Lcy12g011390 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g011390
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-type domain-containing protein
Location	Chr12: 38867102 .. 38867705 (+)
RNA-Seq Expression	Lcy12g011390
Synteny	Lcy12g011390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCTATAAACAGAAACATCCCAAATCCCAAATCCCAAATCCCTAATTAATTCCTCTGTTCCATCTCCAAGAACACCAAAGCTCAAAAAGCTCTCATTCTTCACAATGGCGGATCCATTGCTGACACTCGTCTTCCCGATGGAAACGATGGTCCCGGAGTCGTCGTCGTCTGCTCCAATCGTCCACTACACCGTAACCCTAGACCTCCGGACGTCCATAATCTTCTCCTTGTCCATAGTCCTCTTCTTCCTCTTCCTGTTCCACATCCTCAGCGTGTTCCTCCAGTGGTTCATGGACGTCCGGCGCGGGGGAGGCGGCGGGGACGTGGAGGCGGCAATGGCGGAGGAGAGGCGGGGGAGGAGGGCGGAGAAGCTGCCGCCGACAGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGATGAGGAATGTGCGATCTGTTTGGAGGAGTTCGTGGCGGGAGAGAACTGCCAGGCGTTGCCGGAATGCAACCATTTTTTTCATTCGGATTGCATTGATGTTTGGTTGAGAAAGAAATTCACTTGCCCTATCTGTCGTAATTGTGTTGCAGCTTAGATCAACTTCTTCTTCTTCTTCTT

mRNA sequence

AAACCCTATAAACAGAAACATCCCAAATCCCAAATCCCAAATCCCTAATTAATTCCTCTGTTCCATCTCCAAGAACACCAAAGCTCAAAAAGCTCTCATTCTTCACAATGGCGGATCCATTGCTGACACTCGTCTTCCCGATGGAAACGATGGTCCCGGAGTCGTCGTCGTCTGCTCCAATCGTCCACTACACCGTAACCCTAGACCTCCGGACGTCCATAATCTTCTCCTTGTCCATAGTCCTCTTCTTCCTCTTCCTGTTCCACATCCTCAGCGTGTTCCTCCAGTGGTTCATGGACGTCCGGCGCGGGGGAGGCGGCGGGGACGTGGAGGCGGCAATGGCGGAGGAGAGGCGGGGGAGGAGGGCGGAGAAGCTGCCGCCGACAGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGATGAGGAATGTGCGATCTGTTTGGAGGAGTTCGTGGCGGGAGAGAACTGCCAGGCGTTGCCGGAATGCAACCATTTTTTTCATTCGGATTGCATTGATGTTTGGTTGAGAAAGAAATTCACTTGCCCTATCTGTCGTAATTGTGTTGCAGCTTAGATCAACTTCTTCTTCTTCTTCTT

Coding sequence (CDS)

ATGGCGGATCCATTGCTGACACTCGTCTTCCCGATGGAAACGATGGTCCCGGAGTCGTCGTCGTCTGCTCCAATCGTCCACTACACCGTAACCCTAGACCTCCGGACGTCCATAATCTTCTCCTTGTCCATAGTCCTCTTCTTCCTCTTCCTGTTCCACATCCTCAGCGTGTTCCTCCAGTGGTTCATGGACGTCCGGCGCGGGGGAGGCGGCGGGGACGTGGAGGCGGCAATGGCGGAGGAGAGGCGGGGGAGGAGGGCGGAGAAGCTGCCGCCGACAGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGATGAGGAATGTGCGATCTGTTTGGAGGAGTTCGTGGCGGGAGAGAACTGCCAGGCGTTGCCGGAATGCAACCATTTTTTTCATTCGGATTGCATTGATGTTTGGTTGAGAAAGAAATTCACTTGCCCTATCTGTCGTAATTGTGTTGCAGCTTAG

Protein sequence

MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQWFMDVRRGGGGGDVEAAMAEERRGRRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA

Homology

[Close]

BLAST of Lcy12g011390 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-14
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 85  RRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECNHFFHSDCIDVWLRK 144
           ++A ++ P V + S +M     DEEC ICL +FV+GE  + LP+CNH FH  CID WL++
Sbjct: 111 KKALRMFPVVSY-SPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 170

Query: 145 KFTCPICRNCV 156
             TCP CRNC+
Sbjct: 171 HLTCPKCRNCL 180

[Close]

BLAST of Lcy12g011390 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.9e-13
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 85  RRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECNHFFHSDCIDVWLRK 144
           ++A K+ P V + S ++      EEC ICL +FVAGE  + LP+CNH FH  CID WL +
Sbjct: 106 KKALKMLPVVNY-SPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQ 165

Query: 145 KFTCPICRNCV 156
             TCP CR+C+
Sbjct: 166 HMTCPKCRHCL 175

[Close]

BLAST of Lcy12g011390 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 73  DVEAAMAEERRG--RRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECN 132
           D+ +  AE + G  R   +  P +  G  + + R ++  C+ICL ++ A E  + +PECN
Sbjct: 55  DLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECN 114

Query: 133 HFFHSDCIDVWLRKKFTCPICRNCVA 157
           H FH+DC+D WLR   TCP+CRN  A
Sbjct: 115 HCFHTDCVDEWLRTSATCPLCRNSPA 140

[Close]

BLAST of Lcy12g011390 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 85  RRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECNHFFHSDCIDVWLRK 144
           ++A ++ P V + S +M      EEC ICL +FV+GE  + LP+CNH FH  CID WL+ 
Sbjct: 111 KKALRMFPVVSY-SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQH 170

Query: 145 KFTCPICRNCV 156
             TCP CR+C+
Sbjct: 171 HLTCPKCRHCL 180

[Close]

BLAST of Lcy12g011390 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 109 ECAICLEEFVAGENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCV 156
           EC+ICL E V G+  + LP+CNH FH +CID+W +   TCPICRN V
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of Lcy12g011390 vs. ExPASy TrEMBL
Match: A0A0A0L062 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.8e-68
Identity = 135/160 (84.38%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           M DPLLTL+FPMETMVPE S S P++HYTVTLD+RTSIIFS SI+LFFLFLFH+LS FLQ
Sbjct: 1   MGDPLLTLLFPMETMVPE-SPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQ 60

Query: 61  WFMDVRRGGGGG-DVEAAMAEERRGRRAEK--LPPTVRFGSEKMVRRRSDEECAICLEEF 120
           WF+DVRR GGGG DVEAAMAEERR +RAEK  LPPTVRFGSEKMVRRRS+EECAICLEEF
Sbjct: 61  WFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEF 120

Query: 121 VAGENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           + GENCQALPECNHFFHS+CIDVW  KKFTCPICRNCVAA
Sbjct: 121 LIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Lcy12g011390 vs. ExPASy TrEMBL
Match: A0A5A7VAT0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00330 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.4e-67
Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           M DPLLTL+FPMETMVPE SSS P++HYTVTLDLRTSIIFS SI+LFFLFLFH+LS FLQ
Sbjct: 40  MGDPLLTLLFPMETMVPE-SSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 99

Query: 61  WFMDVRRGGGGG-DVEAAMAEERRGRRAEK--LPPTVRFGSEKMVRRRSDEECAICLEEF 120
           WF+DVRR GGG  DVEAAMAEERR +RAEK  LPPTV+FGSEKMVRRRS+EECAICLEEF
Sbjct: 100 WFLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEF 159

Query: 121 VAGENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           +AGENCQALPEC+HFFHS+CI+VW  KKFTCPICRNCVAA
Sbjct: 160 LAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 198

[Close]

BLAST of Lcy12g011390 vs. ExPASy TrEMBL
Match: A0A5D3D9M0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003920 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.4e-67
Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           M DPLLTL+FPMETMVPE SSS P++HYTVTLDLRTSIIFS SI+LFFLFLFH+LS FLQ
Sbjct: 1   MGDPLLTLLFPMETMVPE-SSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60

Query: 61  WFMDVRRGGGGG-DVEAAMAEERRGRRAEK--LPPTVRFGSEKMVRRRSDEECAICLEEF 120
           WF+DVRR GGG  DVEAAMAEERR +RAEK  LPPTV+FGSEKMVRRRS+EECAICLEEF
Sbjct: 61  WFLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEF 120

Query: 121 VAGENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           +AGENCQALPEC+HFFHS+CI+VW  KKFTCPICRNCVAA
Sbjct: 121 LAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Lcy12g011390 vs. ExPASy TrEMBL
Match: A0A1S3BVC7 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.4e-67
Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           M DPLLTL+FPMETMVPE SSS P++HYTVTLDLRTSIIFS SI+LFFLFLFH+LS FLQ
Sbjct: 1   MGDPLLTLLFPMETMVPE-SSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60

Query: 61  WFMDVRRGGGGG-DVEAAMAEERRGRRAEK--LPPTVRFGSEKMVRRRSDEECAICLEEF 120
           WF+DVRR GGG  DVEAAMAEERR +RAEK  LPPTV+FGSEKMVRRRS+EECAICLEEF
Sbjct: 61  WFLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEF 120

Query: 121 VAGENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           +AGENCQALPEC+HFFHS+CI+VW  KKFTCPICRNCVAA
Sbjct: 121 LAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Lcy12g011390 vs. ExPASy TrEMBL
Match: A0A6J1IG67 (RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.7e-64
Identity = 126/157 (80.25%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           MADPLLTL+FPMETMV ES+S   IVHYTVTLDLRTSIIFS++I+LFFLFL+H+LS FLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFMDVRRGGGGGDVEAAMAEERRGRRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAG 120
           WF+  RR   GGDVEA M EERR RRAEK+P  VRFGSE+MVRRRS+EECAICLEEF+AG
Sbjct: 61  WFLSGRR---GGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAG 120

Query: 121 ENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           ENCQALPECNHFFHSDCIDVW  KKFTCPICR+C+AA
Sbjct: 121 ENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of Lcy12g011390 vs. NCBI nr
Match: XP_031740449.1 (RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 135/160 (84.38%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           M DPLLTL+FPMETMVPE S S P++HYTVTLD+RTSIIFS SI+LFFLFLFH+LS FLQ
Sbjct: 1   MGDPLLTLLFPMETMVPE-SPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQ 60

Query: 61  WFMDVRRGGGGG-DVEAAMAEERRGRRAEK--LPPTVRFGSEKMVRRRSDEECAICLEEF 120
           WF+DVRR GGGG DVEAAMAEERR +RAEK  LPPTVRFGSEKMVRRRS+EECAICLEEF
Sbjct: 61  WFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEF 120

Query: 121 VAGENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           + GENCQALPECNHFFHS+CIDVW  KKFTCPICRNCVAA
Sbjct: 121 LIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Lcy12g011390 vs. NCBI nr
Match: KAA0064334.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 7.0e-67
Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           M DPLLTL+FPMETMVPE SSS P++HYTVTLDLRTSIIFS SI+LFFLFLFH+LS FLQ
Sbjct: 40  MGDPLLTLLFPMETMVPE-SSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 99

Query: 61  WFMDVRRGGGGG-DVEAAMAEERRGRRAEK--LPPTVRFGSEKMVRRRSDEECAICLEEF 120
           WF+DVRR GGG  DVEAAMAEERR +RAEK  LPPTV+FGSEKMVRRRS+EECAICLEEF
Sbjct: 100 WFLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEF 159

Query: 121 VAGENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           +AGENCQALPEC+HFFHS+CI+VW  KKFTCPICRNCVAA
Sbjct: 160 LAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 198

[Close]

BLAST of Lcy12g011390 vs. NCBI nr
Match: XP_008453063.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 7.0e-67
Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           M DPLLTL+FPMETMVPE SSS P++HYTVTLDLRTSIIFS SI+LFFLFLFH+LS FLQ
Sbjct: 1   MGDPLLTLLFPMETMVPE-SSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60

Query: 61  WFMDVRRGGGGG-DVEAAMAEERRGRRAEK--LPPTVRFGSEKMVRRRSDEECAICLEEF 120
           WF+DVRR GGG  DVEAAMAEERR +RAEK  LPPTV+FGSEKMVRRRS+EECAICLEEF
Sbjct: 61  WFLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEF 120

Query: 121 VAGENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           +AGENCQALPEC+HFFHS+CI+VW  KKFTCPICRNCVAA
Sbjct: 121 LAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Lcy12g011390 vs. NCBI nr
Match: XP_022976597.1 (RING-H2 finger protein ATL39-like [Cucurbita maxima])

HSP 1 Score: 254.6 bits (649), Expect = 5.6e-64
Identity = 126/157 (80.25%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           MADPLLTL+FPMETMV ES+S   IVHYTVTLDLRTSIIFS++I+LFFLFL+H+LS FLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFMDVRRGGGGGDVEAAMAEERRGRRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAG 120
           WF+  RR   GGDVEA M EERR RRAEK+P  VRFGSE+MVRRRS+EECAICLEEF+AG
Sbjct: 61  WFLSGRR---GGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAG 120

Query: 121 ENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           ENCQALPECNHFFHSDCIDVW  KKFTCPICR+C+AA
Sbjct: 121 ENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of Lcy12g011390 vs. NCBI nr
Match: XP_022936829.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata])

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 124/157 (78.98%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MADPLLTLVFPMETMVPESSSSAPIVHYTVTLDLRTSIIFSLSIVLFFLFLFHILSVFLQ 60
           MADPLLTL+FPMETMV ES+S   +VHYTVTLDLRTS+IFS++I+LFFLFL+H+LS FLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFMDVRRGGGGGDVEAAMAEERRGRRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAG 120
           WF+  RR   GGDVEA M EERR RRAEK+P  VRFGSE+MVRRRS+EECAICLEEF+AG
Sbjct: 61  WFLSGRR---GGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAG 120

Query: 121 ENCQALPECNHFFHSDCIDVWLRKKFTCPICRNCVAA 158
           ENCQALPECNHFFHSDCIDVW  KKFTCPICR+C+AA
Sbjct: 121 ENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of Lcy12g011390 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-15
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 85  RRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECNHFFHSDCIDVWLRK 144
           ++A ++ P V + S +M     DEEC ICL +FV+GE  + LP+CNH FH  CID WL++
Sbjct: 111 KKALRMFPVVSY-SPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 170

Query: 145 KFTCPICRNCV 156
             TCP CRNC+
Sbjct: 171 HLTCPKCRNCL 180

[Close]

BLAST of Lcy12g011390 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 5.6e-14
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 85  RRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECNHFFHSDCIDVWLRK 144
           ++A K+ P V + S ++      EEC ICL +FVAGE  + LP+CNH FH  CID WL +
Sbjct: 106 KKALKMLPVVNY-SPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQ 165

Query: 145 KFTCPICRNCV 156
             TCP CR+C+
Sbjct: 166 HMTCPKCRHCL 175

[Close]

BLAST of Lcy12g011390 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 92  PTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECNHFFHSDCIDVWLRKKFTCPIC 151
           P +  G  K + +  D  CAICL E+   E  + +P+C H FH+DCID WL+   TCP+C
Sbjct: 312 PKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHADCIDEWLKLNGTCPVC 371

Query: 152 RN 154
           RN
Sbjct: 372 RN 373

[Close]

BLAST of Lcy12g011390 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 85  RRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECNHFFHSDCIDVWLRK 144
           ++A ++ P V + S +M      EEC ICL +FV+GE  + LP+CNH FH  CID WL+ 
Sbjct: 111 KKALRMFPVVSY-SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQH 170

Query: 145 KFTCPICRNCV 156
             TCP CR+C+
Sbjct: 171 HLTCPKCRHCL 180

[Close]

BLAST of Lcy12g011390 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 73  DVEAAMAEERRG--RRAEKLPPTVRFGSEKMVRRRSDEECAICLEEFVAGENCQALPECN 132
           D+ +  AE + G  R   +  P +  G  + + R ++  C+ICL ++ A E  + +PECN
Sbjct: 55  DLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECN 114

Query: 133 HFFHSDCIDVWLRKKFTCPICRNCVA 157
           H FH+DC+D WLR   TCP+CRN  A
Sbjct: 115 HCFHTDCVDEWLRTSATCPLCRNSPA 140

The following BLAST results are available for this feature:

BLAST of Lcy12g011390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C034	7.2e-14	49.30	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q9LS99	7.9e-13	47.89	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
Q9FL42	2.3e-12	39.53	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q6NML0	2.3e-12	46.48	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
Q9XF63	6.7e-12	57.45	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]

BLAST of Lcy12g011390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L062	6.8e-68	84.38	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 P...	[more]
A0A5A7VAT0	3.4e-67	83.75	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D9M0	3.4e-67	83.75	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BVC7	3.4e-67	83.75	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 S...	[more]
A0A6J1IG67	2.7e-64	80.25	RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE...	[more]

BLAST of Lcy12g011390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740449.1	1.4e-67	84.38	RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]
KAA0064334.1	7.0e-67	83.75	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
XP_008453063.1	7.0e-67	83.75	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 ...	[more]
XP_022976597.1	5.6e-64	80.25	RING-H2 finger protein ATL39-like [Cucurbita maxima]	[more]
XP_022936829.1	1.6e-63	78.98	RING-H2 finger protein ATL39-like [Cucurbita moschata]	[more]

BLAST of Lcy12g011390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49220.1	5.1e-15	49.30	RING/U-box superfamily protein	[more]
AT3G18773.1	5.6e-14	47.89	RING/U-box superfamily protein	[more]
AT5G53110.1	1.3e-13	45.16	RING/U-box superfamily protein	[more]
AT1G49210.1	1.6e-13	46.48	RING/U-box superfamily protein	[more]
AT5G07040.1	1.6e-13	39.53	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 110..151 e-value: 4.0E-7 score: 39.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 109..152 e-value: 3.4E-14 score: 52.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 110..152 score: 12.54829
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 74..156 e-value: 4.1E-20 score: 73.2
None	No IPR available	PANTHER	PTHR14155:SF493	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 80..155
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 80..155
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 109..152 e-value: 1.97423E-16 score: 66.9417
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 105..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g011390.1	Lcy12g011390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane