAAATCGATTTCATCACAAGAAGTGCCTTTTCTGTTATTCTTTTTTGCAACTTACGAAAAGATATTTTGAGTTGGGTGGGAGACATTCAGGAGTAGGTGATTGTAATTTGTAAATAACTAAAACTTGTCATTCTTTTAGTTTTAGTATCTTGAGCTCCATTTTAACCGCGATTTTATTTTTAGCTTTCTGTTAAATTAAACTGGTTTATTTACAATTTATATGTTTTAGTTTTTAACTTTTTTCTTTAATTTTTTTTTTTGAAATCCCCCCCCCCCCCCCAAAAAAAAAAGAGGAAACTAAATCGTTATGAAATGAGCCATTGAAATTCATAAGTGGTGAATAAGTCTATCTACTTTTTTCCTTTTCTTCCTTAAAAATAGTTAATTTTTCTAACATTGAACACTAATAATATTACACTGTATATCAGGCTGTTCTTGCGACAGTTGCCATTCTTTTTGGTGCAACGAAGGAAGCTGATGTCTGGTAACCAATCGTAAACTAAAAATATTGTATATTTTGCAAATATGTATGAAAAACACAATCCATGATTTCTCAGCACCACATCTTCAAGCTAGTTCCATTTAAACCTAAATTTGTGTTCCGATGTTGTGCCTAAGAAGTGTAGCATTCTGCAAAATCATGTTATTTGTTTTTTCTATGATATGTTGAAATATGTGTTTTGACTAATTATCTGAACCTCCTCTGTCGGAATGTACTTATCCTTTGGTAAATATATTTCTTCTTTGTTTGGAATAAGCATTTGAATAGTATCAAAACAGATAACTGTTTCTCACCGATCAGATTGTTCCTCTAGCGAAATTGCTCAGCCTGATGGTCTTCTAAGGTAAAACTTTGTTACTCGGTCTGCATCATTTTTATATGAAATTTAGATCTTTCCCTTTATTTGAACTCTGAAGAGAGATAAAAATTGTGTGATTGTCCTCCCTCATTACACGGGGAGCACCTAAAATTTCTCCTTTTATTACCGACATTGGAGTCATTACTAAGTAAAATAACCTTTTTTTTAATTTTATTTTTAATTTTAGTTTATTATATTTATTTATTTTACTGAAATTCTCGTTCAGAACGCATTTCCAAAACGTGTGTGAACAATTTTCAGATGAAGAATTTAGAGGATTAATTTTTTGTATCATCCCCTTGAGTTGTCCCGAGTTTCCATTGATGAGAAGTGAGAACTTTGCCATCAAATGCGTTTTATTTCAGCTATGCCCCTTTGCCGTTAAAAAAAAGAGTTAGTCAGCCTAAATATTAGAGGTTAAATAGGTATAGAGATTTGAACCTCTAACTTTAAAGGAAGAAATACATACTAATTACCACCAAACTATGTTCATCTTAGATGTACCTATGACATTTTAATTCTTGTATCTTAAAAAAAAAAAGTCAGTTAGCCTAAATATTAGGGGTTAAATATGTTCTTTTTGGTTTTAATGTGGGTTTGGAGATTTGAACCTCCAACTTTAAAGGAAGGAATAC

mRNA sequence

ATGAGCCAGGAAGAAAAGTCCGCCGCCGTGGGGGTCGTCGTTCACCACCACCACGAATCAAATTCCGGCCACCCTCACTATGGAACCTTCCAAGGCGTCGCCAATTATCCTCCCGTCGGATTCCCTCAGCCTACTCGCCCGCCTGGTGCTTCCGACTCCTATGATCCTTCTCAATCTGAGCCCTATGCTCATGGCTATCAAGCTGTCCCTGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCGGCGCCTTCCTTGCTGCGGTATTGGCTGTGGGTGGTTCCTGTTCATTATTGGTTTCTTCTTGGTTGGTATCCCATGGTATCTTGGGGCAATTCTTATACTATGTGGCAGGGTGGACTACCGTGAGAAACCCGGATATGTTGCTTGCTCAATTGCCGCTGTTCTTGCGACAGTTGCCATTCTTTTTGGTGCAACGAAGGAAGCTGATGTCTGGTAACCAATCGTAAACTAAAAATATTGTATATTTTGCAAATATGTATGAAAAACACAATCCATGATTTCTCAGCACCACATCTTCAAGCTAGTTCCATTTAAACCTAAATTTGTGTTCCGATGTTGTGCCTAAGAAGTGTAGCATTCTGCAAAATCATGTTATTTGTTTTTTCTATGATATGTTGAAATATGTGTTTTGACTAATTATCTGAACCTCCTCTGTCGGAATGTACTTATCCTTTGGTAAATATATTTCTTCTTTGTTTGGAATAAGCATTTGAATAGTATCAAAACAGATAACTGTTTCTCACCGATCAGATTGTTCCTCTAGCGAAATTGCTCAGCCTGATGGTCTTCTAAGGTAAAACTTTGTTACTCGGTCTGCATCATTTTTATATGAAATTTAGATCTTTCCCTTTATTTGAACTCTGAAGAGAGATAAAAATTGTGTGATTGTCCTCCCTCATTACACGGGGAGCACCTAAAATTTCTCCTTTTATTACCGACATTGGAGTCATTACTAAGTAAAATAACCTTTTTTTTAATTTTATTTTTAATTTTAGTTTATTATATTTATTTATTTTACTGAAATTCTCGTTCAGAACGCATTTCCAAAACGTGTGTGAACAATTTTCAGATGAAGAATTTAGAGGATTAATTTTTTGTATCATCCCCTTGAGTTGTCCCGAGTTTCCATTGATGAGAAGTGAGAACTTTGCCATCAAATGCGTTTTATTTCAGCTATGCCCCTTTGCCGTTAAAAAAAAGAGTTAGTCAGCCTAAATATTAGAGGTTAAATAGGTATAGAGATTTGAACCTCTAACTTTAAAGGAAGAAATACATACTAATTACCACCAAACTATGTTCATCTTAGATGTACCTATGACATTTTAATTCTTGTATCTTAAAAAAAAAAAGTCAGTTAGCCTAAATATTAGGGGTTAAATATGTTCTTTTTGGTTTTAATGTGGGTTTGGAGATTTGAACCTCCAACTTTAAAGGAAGGAATAC

Coding sequence (CDS)

ATGAGCCAGGAAGAAAAGTCCGCCGCCGTGGGGGTCGTCGTTCACCACCACCACGAATCAAATTCCGGCCACCCTCACTATGGAACCTTCCAAGGCGTCGCCAATTATCCTCCCGTCGGATTCCCTCAGCCTACTCGCCCGCCTGGTGCTTCCGACTCCTATGATCCTTCTCAATCTGAGCCCTATGCTCATGGCTATCAAGCTGTCCCTGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCGGCGCCTTCCTTGCTGCGGTATTGGCTGTGGGTGGTTCCTGTTCATTATTGGTTTCTTCTTGGTTGGTATCCCATGGTATCTTGGGGCAATTCTTATACTATGTGGCAGGGTGGACTACCGTGAGAAACCCGGATATGTTGCTTGCTCAATTGCCGCTGTTCTTGCGACAGTTGCCATTCTTTTTGGTGCAACGAAGGAAGCTGATGTCTGGTAA

Protein sequence

MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

Homology

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BLAST of Lcy12g012590 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-30
Identity = 71/141 (50.35%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 26  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGY 85
           +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YA G+   VP Y
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPG--HAYQNLQGHGGGVNYAQGFPVVVPDY 79

Query: 86  AIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRVDYREKPGYVACS 145
            +VE RP+ E  LPCCG+G GWFLFI+GF   GIPWYLGA ++L   VD+REK GYVACS
Sbjct: 80  TVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACS 139

Query: 146 IAAVLATVAILFGATKEADVW 154
           IA+V+  +A++ G T + ++W
Sbjct: 140 IASVVYLIAVMLGMTGDINIW 158

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BLAST of Lcy12g012590 vs. ExPASy TrEMBL
Match: A0A6J1C1R6 (60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111007453 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 133/154 (86.36%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MSQEEK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQS 60
           MSQEEK +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPGASDSYDPSQS
Sbjct: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60

Query: 61  EPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGR 120
           +PYAH YQAVPGYAIVEGRPVRERRLPCCGIG GWFLFIIGFF+VGIPWY GAI+ILCGR
Sbjct: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120

Query: 121 VDYREKPGYVACSIAAVLATVAILFGATKEADVW 154
           VDYREKPGYVAC+IAA+L T+A++ G TK  DVW
Sbjct: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 154

[Close]

BLAST of Lcy12g012590 vs. ExPASy TrEMBL
Match: A0A5D3D9U1 (60S ribosomal protein L18a-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004080 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.1e-73
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSE 60
           MSQE+KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ +
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  PYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRV 120
            YAHGYQAVPGYAIVEGRPVRE  LPCCGIG GWFLFIIGFFL  IPWY GAILILCGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAVLATVAILFGATKEADVW 154
           DYREKPGYVACSIAAV+AT+AI+FGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Lcy12g012590 vs. ExPASy TrEMBL
Match: A0A1S3BUZ1 (60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103493475 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.1e-73
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSE 60
           MSQE+KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ +
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  PYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRV 120
            YAHGYQAVPGYAIVEGRPVRE  LPCCGIG GWFLFIIGFFL  IPWY GAILILCGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAVLATVAILFGATKEADVW 154
           DYREKPGYVACSIAAV+AT+AI+FGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Lcy12g012590 vs. ExPASy TrEMBL
Match: A0A0A0L1Y0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G621210 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.9e-71
Identity = 131/153 (85.62%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSE 60
           MS+++KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PG  DS DPSQ +
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  PYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRV 120
            YAHGYQAVPGYAIVEGRPVRE RLPCCGIG GWFLFIIGFFL  IPWY GAILI+CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 DYREKPGYVACSIAAVLATVAILFGATKEADVW 154
           DYREKPGYVACSIAAV+ATVAI+FGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

[Close]

BLAST of Lcy12g012590 vs. ExPASy TrEMBL
Match: A0A6J1F8P0 (60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443327 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.9e-67
Identity = 129/153 (84.31%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSE 60
           MSQE+KSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPG SD  D SQ E
Sbjct: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPE 60

Query: 61  PYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRV 120
            YAHGYQ V GYA+VEGRPVRE RLPCCGIG GWFLFIIGF L    WY+GAILILCGRV
Sbjct: 61  HYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAVLATVAILFGATKEADVW 154
            YREKPGYVACSIAAV+ATVAI+FGATK ADVW
Sbjct: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 152

[Close]

BLAST of Lcy12g012590 vs. NCBI nr
Match: XP_038896754.1 (60S ribosomal protein L18a-like protein [Benincasa hispida])

HSP 1 Score: 287.0 bits (733), Expect = 9.8e-74
Identity = 137/153 (89.54%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSE 60
           MSQE+KSAAVGVVVHHHHESNSGHP YGTFQGVANYPPVGFPQPTRPPG SDS DPSQ +
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSGHPLYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQ 60

Query: 61  PYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRV 120
            YAHGYQAVPGY IVEGRPVRERRLPCCGIG GWFLFIIGFFL  IPWY GAILILCGRV
Sbjct: 61  DYAHGYQAVPGYGIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAVLATVAILFGATKEADVW 154
           DYREKPGYVAC IAAVLATVAI+FGAT+EAD W
Sbjct: 121 DYREKPGYVACLIAAVLATVAIIFGATREADDW 153

[Close]

BLAST of Lcy12g012590 vs. NCBI nr
Match: XP_022135554.1 (60S ribosomal protein L18a-like protein [Momordica charantia])

HSP 1 Score: 284.6 bits (727), Expect = 4.9e-73
Identity = 133/154 (86.36%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MSQEEK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQS 60
           MSQEEK +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPGASDSYDPSQS
Sbjct: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60

Query: 61  EPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGR 120
           +PYAH YQAVPGYAIVEGRPVRERRLPCCGIG GWFLFIIGFF+VGIPWY GAI+ILCGR
Sbjct: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120

Query: 121 VDYREKPGYVACSIAAVLATVAILFGATKEADVW 154
           VDYREKPGYVAC+IAA+L T+A++ G TK  DVW
Sbjct: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 154

[Close]

BLAST of Lcy12g012590 vs. NCBI nr
Match: XP_008452440.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo] >KAA0064318.1 60S ribosomal protein L18a-like protein [Cucumis melo var. makuwa] >TYK20268.1 60S ribosomal protein L18a-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 6.4e-73
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSE 60
           MSQE+KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ +
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  PYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRV 120
            YAHGYQAVPGYAIVEGRPVRE  LPCCGIG GWFLFIIGFFL  IPWY GAILILCGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAVLATVAILFGATKEADVW 154
           DYREKPGYVACSIAAV+AT+AI+FGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Lcy12g012590 vs. NCBI nr
Match: XP_004146004.1 (60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN55009.1 hypothetical protein Csa_012352 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-70
Identity = 131/153 (85.62%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSE 60
           MS+++KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PG  DS DPSQ +
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  PYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRV 120
            YAHGYQAVPGYAIVEGRPVRE RLPCCGIG GWFLFIIGFFL  IPWY GAILI+CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 DYREKPGYVACSIAAVLATVAILFGATKEADVW 154
           DYREKPGYVACSIAAV+ATVAI+FGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

[Close]

BLAST of Lcy12g012590 vs. NCBI nr
Match: XP_022936871.1 (60S ribosomal protein L18a-like protein [Cucurbita moschata] >KAG6591784.1 60S ribosomal protein L18a-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024662.1 60S ribosomal protein L18a-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.0 bits (676), Expect = 4.0e-67
Identity = 129/153 (84.31%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSE 60
           MSQE+KSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPG SD  D SQ E
Sbjct: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPE 60

Query: 61  PYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRV 120
            YAHGYQ V GYA+VEGRPVRE RLPCCGIG GWFLFIIGF L    WY+GAILILCGRV
Sbjct: 61  HYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAVLATVAILFGATKEADVW 154
            YREKPGYVACSIAAV+ATVAI+FGATK ADVW
Sbjct: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 152

[Close]

BLAST of Lcy12g012590 vs. TAIR 10
Match: AT1G17080.1 (Ribosomal protein L18ae family )

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-44
Identity = 86/144 (59.72%), Postives = 105/144 (72.92%), Query Frame = 0


Query: 19  ESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPG 78
           E  + H  YGTFQGV+NYPP        GFPQP+ PPG  DS  P     YAHGYQ VP 
Sbjct: 15  EEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYDSGAPY----YAHGYQTVPV 74

Query: 79  Y-AIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCG-RVDYREKPGYV 138
           +  + EGRPVR+RRLPCCGIG GWFLFI+GFFL  IPWY+G  +++ G R+DYREKPGY+
Sbjct: 75  HGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGRRIDYREKPGYI 134

Query: 139 ACSIAAVLATVAILFGATKEADVW 154
           AC+IAA+LAT+A++ G +K AD W
Sbjct: 135 ACTIAAILATIAVILGVSKGADDW 154

[Close]

BLAST of Lcy12g012590 vs. TAIR 10
Match: AT1G53560.1 (Ribosomal protein L18ae family )

HSP 1 Score: 151.4 bits (381), Expect = 6.0e-37
Identity = 74/139 (53.24%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 27  YGTFQGVANYPP------------VGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAI 86
           YGTFQGV  YPP            +G PQP+ PPG S  +D S  + Y   +Q V GY +
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHPVIGIPQPSPPPG-SPHHDISVHQ-YIQEHQTVAGYPV 75

Query: 87  VEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRVDYREKPGYVACSIA 146
            +GRP R+ RLPCCG+G GWFLFIIGF L  IPWY+G  +++C R+D REKPGYVAC+IA
Sbjct: 76  SQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIA 135

Query: 147 AVLATVAILFGATKEADVW 154
           AV+AT+ I+FG      VW
Sbjct: 136 AVVATITIVFGVMGGRGVW 152

[Close]

BLAST of Lcy12g012590 vs. TAIR 10
Match: AT1G29970.1 (60S ribosomal protein L18A-1 )

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-31
Identity = 71/141 (50.35%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 26  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGY 85
           +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YA G+   VP Y
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPG--HAYQNLQGHGGGVNYAQGFPVVVPDY 79

Query: 86  AIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRVDYREKPGYVACS 145
            +VE RP+ E  LPCCG+G GWFLFI+GF   GIPWYLGA ++L   VD+REK GYVACS
Sbjct: 80  TVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACS 139

Query: 146 IAAVLATVAILFGATKEADVW 154
           IA+V+  +A++ G T + ++W
Sbjct: 140 IASVVYLIAVMLGMTGDINIW 158

[Close]

BLAST of Lcy12g012590 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 118.2 bits (295), Expect = 5.6e-27
Identity = 66/122 (54.10%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 26  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGY 85
           +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YA G+   VP Y
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPG--HAYQNLQGHGGGVNYAQGFPVVVPDY 79

Query: 86  AIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAILILCGRVDYREKPGYVACS 135
            +VE RP+ E  LPCCG+G GWFLFI+GF   GIPWYLGA ++L   VD+REK GYVACS
Sbjct: 80  TVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACS 139

[Close]

BLAST of Lcy12g012590 vs. TAIR 10
Match: AT1G29970.3 (60S ribosomal protein L18A-1 )

HSP 1 Score: 112.1 bits (279), Expect = 4.0e-25
Identity = 71/183 (38.80%), Postives = 90/183 (49.18%), Query Frame = 0


Query: 26  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGY 85
           +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YA G+   VP Y
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPG--HAYQNLQGHGGGVNYAQGFPVVVPDY 79

Query: 86  AIVEGRPVRERRLPCCGIGCGWFL------------------------------------ 145
            +VE RP+ E  LPCCG+G GWFL                                    
Sbjct: 80  TVVEVRPMIEHELPCCGLGMGWFLSKLQKLRFMVVGNSSLLSWNLFVSSEILDELIASWN 139

Query: 146 ------FIIGFFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEA 154
                 FI+GF   GIPWYLGA ++L   VD+REK GYVACSIA+V+  +A++ G T + 
Sbjct: 140 QYKKSVFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGMTGDI 199

The following BLAST results are available for this feature:

BLAST of Lcy12g012590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S1	4.1e-30	50.35	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of Lcy12g012590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1R6	2.4e-73	86.36	60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5D3D9U1	3.1e-73	88.24	60S ribosomal protein L18a-like protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BUZ1	3.1e-73	88.24	60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103493475 ...	[more]
A0A0A0L1Y0	4.9e-71	85.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G621210 PE=4 SV=1	[more]
A0A6J1F8P0	1.9e-67	84.31	60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Lcy12g012590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896754.1	9.8e-74	89.54	60S ribosomal protein L18a-like protein [Benincasa hispida]	[more]
XP_022135554.1	4.9e-73	86.36	60S ribosomal protein L18a-like protein [Momordica charantia]	[more]
XP_008452440.1	6.4e-73	88.24	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo] >KAA0064318.1 ...	[more]
XP_004146004.1	1.0e-70	85.62	60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN55009.1 hypothetic...	[more]
XP_022936871.1	4.0e-67	84.31	60S ribosomal protein L18a-like protein [Cucurbita moschata] >KAG6591784.1 60S r...	[more]

BLAST of Lcy12g012590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17080.1	1.3e-44	59.72	Ribosomal protein L18ae family	[more]
AT1G53560.1	6.0e-37	53.24	Ribosomal protein L18ae family	[more]
AT1G29970.1	2.9e-31	50.35	60S ribosomal protein L18A-1	[more]
AT1G29970.2	5.6e-27	54.10	60S ribosomal protein L18A-1	[more]
AT1G29970.3	4.0e-25	38.80	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044804	AT1G29970-like	PANTHER	PTHR46631	60S RIBOSOMAL PROTEIN L18A-LIKE	coord: 1..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g012590.1	Lcy12g012590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome