Lcy12g011560 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g011560
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 39082003 .. 39082833 (+)
RNA-Seq Expression	Lcy12g011560
Synteny	Lcy12g011560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACTCCAACGGATCCGTTGCTTTGTGCAATATCTCAAAAGCTCTGTTTAAACACCGCCACGGCGGTGCTACTTCGGCTCCCTTCTCCGCCACCACCGCCACCGCCACCGCCCTTAACCGACTCCGGGTACGCCGCCCTAACCTTCCGACCAAAATTTCACTTCCTAATTAACACTTTTCTTTTACGCTAAATATTTTTTGATATCTAATGCATGGTCGTTTTTTGTATTTTATTTAATGTCTATTGTTTGAAAATTCTGTAACACTTTTCTTTGGGTTGTCTACCAAATTTAACATTTACAAAAAGAAAAAAATCTTAAAAACCAAGAGTAAAAACTCTTAAACAATGAGAGTTCAATTGGAAAAAGTAGTTTAATTTTACAAACTATTAGGGTGTTTCAGTTGTCGAGATTTTAATGGGGTGGTAAATATTGTTCTATTGTTTTATTAGCCTCTCAAATAGTGTTTTTGTATTTGAGGTTGATCCCGCGGGGGAGAGCGGCGAGGCGGAGACGATGGAAGAAGCGGCGGCGGAAAGTAGGGAGGAAGTGGCTTACGATGCAACGAAAGGGAGAGTGGAGAAGGTGAAGGAGACAGTGATTGCAGAGGCAAATGAGAATGTGGTGGATACTACAGAGTACAGAAGCATGGAGGATATGGGCACTATCAAAACATGCTCATTTTGATTTTTTTCTTAAGCTTTTCTTTTTCTTAGTTTTCTTATTATGTATTTGAATGTTTCGGTATTAGTATCAGTATCTGTGTTTAAAGTGTTTTGAATTTATATTATATTCAACGGTATTAGTATTAATCATGTTAGGATGGG

mRNA sequence

ATGGCTTACTCCAACGGATCCGTTGCTTTGTGCAATATCTCAAAAGCTCTGTTTAAACACCGCCACGGCGGTGCTACTTCGGCTCCCTTCTCCGCCACCACCGCCACCGCCACCGCCCTTAACCGACTCCGGGTTGATCCCGCGGGGGAGAGCGGCGAGGCGGAGACGATGGAAGAAGCGGCGGCGGAAAGTAGGGAGGAAGTGGCTTACGATGCAACGAAAGGGAGAGTGGAGAAGGTGAAGGAGACAGTGATTGCAGAGGCAAATGAGAATGTGGTGGATACTACAGAGTACAGAAGCATGGAGGATATGGGCACTATCAAAACATGCTCATTTTGATTTTTTTCTTAAGCTTTTCTTTTTCTTAGTTTTCTTATTATGTATTTGAATGTTTCGGTATTAGTATCAGTATCTGTGTTTAAAGTGTTTTGAATTTATATTATATTCAACGGTATTAGTATTAATCATGTTAGGATGGG

Coding sequence (CDS)

ATGGCTTACTCCAACGGATCCGTTGCTTTGTGCAATATCTCAAAAGCTCTGTTTAAACACCGCCACGGCGGTGCTACTTCGGCTCCCTTCTCCGCCACCACCGCCACCGCCACCGCCCTTAACCGACTCCGGGTTGATCCCGCGGGGGAGAGCGGCGAGGCGGAGACGATGGAAGAAGCGGCGGCGGAAAGTAGGGAGGAAGTGGCTTACGATGCAACGAAAGGGAGAGTGGAGAAGGTGAAGGAGACAGTGATTGCAGAGGCAAATGAGAATGTGGTGGATACTACAGAGTACAGAAGCATGGAGGATATGGGCACTATCAAAACATGCTCATTTTGA

Protein sequence

MAYSNGSVALCNISKALFKHRHGGATSAPFSATTATATALNRLRVDPAGESGEAETMEEAAAESREEVAYDATKGRVEKVKETVIAEANENVVDTTEYRSMEDMGTIKTCSF

Homology

[Close]

BLAST of Lcy12g011560 vs. ExPASy TrEMBL
Match: A0A0A0L055 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631600 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.3e-14
Identity = 60/114 (52.63%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 1   MAYSNGSVALCNISKALFKHRHGGATSA----PFSATTATA------TALNRLRVDPAGE 60
           MAYSN SV     SKALF+  HG A +A    PFS   A +      T+  R       E
Sbjct: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60

Query: 61  SGEAETMEEAAAESREEVAYDATKGRVEKVKETVIAEANENVVDTTEYRSMEDM 105
              AE +++    S  EVAYDATKG  EKVK+TVIAEANENVVDTTEYRSME+M
Sbjct: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENM 114

[Close]

BLAST of Lcy12g011560 vs. ExPASy TrEMBL
Match: A0A5D3DWB9 (Putative chilling-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001770 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-08
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 57  MEEAAAESREEVAYDATKGRVEKVKETVIAEANENVVDTTEYRSMEDMGTI 108
           +E+ A  S  EVAYDATKG  EKVK+TVIAEANENV+DTTEYRSME+M  I
Sbjct: 2   VEDGAVGSTVEVAYDATKGTTEKVKDTVIAEANENVMDTTEYRSMENMDEI 52

[Close]

BLAST of Lcy12g011560 vs. NCBI nr
Match: XP_038899913.1 (uncharacterized protein LOC120087104 [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 6.2e-17
Identity = 70/112 (62.50%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 1   MAYSNGSVALCNISKALFKHRHGGATSAPFSATTATATALNRLR------VDPA-GESGE 60
           MAYSN SVAL   SKALFKHRHG A S P S     ATALNRL       VD A  E   
Sbjct: 1   MAYSNRSVAL-RSSKALFKHRHGAAASPPLSG----ATALNRLHEESDMDVDRAKAEQLR 60

Query: 61  AETMEEAAAESREEVAYDATKGRVEKVKETVIAEANENVVDTTEYRSMEDMG 106
           A    E A  S  EVAYD+TKG  EKVK+T IAEANENVVDT EYRSM DMG
Sbjct: 61  AGMAGEGAMTSIVEVAYDSTKGTAEKVKDTTIAEANENVVDTIEYRSMGDMG 107

[Close]

BLAST of Lcy12g011560 vs. NCBI nr
Match: XP_004146059.1 (uncharacterized protein LOC101215612 [Cucumis sativus] >KGN55118.1 hypothetical protein Csa_012887 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 60/114 (52.63%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 1   MAYSNGSVALCNISKALFKHRHGGATSA----PFSATTATA------TALNRLRVDPAGE 60
           MAYSN SV     SKALF+  HG A +A    PFS   A +      T+  R       E
Sbjct: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60

Query: 61  SGEAETMEEAAAESREEVAYDATKGRVEKVKETVIAEANENVVDTTEYRSMEDM 105
              AE +++    S  EVAYDATKG  EKVK+TVIAEANENVVDTTEYRSME+M
Sbjct: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENM 114

[Close]

BLAST of Lcy12g011560 vs. NCBI nr
Match: KAG6607884.1 (hypothetical protein SDJN03_01226, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-13
Identity = 58/107 (54.21%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 7   SVALCNISKALFKHRHGGATSAPFSATTATATALNRLRVDPAGES-GEAETMEEAAAESR 66
           S+AL +IS  LF+ R       P S+  AT+   +  RV    ES  +A       AESR
Sbjct: 11  SIAL-SISNPLFQRR------LPSSSAAATSYLSHMRRVGSNVESAAKARETTGGGAESR 70

Query: 67  EEVAYDATKGRVEKVKETVIAEANENVVDTTEYRSMEDMGTIKTCSF 113
           EE AYDA  G+ EKVKETVIAEANENV+DT+EYRSME+MG++KTCSF
Sbjct: 71  EERAYDAATGKAEKVKETVIAEANENVMDTSEYRSMEEMGSLKTCSF 110

[Close]

BLAST of Lcy12g011560 vs. NCBI nr
Match: KAA0066826.1 (putative chilling-induced protein [Cucumis melo var. makuwa] >TYK27973.1 putative chilling-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-08
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 57  MEEAAAESREEVAYDATKGRVEKVKETVIAEANENVVDTTEYRSMEDMGTI 108
           +E+ A  S  EVAYDATKG  EKVK+TVIAEANENV+DTTEYRSME+M  I
Sbjct: 2   VEDGAVGSTVEVAYDATKGTTEKVKDTVIAEANENVMDTTEYRSMENMDEI 52

[Close]

BLAST of Lcy12g011560 vs. NCBI nr
Match: XP_020418791.1 (uncharacterized protein LOC109949012 [Prunus persica])

HSP 1 Score: 54.7 bits (130), Expect = 6.0e-04
Identity = 25/42 (59.52%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 62  AESREEVAYDATKGRVEKVKETVIAEANENVVDTTEYRSMED 104
           A+ R + A+D+TK + +KV +T++AEANENV+DTTEYR+MED
Sbjct: 101 AKERTDFAWDSTKNKTQKVGDTLVAEANENVIDTTEYRNMED 142

The following BLAST results are available for this feature:

BLAST of Lcy12g011560 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g011560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L055	5.3e-14	52.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631600 PE=4 SV=1	[more]
A0A5D3DWB9	1.9e-08	72.55	Putative chilling-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lcy12g011560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899913.1	6.2e-17	62.50	uncharacterized protein LOC120087104 [Benincasa hispida]	[more]
XP_004146059.1	1.1e-13	52.63	uncharacterized protein LOC101215612 [Cucumis sativus] >KGN55118.1 hypothetical ...	[more]
KAG6607884.1	1.9e-13	54.21	hypothetical protein SDJN03_01226, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0066826.1	4.0e-08	72.55	putative chilling-induced protein [Cucumis melo var. makuwa] >TYK27973.1 putativ...	[more]
XP_020418791.1	6.0e-04	59.52	uncharacterized protein LOC109949012 [Prunus persica]	[more]

BLAST of Lcy12g011560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g011560.1	Lcy12g011560.1	mRNA