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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTTAGAGCATATAGGACAAATAATATCAATATTAATACCTCTATTTTTAAGATTGATTTTTGTTGGTGCGAGAGGAAGAAATACGGCGGCATCGGATGGATACTCCGGCGAAGTGATGGAACCCCTGTTATAGCCGGCTTCAAGGTCATCAGGCGGCAATGGAGAGTACCTTGGTTGGAAGCCCTAGCGTTAGTTGATGGGCTGAAATCAATACCTCAAATTTATTCCAAATTGATTACCGAGCTTGACTCAGTGCAGGTGGTAAATCAGCTAGAAGGAAAGGAGGAAGATATTTAA mRNA sequence ATGGTTAGAGCATATAGGACAAATAATATCAATATTAATACCTCTATTTTTAAGATTGATTTTTGTTGGTGCGAGAGGAAGAAATACGGCGGCATCGGATGGATACTCCGGCGAAGTGATGGAACCCCTGTTATAGCCGGCTTCAAGGTCATCAGGCGGCAATGGAGAGTACCTTGGTTGGAAGCCCTAGCGTTAGTTGATGGGCTGAAATCAATACCTCAAATTTATTCCAAATTGATTACCGAGCTTGACTCAGTGCAGGTGGTAAATCAGCTAGAAGGAAAGGAGGAAGATATTTAA Coding sequence (CDS) ATGGTTAGAGCATATAGGACAAATAATATCAATATTAATACCTCTATTTTTAAGATTGATTTTTGTTGGTGCGAGAGGAAGAAATACGGCGGCATCGGATGGATACTCCGGCGAAGTGATGGAACCCCTGTTATAGCCGGCTTCAAGGTCATCAGGCGGCAATGGAGAGTACCTTGGTTGGAAGCCCTAGCGTTAGTTGATGGGCTGAAATCAATACCTCAAATTTATTCCAAATTGATTACCGAGCTTGACTCAGTGCAGGTGGTAAATCAGCTAGAAGGAAAGGAGGAAGATATTTAA Protein sequence MVRAYRTNNININTSIFKIDFCWCERKKYGGIGWILRRSDGTPVIAGFKVIRRQWRVPWLEALALVDGLKSIPQIYSKLITELDSVQVVNQLEGKEEDI
Homology
BLAST of Lcy12g011700 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04 Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 0
Query: 20 DFCWCERKKYGGIGWILRRSDGTPVIAGFKVIRRQWRVPWLEALALVDGLKSIPQ--IYS 79
D W + GGIGWI+R DG V+AG + + V LEA A+++GL+++ +
Sbjct: 84 DASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLR 143
Query: 80 KLITELDSVQVVNQLEGKEEDI 100
L E DS +V + L K ED+
Sbjct: 144 PLHIETDSAEVESLLNRKREDL 165
BLAST of Lcy12g011700 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia]) HSP 1 Score: 54.7 bits (130), Expect = 5.3e-04 Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 0
Query: 20 DFCWCERKKYGGIGWILRRSDGTPVIAGFKVIRRQWRVPWLEALALVDGLKSIPQ--IYS 79
D W + GGIGWI+R DG V+AG + + V LEA A+++GL+++ +
Sbjct: 84 DASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLR 143
Query: 80 KLITELDSVQVVNQLEGKEEDI 100
L E DS +V + L K ED+
Sbjct: 144 PLHIETDSAEVESLLNRKREDL 165
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DNV9 | 2.6e-04 | 36.59 | uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022155262.1 | 5.3e-04 | 36.59 | uncharacterized protein LOC111022403 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002156 | Ribonuclease H domain | PFAM | PF13456 | RVT_3 | coord: 22..97
e-value: 7.0E-9
score: 35.6 |
| IPR036397 | Ribonuclease H superfamily | GENE3D | 3.30.420.10 | | coord: 17..98
e-value: 3.4E-5
score: 25.9 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
|
