Lcy12g012410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g012410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribosomal RNA small subunit methyltransferase G, putative
Location	Chr12: 40295704 .. 40297138 (-)
RNA-Seq Expression	Lcy12g012410
Synteny	Lcy12g012410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATAACTTTTAAGTTCGGTAACTTAGTACAAAGAGTTCAAAAAACTATTCAACACTCTTTACCGTCAATGGATCTACTAAATACGCTAACACACACAACTTTACTAATGATCAAAAGGTTGGTAGTTCGAAACACTACCCACATGGTAAAAAAAAAAAAGAAAAAAAAATCTAAACCCAACTCCAAATATGGAGGAAACCTATATAAACGACCGCAATTTAATATGGATAAAAATAATTAAAAATAAAAAATAAAAAACGACCGGAATTAAATTCTAGACCAAAAATTTAATATAAGCTTCAAATATACATTTATATAACTGAACTAACCATCGAAGCTCCCATGTCCGGCAATGGAAGCTCTGTGGAATTTGGAAGACAAATGGAAGCTCTCGACCCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGCCGCCGTCGTCGGACTCTGCGCGGCGGCGTGGGCGAAGAAGAGGAAAGGCGAGCGCCGACGGGCGGCGGAGCGGTGGAAGTGGGTGGCGAATAGACGGAAGGGGAGCGGCGGCGGAGAGACGCCGATGCGGCTGTTGGGCGGAGAAGGGGAAGGGGAAGAATTAGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAAAGGCCGATATTGATGGGGGAAAAATGTGAGATGCTGAAATACAGTGGGCTTATTTTATATGACGAAAGGGGAAGATTGCTGCAGGATCAAATCGCCGCCATGGAAAATGGTCACAACTGCTTCGTAAGTTGCTTCGGATTTTTTATTCATTTTAAATCATAATTTCAGGATCAAATTGCGGTCTAGTACTTCATGGTACGTACTTTCAAATGTTTTTGTATTTTTGAAAAAGGAATTAGTTCTGATCCATTAATGGAGGACCCTGTTTTCTGGCAATGCAAGTAATCTACCTCATAATCTTATCCAAATAATAGTAATTATAATAGAAAAGACTAGTTAAGAACTTAAGATATATATTATCTTTCATCAAGATGTTAGAAATTCAAATCCGAGGAAAGCATTGAATCAGTTTTATCTTATGAAAAAAAAAATATATATCAATTCAAAGGAATCTTATTATTTTTGGAAAACATTGAAATATTTAAAGAGATTAAAAAAAAACATTAATCTTTAATTGAAGTATAAAGTTAGTGTTTGTTTTTGTGTTGTATTTTTGCCCTTAACACCACATGTTTGATTAATAACATGTAGGAAGGAGAAGCAATAAAAGTAAAGACAAGGTTGAAGGATCTACTCTGATGTTTTCTTCTTCCATGGGAATCTTCATTTTAAAAAAAAAAATATACAAAGGGATGACCTTTTCCAATGTAATATTCCTCTCTTCTTTTGGAATAGATTGTCCAAATAACCTCTCTTTCTTTCTTCTTCACACATTCATTTCTCTTGGTTTCAATAATTTTTTTTT

mRNA sequence

CTCATAACTTTTAAGTTCGGTAACTTAGTACAAAGAGTTCAAAAAACTATTCAACACTCTTTACCGTCAATGGATCTACTAAATACGCTAACACACACAACTTTACTAATGATCAAAAGGTTGGTAGTTCGAAACACTACCCACATGGTAAAAAAAAAAAAGAAAAAAAAATCTAAACCCAACTCCAAATATGGAGGAAACCTATATAAACGACCGCAATTTAATATGGATAAAAATAATTAAAAATAAAAAATAAAAAACGACCGGAATTAAATTCTAGACCAAAAATTTAATATAAGCTTCAAATATACATTTATATAACTGAACTAACCATCGAAGCTCCCATGTCCGGCAATGGAAGCTCTGTGGAATTTGGAAGACAAATGGAAGCTCTCGACCCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGCCGCCGTCGTCGGACTCTGCGCGGCGGCGTGGGCGAAGAAGAGGAAAGGCGAGCGCCGACGGGCGGCGGAGCGGTGGAAGTGGGTGGCGAATAGACGGAAGGGGAGCGGCGGCGGAGAGACGCCGATGCGGCTGTTGGGCGGAGAAGGGGAAGGGGAAGAATTAGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAAAGGCCGATATTGATGGGGGAAAAATGTGAGATGCTGAAATACAGTGGGCTTATTTTATATGACGAAAGGGGAAGATTGCTGCAGGATCAAATCGCCGCCATGGAAAATGGTCACAACTGCTTCGAAGGAGAAGCAATAAAAGTAAAGACAAGGTTGAAGGATCTACTCTGATGTTTTCTTCTTCCATGGGAATCTTCATTTTAAAAAAAAAAATATACAAAGGGATGACCTTTTCCAATGTAATATTCCTCTCTTCTTTTGGAATAGATTGTCCAAATAACCTCTCTTTCTTTCTTCTTCACACATTCATTTCTCTTGGTTTCAATAATTTTTTTTT

Coding sequence (CDS)

ATGGAAGCTCTGTGGAATTTGGAAGACAAATGGAAGCTCTCGACCCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGCCGCCGTCGTCGGACTCTGCGCGGCGGCGTGGGCGAAGAAGAGGAAAGGCGAGCGCCGACGGGCGGCGGAGCGGTGGAAGTGGGTGGCGAATAGACGGAAGGGGAGCGGCGGCGGAGAGACGCCGATGCGGCTGTTGGGCGGAGAAGGGGAAGGGGAAGAATTAGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAAAGGCCGATATTGATGGGGGAAAAATGTGAGATGCTGAAATACAGTGGGCTTATTTTATATGACGAAAGGGGAAGATTGCTGCAGGATCAAATCGCCGCCATGGAAAATGGTCACAACTGCTTCGAAGGAGAAGCAATAAAAGTAAAGACAAGGTTGAAGGATCTACTCTGA

Protein sequence

MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGERRRAAERWKWVANRRKGSGGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGHNCFEGEAIKVKTRLKDLL

Homology

[Close]

BLAST of Lcy12g012410 vs. ExPASy TrEMBL
Match: A0A0A0L376 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622860 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 130/155 (83.87%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGER----RRAAER-WKWV 60
           MEALWNLEDKWKLSTQQAF+LLTCT AAV+GLCAAAWAKKRKGE+    RR  +R WKW 
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEKKAHPRRTDQRWWKWP 60

Query: 61  A--NRRKGSGGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           A  +RRKGSGGGETP+RLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  ATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGHNCFEGEAIKVKTRLKDLL 149
           ERGRLLQ+QIAAMENG+   EGE IKVKTRLKDLL
Sbjct: 121 ERGRLLQEQIAAMENGYK--EGEVIKVKTRLKDLL 153

[Close]

BLAST of Lcy12g012410 vs. ExPASy TrEMBL
Match: A0A5D3DW00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00300 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.2e-59
Identity = 129/155 (83.23%), Postives = 135/155 (87.10%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGE----RRRAAER-WKWV 60
           MEALWNLEDKWKLSTQQAF+LLTCT AAV+ LCAAAWA+KRKGE    RRR  +R WKW 
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTLAAVIALCAAAWARKRKGEKKAHRRRTDQRWWKWA 60

Query: 61  AN-RRKGS-GGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           A  R KGS GGGETP+RLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  AEIRWKGSGGGGETPVRLLGEEEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGHNCFEGEAIKVKTRLKDLL 149
           ERGRLLQDQIAAMENG+   EGE IKVKTRLKDLL
Sbjct: 121 ERGRLLQDQIAAMENGYK--EGEGIKVKTRLKDLL 153

[Close]

BLAST of Lcy12g012410 vs. ExPASy TrEMBL
Match: A0A1S3CQQ9 (uncharacterized protein LOC103503252 OS=Cucumis melo OX=3656 GN=LOC103503252 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.2e-59
Identity = 129/155 (83.23%), Postives = 135/155 (87.10%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGE----RRRAAER-WKWV 60
           MEALWNLEDKWKLSTQQAF+LLTCT AAV+ LCAAAWA+KRKGE    RRR  +R WKW 
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTLAAVIALCAAAWARKRKGEKKAHRRRTDQRWWKWA 60

Query: 61  AN-RRKGS-GGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           A  R KGS GGGETP+RLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  AEIRWKGSGGGGETPVRLLGEEEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGHNCFEGEAIKVKTRLKDLL 149
           ERGRLLQDQIAAMENG+   EGE IKVKTRLKDLL
Sbjct: 121 ERGRLLQDQIAAMENGYK--EGEGIKVKTRLKDLL 153

[Close]

BLAST of Lcy12g012410 vs. ExPASy TrEMBL
Match: A0A6J1IGV7 (uncharacterized protein LOC111477103 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477103 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.7e-56
Identity = 120/155 (77.42%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGER-----RRAAERWKW- 60
           MEALWNLEDKWKLSTQQAFILLTCTA AV+G CAA WAK+RK E+      +A ERW W 
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWK 60

Query: 61  -VANRRKGSGGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
             A+RRK SGGGETP+RLLG  GEGE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  GAADRRKVSGGGETPVRLLG--GEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGHNCFEGEAIKVKTRLKDLL 149
           ERGRLLQDQIAAMENG+   +G+ + VKTRLKDLL
Sbjct: 121 ERGRLLQDQIAAMENGYK--DGDGVIVKTRLKDLL 151

[Close]

BLAST of Lcy12g012410 vs. ExPASy TrEMBL
Match: A0A6J1II18 (uncharacterized protein LOC111477103 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477103 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.5e-51
Identity = 110/137 (80.29%), Postives = 118/137 (86.13%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGER-----RRAAERWKW- 60
           MEALWNLEDKWKLSTQQAFILLTCTA AV+G CAA WAK+RK E+      +A ERW W 
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWK 60

Query: 61  -VANRRKGSGGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
             A+RRK SGGGETP+RLLG  GEGE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  GAADRRKVSGGGETPVRLLG--GEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGH 131
           ERGRLLQDQIAAMENG+
Sbjct: 121 ERGRLLQDQIAAMENGY 135

[Close]

BLAST of Lcy12g012410 vs. NCBI nr
Match: XP_038899822.1 (uncharacterized protein LOC120087050 isoform X2 [Benincasa hispida])

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 128/153 (83.66%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGERR-----RAAERWKWV 60
           MEALWNLEDKWKLSTQQAFILLTCTA AVVG+C AAWAKKR+GE++          WKW 
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVVGICTAAWAKKRRGEKKDHRRGTTVRWWKWA 60

Query: 61  ANRRKGSGGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDER 120
           A RRKGSGGGETP+RLL GEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDER
Sbjct: 61  AERRKGSGGGETPVRLLSGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDER 120

Query: 121 GRLLQDQIAAMENGHNCFEGEAIKVKTRLKDLL 149
           GRLLQDQIAAMENG+   EGEAI VKTRLKDLL
Sbjct: 121 GRLLQDQIAAMENGYK--EGEAIIVKTRLKDLL 151

[Close]

BLAST of Lcy12g012410 vs. NCBI nr
Match: KGN55027.1 (hypothetical protein Csa_012520 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 2.4e-61
Identity = 130/155 (83.87%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGER----RRAAER-WKWV 60
           MEALWNLEDKWKLSTQQAF+LLTCT AAV+GLCAAAWAKKRKGE+    RR  +R WKW 
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEKKAHPRRTDQRWWKWP 60

Query: 61  A--NRRKGSGGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           A  +RRKGSGGGETP+RLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  ATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGHNCFEGEAIKVKTRLKDLL 149
           ERGRLLQ+QIAAMENG+   EGE IKVKTRLKDLL
Sbjct: 121 ERGRLLQEQIAAMENGYK--EGEVIKVKTRLKDLL 153

[Close]

BLAST of Lcy12g012410 vs. NCBI nr
Match: XP_008465611.1 (PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo] >KAA0066703.1 uncharacterized protein E6C27_scaffold271G00360 [Cucumis melo var. makuwa] >TYK27853.1 uncharacterized protein E5676_scaffold384G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 6.6e-59
Identity = 129/155 (83.23%), Postives = 135/155 (87.10%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGE----RRRAAER-WKWV 60
           MEALWNLEDKWKLSTQQAF+LLTCT AAV+ LCAAAWA+KRKGE    RRR  +R WKW 
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTLAAVIALCAAAWARKRKGEKKAHRRRTDQRWWKWA 60

Query: 61  AN-RRKGS-GGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           A  R KGS GGGETP+RLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  AEIRWKGSGGGGETPVRLLGEEEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGHNCFEGEAIKVKTRLKDLL 149
           ERGRLLQDQIAAMENG+   EGE IKVKTRLKDLL
Sbjct: 121 ERGRLLQDQIAAMENGYK--EGEGIKVKTRLKDLL 153

[Close]

BLAST of Lcy12g012410 vs. NCBI nr
Match: XP_023534959.1 (uncharacterized protein LOC111796532 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 5.6e-58
Identity = 123/155 (79.35%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGER-----RRAAERWKW- 60
           MEALWNLEDKWKLSTQQAFILLTCTA AV+G CAAAWAK+RK E+      +A ERW W 
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60

Query: 61  -VANRRKGSGGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
             A+ RK SGGGETP+RLLGGEGEGE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGHNCFEGEAIKVKTRLKDLL 149
           ERGRLLQDQIAAMENG+   +G+ I VKTRLKDLL
Sbjct: 121 ERGRLLQDQIAAMENGYK--DGDGIIVKTRLKDLL 153

[Close]

BLAST of Lcy12g012410 vs. NCBI nr
Match: XP_038899821.1 (uncharacterized protein LOC120087050 isoform X1 [Benincasa hispida])

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 114/135 (84.44%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGERR-----RAAERWKWV 60
           MEALWNLEDKWKLSTQQAFILLTCTA AVVG+C AAWAKKR+GE++          WKW 
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVVGICTAAWAKKRRGEKKDHRRGTTVRWWKWA 60

Query: 61  ANRRKGSGGGETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDER 120
           A RRKGSGGGETP+RLL GEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDER
Sbjct: 61  AERRKGSGGGETPVRLLSGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDER 120

Query: 121 GRLLQDQIAAMENGH 131
           GRLLQDQIAAMENG+
Sbjct: 121 GRLLQDQIAAMENGY 135

[Close]

BLAST of Lcy12g012410 vs. TAIR 10
Match: AT3G14760.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-14
Identity = 61/180 (33.89%), Postives = 87/180 (48.33%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAVVGLCAAAWAKKRKGERRRAAERWKWVANRRK 60
           MEALW LE+K KL+T++A ++L  TAAAV  LC AA    R    ++ A+  +W +    
Sbjct: 1   MEALWKLEEKLKLTTKEAVVILVGTAAAVTLLCIAAAFLNRNSRGKQVADA-EWASETAF 60

Query: 61  GSGGGETPMRLLGGEGEGEELG---------------------------SRNSTAAVWQR 120
           GS   E   +    + +   +G                           S N+   VWQR
Sbjct: 61  GSRTMEEKRKCKWSKVKRTLMGSFCWSSAAKWMEMETRRQPPLLAVKERSLNAVDPVWQR 120

Query: 121 PILMGEKCEMLKYSGLILYDERGR-----LLQDQIAAMENGHNCFEGEAIKVKTRLKDLL 149
           PILMGEKCE+ ++SGLILYDE G       LQ+++            ++  V+T L+DLL
Sbjct: 121 PILMGEKCELPRFSGLILYDECGHPRHHPQLQEKVK-----------QSSVVRTTLRDLL 168

[Close]

BLAST of Lcy12g012410 vs. TAIR 10
Match: AT1G49000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-06
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 90  VWQRPILMGEKCEMLKYSGLILYDERGRLLQD 122
           +WQR ILMG KCE L +SG+I YD  GRLL +
Sbjct: 107 LWQREILMGGKCEPLDFSGVIYYDSNGRLLNE 138

[Close]

BLAST of Lcy12g012410 vs. TAIR 10
Match: AT3G18560.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49000.1); Has 95 Blast hits to 95 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.9e-04
Identity = 30/69 (43.48%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 55  VANRRKGSGGG---ETPMRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 114
           V  + K   GG   +T + ++  E E EE G       VWQR ILMG KCE L YSG+I 
Sbjct: 103 VGRKNKAYDGGPTKKTAVEMVMEEDE-EEYG-------VWQREILMGGKCEPLDYSGVIY 162

Query: 115 YDERGRLLQ 121
           YD  G  L+
Sbjct: 163 YDCSGHQLK 163

The following BLAST results are available for this feature:

BLAST of Lcy12g012410 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g012410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L376	1.2e-61	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622860 PE=4 SV=1	[more]
A0A5D3DW00	3.2e-59	83.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CQQ9	3.2e-59	83.23	uncharacterized protein LOC103503252 OS=Cucumis melo OX=3656 GN=LOC103503252 PE=...	[more]
A0A6J1IGV7	9.7e-56	77.42	uncharacterized protein LOC111477103 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1II18	5.5e-51	80.29	uncharacterized protein LOC111477103 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lcy12g012410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899822.1	1.3e-62	83.66	uncharacterized protein LOC120087050 isoform X2 [Benincasa hispida]	[more]
KGN55027.1	2.4e-61	83.87	hypothetical protein Csa_012520 [Cucumis sativus]	[more]
XP_008465611.1	6.6e-59	83.23	PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo] >KAA0066703.1 unc...	[more]
XP_023534959.1	5.6e-58	79.35	uncharacterized protein LOC111796532 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_038899821.1	1.4e-56	84.44	uncharacterized protein LOC120087050 isoform X1 [Benincasa hispida]	[more]

BLAST of Lcy12g012410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14760.1	1.1e-14	33.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G49000.1	6.9e-06	62.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18560.1	2.9e-04	43.48	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..80
None	No IPR available	PANTHER	PTHR33237	F2P16.13 PROTEIN-RELATED	coord: 1..51
None	No IPR available	PANTHER	PTHR33237	F2P16.13 PROTEIN-RELATED	coord: 52..148
None	No IPR available	PANTHER	PTHR33237:SF21	TRANSMEMBRANE PROTEIN	coord: 52..148
None	No IPR available	PANTHER	PTHR33237:SF21	TRANSMEMBRANE PROTEIN	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g012410.1	Lcy12g012410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane